RNA–Protein interactions for RNA: ENST00000588713.1

LIG3-211, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 467 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-211ENST00000588713 SHPRHQ149N8 1683 aa6.76□□□□□ -1.33
LIG3-211ENST00000588713 ZC3H13Q5T200 1668 aaKnown RBP6.76□□□□□ -1.33
LIG3-211ENST00000588713 BLMP54132 1417 aaPredicted RBP6.76□□□□□ -1.33
LIG3-211ENST00000588713 BCL9LQ86UU0 1499 aa6.75□□□□□ -1.33
LIG3-211ENST00000588713 SUPT5HO00267 1087 aaKnown RBP6.75□□□□□ -1.33
LIG3-211ENST00000588713 FARP1Q9Y4F1 1045 aaPredicted RBP6.75□□□□□ -1.33
LIG3-211ENST00000588713 NLRP1Q9C000 1473 aa6.74□□□□□ -1.33
LIG3-211ENST00000588713 ADAMTS2O95450 1211 aa6.74□□□□□ -1.33
LIG3-211ENST00000588713 CD44P16070 742 aaKnown RBP6.74□□□□□ -1.33
LIG3-211ENST00000588713 R3HDM1Q15032 1099 aaKnown RBP6.74□□□□□ -1.33
LIG3-211ENST00000588713 KIF14Q15058 1648 aa6.74□□□□□ -1.33
LIG3-211ENST00000588713 MIA2Q96PC5 1412 aa6.74□□□□□ -1.33
LIG3-211ENST00000588713 SCAF11Q99590 1463 aaKnown RBP6.73□□□□□ -1.33
LIG3-211ENST00000588713 USP21Q9UK80 565 aa6.73□□□□□ -1.33
LIG3-211ENST00000588713 ATP1B4Q9UN42 357 aaPredicted RBP6.73□□□□□ -1.33
LIG3-211ENST00000588713 SAMD9Q5K651 1589 aa6.73□□□□□ -1.33
LIG3-211ENST00000588713 SPAG9O60271 1321 aaKnown RBP6.73□□□□□ -1.33
LIG3-211ENST00000588713 A2MP01023 1474 aa6.73□□□□□ -1.33
LIG3-211ENST00000588713 PZPP20742 1482 aa6.73□□□□□ -1.33
LIG3-211ENST00000588713 LTKP29376 864 aa6.72□□□□□ -1.33
LIG3-211ENST00000588713 TXNDC2Q86VQ3 553 aa6.72□□□□□ -1.33
LIG3-211ENST00000588713 TRPC5Q9UL62 973 aaPredicted RBP6.72□□□□□ -1.33
LIG3-211ENST00000588713 TIAM1Q13009 1591 aa6.72□□□□□ -1.33
LIG3-211ENST00000588713 PLXNC1O60486 1568 aa6.71□□□□□ -1.34
LIG3-211ENST00000588713 SPDYE4A6NLX3 237 aa6.71□□□□□ -1.34
LIG3-211ENST00000588713 STAG3Q9UJ98 1225 aa6.71□□□□□ -1.34
LIG3-211ENST00000588713 AHDC1Q5TGY3 1603 aaPredicted RBP6.71□□□□□ -1.34
LIG3-211ENST00000588713 ADGBQ8N7X0 1667 aa6.71□□□□□ -1.34
LIG3-211ENST00000588713 CEP350Q5VT06 3117 aa6.7□□□□□ -1.34
LIG3-211ENST00000588713 SAMD9LQ8IVG5 1584 aa6.7□□□□□ -1.34
LIG3-211ENST00000588713 GIGYF1O75420 1035 aaPredicted RBP6.7□□□□□ -1.34
LIG3-211ENST00000588713 KCNA6P17658 529 aa6.7□□□□□ -1.34
