RNA–Protein interactions for RNA: ENST00000590574.5

SMARCA4-215, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SMARCA4, Length 5,282 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA4-215ENST00000590574 PTMAP06454 111 aaKnown RBP21.55■■□□□ 1.04
SMARCA4-215ENST00000590574 NFKBIBQ15653 356 aa21.54■■□□□ 1.04
SMARCA4-215ENST00000590574 HAP1P54257 671 aaPredicted RBP21.52■■□□□ 1.04
SMARCA4-215ENST00000590574 CCDC141Q6ZP82 1450 aa21.52■■□□□ 1.04
SMARCA4-215ENST00000590574 CFAP44Q96MT7 982 aa21.52■■□□□ 1.04
SMARCA4-215ENST00000590574 BCAR3O75815 825 aa21.51■■□□□ 1.03
SMARCA4-215ENST00000590574 ZNF608Q9ULD9 1512 aaPredicted RBP21.51■■□□□ 1.03
SMARCA4-215ENST00000590574 KIF14Q15058 1648 aa21.51■■□□□ 1.03
SMARCA4-215ENST00000590574 HDGFP51858 240 aaKnown RBP21.5■■□□□ 1.03
SMARCA4-215ENST00000590574 DZIP1LQ8IYY4 767 aaKnown RBP21.5■■□□□ 1.03
SMARCA4-215ENST00000590574 FOXD4L1Q9NU39 408 aa21.5■■□□□ 1.03
SMARCA4-215ENST00000590574 PLEKHH2Q8IVE3 1493 aa21.5■■□□□ 1.03
SMARCA4-215ENST00000590574 MINK1Q8N4C8 1332 aaPredicted RBP21.5■■□□□ 1.03
SMARCA4-215ENST00000590574 RTF1Q92541 710 aaKnown RBP21.49■■□□□ 1.03
SMARCA4-215ENST00000590574 TMEM132EQ6IEE7 984 aa21.49■■□□□ 1.03
SMARCA4-215ENST00000590574 GPATCH8Q9UKJ3 1502 aaKnown RBP21.48■■□□□ 1.03
SMARCA4-215ENST00000590574 ELL2O00472 640 aaPredicted RBP21.47■■□□□ 1.03
SMARCA4-215ENST00000590574 TCP11L2Q8N4U5 519 aa21.47■■□□□ 1.03
SMARCA4-215ENST00000590574 DDX19BQ9UMR2 479 aa21.46■■□□□ 1.03
SMARCA4-215ENST00000590574 MTHFSP49914 203 aa21.46■■□□□ 1.03
SMARCA4-215ENST00000590574 RIPK4P57078 832 aa21.45■■□□□ 1.02
SMARCA4-215ENST00000590574 OS9Q13438 667 aaPredicted RBP21.45■■□□□ 1.02
SMARCA4-215ENST00000590574 ANKRD45Q5TZF3 282 aa21.45■■□□□ 1.02
SMARCA4-215ENST00000590574 PTMSP20962 102 aa21.45■■□□□ 1.02
SMARCA4-215ENST00000590574 SKAP1Q86WV1 359 aa21.44■■□□□ 1.02
SMARCA4-215ENST00000590574 RAPGEF6Q8TEU7 1601 aa21.44■■□□□ 1.02
SMARCA4-215ENST00000590574 MCCP23508 829 aa21.44■■□□□ 1.02
SMARCA4-215ENST00000590574 NUP153P49790 1475 aaKnown RBP21.44■■□□□ 1.02
SMARCA4-215ENST00000590574 DIAPH1O60610 1272 aaKnown RBP21.43■■□□□ 1.02
SMARCA4-215ENST00000590574 CABP2Q9NPB3 220 aa21.43■■□□□ 1.02
SMARCA4-215ENST00000590574 C20orf194Q5TEA3 1177 aa21.43■■□□□ 1.02
