RNA–Protein interactions for RNA: ENST00000596163.5

SHKBP1-212, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 785 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-212ENST00000596163 FOXD1Q16676 465 aa25.52■■□□□ 1.68
SHKBP1-212ENST00000596163 ZNF326Q5BKZ1 582 aaKnown RBP25.52■■□□□ 1.68
SHKBP1-212ENST00000596163 IQGAP1P46940 1657 aa25.5■■□□□ 1.67
SHKBP1-212ENST00000596163 ZFYVE9O95405 1425 aa25.49■■□□□ 1.67
SHKBP1-212ENST00000596163 PLEKHG1Q9ULL1 1385 aa25.46■■□□□ 1.67
SHKBP1-212ENST00000596163 LTBP4Q8N2S1 1624 aa25.46■■□□□ 1.67
SHKBP1-212ENST00000596163 CCDC144AA2RUR9 1427 aa25.46■■□□□ 1.67
SHKBP1-212ENST00000596163 TRIM26Q12899 539 aaPredicted RBP25.45■■□□□ 1.66
SHKBP1-212ENST00000596163 FBXO41Q8TF61 875 aa25.45■■□□□ 1.66
SHKBP1-212ENST00000596163 CLTCL1P53675 1640 aa25.44■■□□□ 1.66
SHKBP1-212ENST00000596163 NUTM2DQ5VT03 806 aaPredicted RBP25.43■■□□□ 1.66
SHKBP1-212ENST00000596163 RPGRIP1LQ68CZ1 1315 aa25.42■■□□□ 1.66
SHKBP1-212ENST00000596163 SLC26A8Q96RN1 970 aa25.42■■□□□ 1.66
SHKBP1-212ENST00000596163 CPS1P31327 1500 aa25.41■■□□□ 1.66
SHKBP1-212ENST00000596163 IQSEC2Q5JU85 1478 aa25.4■■□□□ 1.66
SHKBP1-212ENST00000596163 TBX22Q9Y458 520 aa25.39■■□□□ 1.66
SHKBP1-212ENST00000596163 MYO5BQ9ULV0 1848 aa25.39■■□□□ 1.65
SHKBP1-212ENST00000596163 VGFO15240 615 aaPredicted RBP25.38■■□□□ 1.65
SHKBP1-212ENST00000596163 KIF1BO60333 1816 aa25.36■■□□□ 1.65
SHKBP1-212ENST00000596163 KCNA6P17658 529 aa25.36■■□□□ 1.65
SHKBP1-212ENST00000596163 SENP3Q9H4L4 574 aaPredicted RBP25.36■■□□□ 1.65
SHKBP1-212ENST00000596163 RGL3Q3MIN7 710 aa25.32■■□□□ 1.64
SHKBP1-212ENST00000596163 ANKRD30BQ9BXX2 1392 aa25.31■■□□□ 1.64
SHKBP1-212ENST00000596163 NEXMIFQ5QGS0 1516 aa25.29■■□□□ 1.64
SHKBP1-212ENST00000596163 PIK3R4Q99570 1358 aa25.29■■□□□ 1.64
SHKBP1-212ENST00000596163 SPATA31E1Q6ZUB1 1445 aa25.28■■□□□ 1.64
SHKBP1-212ENST00000596163 ADAMTS13Q76LX8 1427 aa25.28■■□□□ 1.64
SHKBP1-212ENST00000596163 DIP2AQ14689 1571 aa25.27■■□□□ 1.64
SHKBP1-212ENST00000596163 PROSER2Q86WR7 435 aaPredicted RBP25.26■■□□□ 1.63
SHKBP1-212ENST00000596163 UBAP1LF5GYI3 381 aa25.25■■□□□ 1.63
SHKBP1-212ENST00000596163 LRRC7Q96NW7 1537 aa25.24■■□□□ 1.63