LIG3-211ENST00000588713 C14orf37Q86TY3 774 aa6.7□□□□□ -1.34
LIG3-211ENST00000588713 PPP1R1BQ9UD71 204 aaPredicted RBP6.7□□□□□ -1.34
LIG3-211ENST00000588713 ZNF777Q9ULD5 760 aaPredicted RBP6.7□□□□□ -1.34
LIG3-211ENST00000588713 PRDM15P57071 1507 aaPredicted RBP6.7□□□□□ -1.34
LIG3-211ENST00000588713 DIP2AQ14689 1571 aa6.69□□□□□ -1.34
LIG3-211ENST00000588713 PCDH10Q9P2E7 1040 aa6.69□□□□□ -1.34
LIG3-211ENST00000588713 BAG6P46379 1132 aa6.68□□□□□ -1.34
LIG3-211ENST00000588713 SLC26A8Q96RN1 970 aa6.68□□□□□ -1.34
LIG3-211ENST00000588713 EID1Q9Y6B2 187 aa6.68□□□□□ -1.34
LIG3-211ENST00000588713 WASHC2CQ9Y4E1 1318 aa6.68□□□□□ -1.34
LIG3-211ENST00000588713 RTEL1-TNFRSF6BF6WH68 1400 aa6.67□□□□□ -1.34
LIG3-211ENST00000588713 NCOA2Q15596 1464 aa6.67□□□□□ -1.34
LIG3-211ENST00000588713 CDC42BPBQ9Y5S2 1711 aa6.67□□□□□ -1.34
LIG3-211ENST00000588713 ATRNO75882 1429 aa6.67□□□□□ -1.34
LIG3-211ENST00000588713 ABCC3O15438 1527 aa6.66□□□□□ -1.34
LIG3-211ENST00000588713 KDM5AP29375 1690 aaKnown RBP6.66□□□□□ -1.34
LIG3-211ENST00000588713 CAMTA1Q9Y6Y1 1673 aa6.66□□□□□ -1.34
LIG3-211ENST00000588713 HNRNPMP52272 730 aaKnown RBP eCLIP6.66□□□□□ -1.34
LIG3-211ENST00000588713 CDK11AQ9UQ88 783 aaPredicted RBP6.66□□□□□ -1.34
LIG3-211ENST00000588713 CLIP1P30622 1438 aa6.66□□□□□ -1.34
LIG3-211ENST00000588713 NKTRP30414 1462 aaKnown RBP6.66□□□□□ -1.34
LIG3-211ENST00000588713 SYCP2Q9BX26 1530 aa6.66□□□□□ -1.34
LIG3-211ENST00000588713 KIF3BO15066 747 aa6.65□□□□□ -1.34
LIG3-211ENST00000588713 ATF3P18847 181 aa6.65□□□□□ -1.34
LIG3-211ENST00000588713 EN1Q05925 392 aaPredicted RBP6.65□□□□□ -1.34
LIG3-211ENST00000588713 LHX8Q68G74 356 aa6.65□□□□□ -1.34
LIG3-211ENST00000588713 BRINP3Q76B58 766 aa6.65□□□□□ -1.34
LIG3-211ENST00000588713 BCANQ96GW7 911 aa6.65□□□□□ -1.34
LIG3-211ENST00000588713 CREBZFQ9NS37 354 aa6.65□□□□□ -1.34
LIG3-211ENST00000588713 PNPLA6Q8IY17 1366 aa6.65□□□□□ -1.35
LIG3-211ENST00000588713 TROQ12816 1431 aaPredicted RBP6.65□□□□□ -1.35
LIG3-211ENST00000588713 MAST1Q9Y2H9 1570 aa6.65□□□□□ -1.35
LIG3-211ENST00000588713 CLCN6P51797 869 aa6.64□□□□□ -1.35
LIG3-211ENST00000588713 LRRC59Q96AG4 307 aaKnown RBP6.64□□□□□ -1.35
LIG3-211ENST00000588713 SETD5Q9C0A6 1442 aa6.64□□□□□ -1.35
LIG3-211ENST00000588713 PREX2Q70Z35 1606 aa6.64□□□□□ -1.35
LIG3-211ENST00000588713 CADPS2Q86UW7 1296 aa6.63□□□□□ -1.35
LIG3-211ENST00000588713 PELP1Q8IZL8 1130 aaKnown RBP6.63□□□□□ -1.35
LIG3-211ENST00000588713 DDX17Q92841 729 aaKnown RBP6.63□□□□□ -1.35
LIG3-211ENST00000588713 GJD4Q96KN9 370 aaPredicted RBP6.63□□□□□ -1.35
LIG3-211ENST00000588713 PRXQ9BXM0 1461 aa6.63□□□□□ -1.35
LIG3-211ENST00000588713 ARHGAP23Q9P227 1491 aa6.63□□□□□ -1.35
LIG3-211ENST00000588713 INO80Q9ULG1 1556 aaPredicted RBP6.63□□□□□ -1.35
LIG3-211ENST00000588713 NINLQ9Y2I6 1382 aa6.63□□□□□ -1.35
LIG3-211ENST00000588713 UBR1Q8IWV7 1749 aa6.62□□□□□ -1.35
LIG3-211ENST00000588713 UNC13BO14795 1591 aa6.62□□□□□ -1.35
LIG3-211ENST00000588713 SLIT1O75093 1534 aa6.62□□□□□ -1.35
LIG3-211ENST00000588713 PRELPP51888 382 aa6.62□□□□□ -1.35
LIG3-211ENST00000588713 DCBLD2Q96PD2 775 aa6.62□□□□□ -1.35
LIG3-211ENST00000588713 CAMSAP2Q08AD1 1489 aa6.61□□□□□ -1.35
LIG3-211ENST00000588713 POTEIP0CG38 1075 aa6.61□□□□□ -1.35
LIG3-211ENST00000588713 FNBP4Q8N3X1 1017 aaPredicted RBP6.61□□□□□ -1.35
LIG3-211ENST00000588713 ASXL1Q8IXJ9 1541 aa6.6□□□□□ -1.35
LIG3-211ENST00000588713 ERVK-7P63135 1459 aa6.6□□□□□ -1.35
LIG3-211ENST00000588713 COL13A1Q5TAT6 717 aaPredicted RBP6.6□□□□□ -1.35
LIG3-211ENST00000588713 TNS4Q8IZW8 715 aa6.6□□□□□ -1.35
LIG3-211ENST00000588713 ZNF579Q8NAF0 562 aaKnown RBP6.6□□□□□ -1.35
LIG3-211ENST00000588713 TMEM2Q9UHN6 1383 aa6.59□□□□□ -1.35
LIG3-211ENST00000588713 PAK3O75914 559 aaPredicted RBP6.59□□□□□ -1.35
LIG3-211ENST00000588713 SEPT12Q8IYM1 358 aa6.59□□□□□ -1.35
LIG3-211ENST00000588713 SPON1Q9HCB6 807 aa6.59□□□□□ -1.35
LIG3-211ENST00000588713 DHX29Q7Z478 1369 aaKnown RBP6.58□□□□□ -1.36
LIG3-211ENST00000588713 A0A0G2JS52 829 aa6.58□□□□□ -1.36
LIG3-211ENST00000588713 MYT1Q01538 1121 aa6.58□□□□□ -1.36
LIG3-211ENST00000588713 EZH2Q15910 746 aaKnown RBP6.58□□□□□ -1.36
LIG3-211ENST00000588713 KRT27Q7Z3Y8 459 aa6.58□□□□□ -1.36
LIG3-211ENST00000588713 C19orf44Q9H6X5 657 aa6.58□□□□□ -1.36
LIG3-211ENST00000588713 RALGAPBQ86X10 1494 aa6.58□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 48.8 ms