SMARCA4-215ENST00000590574 LMOD3Q0VAK6 560 aa21.42■■□□□ 1.02
SMARCA4-215ENST00000590574 DNTTIP2Q5QJE6 756 aaKnown RBP21.42■■□□□ 1.02
SMARCA4-215ENST00000590574 GGNBP2Q9H3C7 697 aa21.41■■□□□ 1.02
SMARCA4-215ENST00000590574 PDE3AQ14432 1141 aa21.4■■□□□ 1.02
SMARCA4-215ENST00000590574 WDR62O43379 1518 aa21.4■■□□□ 1.02
SMARCA4-215ENST00000590574 RALGAPBQ86X10 1494 aa21.4■■□□□ 1.02
SMARCA4-215ENST00000590574 MSNP26038 577 aaKnown RBP21.4■■□□□ 1.02
SMARCA4-215ENST00000590574 SLFN5Q08AF3 891 aa21.39■■□□□ 1.02
SMARCA4-215ENST00000590574 AAMPQ13685 434 aa21.39■■□□□ 1.02
SMARCA4-215ENST00000590574 SCAPERQ9BY12 1400 aa21.39■■□□□ 1.02
SMARCA4-215ENST00000590574 SLC12A5Q9H2X9 1139 aa21.39■■□□□ 1.01
SMARCA4-215ENST00000590574 DDX11L8A8MPP1 907 aa21.39■■□□□ 1.01
SMARCA4-215ENST00000590574 DISP3Q9P2K9 1392 aa21.38■■□□□ 1.01
SMARCA4-215ENST00000590574 PLCB2Q00722 1185 aa21.38■■□□□ 1.01
SMARCA4-215ENST00000590574 SLC4A10Q6U841 1118 aa21.36■■□□□ 1.01
SMARCA4-215ENST00000590574 FRAT2O75474 233 aaPredicted RBP21.35■■□□□ 1.01
SMARCA4-215ENST00000590574 LMOD2Q6P5Q4 547 aa21.35■■□□□ 1.01
SMARCA4-215ENST00000590574 PDZRN3Q9UPQ7 1066 aa21.35■■□□□ 1.01
SMARCA4-215ENST00000590574 C22orf23Q9BZE7 217 aa21.35■■□□□ 1.01
SMARCA4-215ENST00000590574 KCNJ4P48050 445 aa21.34■■□□□ 1.01
SMARCA4-215ENST00000590574 ITSN2Q9NZM3 1697 aa21.33■■□□□ 1.01
SMARCA4-215ENST00000590574 HMMRO75330 724 aa21.33■■□□□ 1.01
SMARCA4-215ENST00000590574 STK31Q9BXU1 1019 aa21.33■■□□□ 1
SMARCA4-215ENST00000590574 DHX29Q7Z478 1369 aaKnown RBP21.32■■□□□ 1
SMARCA4-215ENST00000590574 KIF16BQ96L93 1317 aa21.32■■□□□ 1
SMARCA4-215ENST00000590574 NUTM2FA1L443 756 aa21.32■■□□□ 1
SMARCA4-215ENST00000590574 COG3Q96JB2 828 aa21.32■■□□□ 1
SMARCA4-215ENST00000590574 LNPKQ9C0E8 428 aa21.32■■□□□ 1
SMARCA4-215ENST00000590574 ADAMTS12P58397 1594 aa21.32■■□□□ 1
SMARCA4-215ENST00000590574 CHMP5Q9NZZ3 219 aa21.32■■□□□ 1
SMARCA4-215ENST00000590574 SAMD9Q5K651 1589 aa21.32■■□□□ 1
SMARCA4-215ENST00000590574 KIAA0556O60303 1618 aa21.31■■□□□ 1
SMARCA4-215ENST00000590574 EXOSC9Q06265 439 aaKnown RBP21.3■■□□□ 1
SMARCA4-215ENST00000590574 IL27Q8NEV9 243 aa21.3■■□□□ 1
SMARCA4-215ENST00000590574 TSR2Q969E8 191 aaKnown RBP21.3■■□□□ 1