SHKBP1-212ENST00000596163 TOM1O60784 492 aa25.24■■□□□ 1.63
SHKBP1-212ENST00000596163 SETBP1Q9Y6X0 1596 aa25.22■■□□□ 1.63
SHKBP1-212ENST00000596163 AMOTL2Q9Y2J4 779 aa25.2■■□□□ 1.62
SHKBP1-212ENST00000596163 NKTRP30414 1462 aaKnown RBP25.2■■□□□ 1.62
SHKBP1-212ENST00000596163 STRCP1A6NGW2 1772 aa25.18■■□□□ 1.62
SHKBP1-212ENST00000596163 NWD1Q149M9 1564 aa25.18■■□□□ 1.62
SHKBP1-212ENST00000596163 TMEM94Q12767 1356 aa25.18■■□□□ 1.62
SHKBP1-212ENST00000596163 ADGRF5Q8IZF2 1346 aa25.16■■□□□ 1.62
SHKBP1-212ENST00000596163 STAC3Q96MF2 364 aa25.16■■□□□ 1.62
SHKBP1-212ENST00000596163 PPLO60437 1756 aa25.14■■□□□ 1.62
SHKBP1-212ENST00000596163 NRXN3Q9Y4C0 1643 aa25.14■■□□□ 1.61
SHKBP1-212ENST00000596163 METP08581 1390 aa25.14■■□□□ 1.61
SHKBP1-212ENST00000596163 CHD2O14647 1828 aaKnown RBP25.13■■□□□ 1.61
SHKBP1-212ENST00000596163 NCOA3Q9Y6Q9 1424 aa25.12■■□□□ 1.61
SHKBP1-212ENST00000596163 PTPRUQ92729 1446 aa25.11■■□□□ 1.61
SHKBP1-212ENST00000596163 C14orf37Q86TY3 774 aa25.1■■□□□ 1.61
SHKBP1-212ENST00000596163 DCAF11Q8TEB1 546 aa25.09■■□□□ 1.61
SHKBP1-212ENST00000596163 RBM33Q96EV2 1170 aaKnown RBP25.09■■□□□ 1.61
SHKBP1-212ENST00000596163 SCAF1Q9H7N4 1312 aaKnown RBP25.09■■□□□ 1.61
SHKBP1-212ENST00000596163 ALKQ9UM73 1620 aa25.08■■□□□ 1.61
SHKBP1-212ENST00000596163 MSH6P52701 1360 aa25.08■■□□□ 1.61
SHKBP1-212ENST00000596163 PIP4K2BP78356 416 aa25.08■■□□□ 1.61
SHKBP1-212ENST00000596163 KDM2AQ9Y2K7 1162 aa25.07■■□□□ 1.6
SHKBP1-212ENST00000596163 MYOM2P54296 1465 aa25.07■■□□□ 1.6
SHKBP1-212ENST00000596163 PIK3C2GO75747 1445 aa25.06■■□□□ 1.6
SHKBP1-212ENST00000596163 C14orf93Q9H972 538 aaKnown RBP25.06■■□□□ 1.6
SHKBP1-212ENST00000596163 DHX57Q6P158 1386 aaKnown RBP25.05■■□□□ 1.6
SHKBP1-212ENST00000596163 IFT172Q9UG01 1749 aa25.04■■□□□ 1.6
SHKBP1-212ENST00000596163 C19orf44Q9H6X5 657 aa25.04■■□□□ 1.6
SHKBP1-212ENST00000596163 NRXN1Q9ULB1 1477 aa25.02■■□□□ 1.6
SHKBP1-212ENST00000596163 ATF3P18847 181 aa25■■□□□ 1.59
SHKBP1-212ENST00000596163 CFAP70Q5T0N1 1121 aa25■■□□□ 1.59
SHKBP1-212ENST00000596163 CADPS2Q86UW7 1296 aa25■■□□□ 1.59
SHKBP1-212ENST00000596163 PCGF6Q9BYE7 350 aa25■■□□□ 1.59
SHKBP1-212ENST00000596163 XRN1Q8IZH2 1706 aaKnown RBP25■■□□□ 1.59
SHKBP1-212ENST00000596163 PTCH1Q13635 1447 aa24.98■■□□□ 1.59
SHKBP1-212ENST00000596163 TMEM132EQ6IEE7 984 aa24.98■■□□□ 1.59
SHKBP1-212ENST00000596163 STK26Q9P289 416 aa24.98■■□□□ 1.59
SHKBP1-212ENST00000596163 XIRP1Q702N8 1843 aaKnown RBP24.98■■□□□ 1.59
SHKBP1-212ENST00000596163 LRPPRCP42704 1394 aaKnown RBP24.97■■□□□ 1.59
SHKBP1-212ENST00000596163 NEUROD1Q13562 356 aa24.97■■□□□ 1.59
SHKBP1-212ENST00000596163 SIN3AQ96ST3 1273 aa24.97■■□□□ 1.59
SHKBP1-212ENST00000596163 PRAG1Q86YV5 1406 aa24.96■■□□□ 1.59
SHKBP1-212ENST00000596163 SLAIN2Q9P270 581 aa24.96■■□□□ 1.59
SHKBP1-212ENST00000596163 SETD1AO15047 1707 aaKnown RBP24.95■■□□□ 1.59
SHKBP1-212ENST00000596163 ABCC11Q96J66 1382 aa24.95■■□□□ 1.59
SHKBP1-212ENST00000596163 ROBO2Q9HCK4 1378 aa24.94■■□□□ 1.58
SHKBP1-212ENST00000596163 SIRT1Q96EB6 747 aa24.93■■□□□ 1.58
SHKBP1-212ENST00000596163 FAM135BQ49AJ0 1406 aa24.93■■□□□ 1.58
SHKBP1-212ENST00000596163 YTHDC2Q9H6S0 1430 aaKnown RBP24.92■■□□□ 1.58
SHKBP1-212ENST00000596163 LAMC1P11047 1609 aa24.91■■□□□ 1.58
SHKBP1-212ENST00000596163 DCCP43146 1447 aa24.91■■□□□ 1.58
SHKBP1-212ENST00000596163 TECPR2O15040 1411 aa24.9■■□□□ 1.58
SHKBP1-212ENST00000596163 ADGRL3Q9HAR2 1447 aa24.9■■□□□ 1.58
SHKBP1-212ENST00000596163 L3MBTL2Q969R5 705 aa24.9■■□□□ 1.58
SHKBP1-212ENST00000596163 HSPA1LP34931 641 aa24.89■■□□□ 1.58
SHKBP1-212ENST00000596163 WAPLQ7Z5K2 1190 aa24.86■■□□□ 1.57
SHKBP1-212ENST00000596163 ASXL1Q8IXJ9 1541 aa24.86■■□□□ 1.57
SHKBP1-212ENST00000596163 SIPA1L2Q9P2F8 1722 aaPredicted RBP24.85■■□□□ 1.57
SHKBP1-212ENST00000596163 POGKQ9P215 609 aa24.83■■□□□ 1.57
SHKBP1-212ENST00000596163 TRAK1Q9UPV9 953 aa24.81■■□□□ 1.56
SHKBP1-212ENST00000596163 TONSLQ96HA7 1378 aa24.8■■□□□ 1.56
SHKBP1-212ENST00000596163 PRAM1Q96QH2 718 aa24.8■■□□□ 1.56
SHKBP1-212ENST00000596163 ADGRB1O14514 1584 aa24.8■■□□□ 1.56
SHKBP1-212ENST00000596163 KNDC1Q76NI1 1749 aa24.79■■□□□ 1.56
SHKBP1-212ENST00000596163 MST1RQ04912 1400 aa24.78■■□□□ 1.56
SHKBP1-212ENST00000596163 DLC1Q96QB1 1528 aa24.77■■□□□ 1.56
SHKBP1-212ENST00000596163 PLEKHH1Q9ULM0 1364 aa24.77■■□□□ 1.56
SHKBP1-212ENST00000596163 BRINP3Q76B58 766 aa24.76■■□□□ 1.55
Retrieved 100 of 20,778 RNA–protein pairs in 52.8 ms