SMARCA4-215ENST00000590574 HMOX1P09601 288 aa21.29■■□□□ 1
SMARCA4-215ENST00000590574 WWC1Q8IX03 1113 aa21.29■■□□□ 1
SMARCA4-215ENST00000590574 PZPP20742 1482 aa21.29■■□□□ 1
SMARCA4-215ENST00000590574 TRIM6-TRIM34B2RNG4 842 aa21.29■■□□□ 1
SMARCA4-215ENST00000590574 DNMT1P26358 1616 aaKnown RBP21.29■■□□□ 1
SMARCA4-215ENST00000590574 NINLQ9Y2I6 1382 aa21.29■■□□□ 1
SMARCA4-215ENST00000590574 BRPF3Q9ULD4 1205 aa21.29■■□□□ 1
SMARCA4-215ENST00000590574 DUSP27Q5VZP5 1158 aa21.28■■□□□ 1
SMARCA4-215ENST00000590574 TEX14Q8IWB6 1497 aa21.28■■□□□ 1
SMARCA4-215ENST00000590574 MAGI3Q5TCQ9 1506 aa21.28■■□□□ 1
SMARCA4-215ENST00000590574 WDR63Q8IWG1 891 aa21.27■■□□□ 1
SMARCA4-215ENST00000590574 ST18O60284 1047 aa21.27■□□□□ 0.99
SMARCA4-215ENST00000590574 NOL8Q76FK4 1167 aaKnown RBP21.26■□□□□ 0.99
SMARCA4-215ENST00000590574 KIF21AQ7Z4S6 1674 aa21.25■□□□□ 0.99
SMARCA4-215ENST00000590574 ATP10BO94823 1461 aa21.25■□□□□ 0.99
SMARCA4-215ENST00000590574 KIAA1211Q6ZU35 1233 aa21.25■□□□□ 0.99
SMARCA4-215ENST00000590574 PARD3Q8TEW0 1356 aa21.25■□□□□ 0.99
SMARCA4-215ENST00000590574 NSD3Q9BZ95 1437 aa21.25■□□□□ 0.99
SMARCA4-215ENST00000590574 ABCA5Q8WWZ7 1642 aa21.24■□□□□ 0.99
SMARCA4-215ENST00000590574 PRAG1Q86YV5 1406 aa21.24■□□□□ 0.99
SMARCA4-215ENST00000590574 NKTRP30414 1462 aaKnown RBP21.23■□□□□ 0.99
SMARCA4-215ENST00000590574 API5Q9BZZ5 524 aaKnown RBP21.23■□□□□ 0.99
SMARCA4-215ENST00000590574 FOXD4L5Q5VV16 416 aaPredicted RBP21.23■□□□□ 0.99
SMARCA4-215ENST00000590574 FOXD4L4Q8WXT5 416 aaPredicted RBP21.23■□□□□ 0.99
SMARCA4-215ENST00000590574 NOB1Q9ULX3 412 aaKnown RBP21.23■□□□□ 0.99
SMARCA4-215ENST00000590574 GCC2Q8IWJ2 1684 aa21.22■□□□□ 0.99
SMARCA4-215ENST00000590574 DDX49Q9Y6V7 483 aaKnown RBP21.22■□□□□ 0.99
SMARCA4-215ENST00000590574 GNAI1P63096 354 aa21.22■□□□□ 0.99
SMARCA4-215ENST00000590574 SKOR2Q2VWA4 1001 aaPredicted RBP21.22■□□□□ 0.99
SMARCA4-215ENST00000590574 AMPHP49418 695 aa21.22■□□□□ 0.99
SMARCA4-215ENST00000590574 RSPH6AQ9H0K4 717 aa21.22■□□□□ 0.99
SMARCA4-215ENST00000590574 FGD1P98174 961 aa21.21■□□□□ 0.99
SMARCA4-215ENST00000590574 MVPQ14764 893 aaKnown RBP21.21■□□□□ 0.99
SMARCA4-215ENST00000590574 NGDNQ8NEJ9 315 aaKnown RBP21.21■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms