RNA–Protein interactions for RNA: ENST00000576222.1

PCDHGB3-201, Transcript of protocadherin gamma subfamily B, 3, humanhuman

TSL 1 (best) BASIC

Gene PCDHGB3, Length 4,727 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGB3-201ENST00000576222 NCOA1Q15788 1441 aa16.17■□□□□ 0.18
PCDHGB3-201ENST00000576222 MAPKBP1O60336 1514 aa16.17■□□□□ 0.18
PCDHGB3-201ENST00000576222 RAD54L2Q9Y4B4 1467 aa16.17■□□□□ 0.18
PCDHGB3-201ENST00000576222 KIF3BO15066 747 aa16.17■□□□□ 0.18
PCDHGB3-201ENST00000576222 UBE2Q2Q8WVN8 375 aa16.17■□□□□ 0.18
PCDHGB3-201ENST00000576222 GGT6Q6P531 493 aa16.16■□□□□ 0.18
PCDHGB3-201ENST00000576222 MTERF4Q7Z6M4 381 aaKnown RBP16.16■□□□□ 0.18
PCDHGB3-201ENST00000576222 CCDC173Q0VFZ6 552 aa16.16■□□□□ 0.18
PCDHGB3-201ENST00000576222 REC8O95072 547 aa16.15■□□□□ 0.18
PCDHGB3-201ENST00000576222 TAOK2Q9UL54 1235 aa16.15■□□□□ 0.18
PCDHGB3-201ENST00000576222 HTATSF1O43719 755 aaKnown RBP16.15■□□□□ 0.18
PCDHGB3-201ENST00000576222 NBPF1Q3BBV0 1214 aa16.15■□□□□ 0.18
PCDHGB3-201ENST00000576222 C20orf194Q5TEA3 1177 aa16.15■□□□□ 0.18
PCDHGB3-201ENST00000576222 KIF16BQ96L93 1317 aa16.15■□□□□ 0.18
PCDHGB3-201ENST00000576222 SLC4A10Q6U841 1118 aa16.14■□□□□ 0.18
PCDHGB3-201ENST00000576222 SOX12O15370 315 aa16.14■□□□□ 0.17
PCDHGB3-201ENST00000576222 KIAA1107Q9UPP5 1409 aa16.14■□□□□ 0.17
PCDHGB3-201ENST00000576222 PLEKHG5O94827 1062 aa16.14■□□□□ 0.17
PCDHGB3-201ENST00000576222 LMOD3Q0VAK6 560 aa16.13■□□□□ 0.17
PCDHGB3-201ENST00000576222 TNNT3P45378 269 aaPredicted RBP16.13■□□□□ 0.17
PCDHGB3-201ENST00000576222 RBM10P98175 930 aaKnown RBP16.13■□□□□ 0.17
PCDHGB3-201ENST00000576222 CAVIN1Q6NZI2 390 aaKnown RBP16.12■□□□□ 0.17
PCDHGB3-201ENST00000576222 TCP11L2Q8N4U5 519 aa16.12■□□□□ 0.17
PCDHGB3-201ENST00000576222 JPH4Q96JJ6 628 aa16.12■□□□□ 0.17
PCDHGB3-201ENST00000576222 STK31Q9BXU1 1019 aa16.12■□□□□ 0.17
PCDHGB3-201ENST00000576222 MAP3K1Q13233 1512 aa16.12■□□□□ 0.17
PCDHGB3-201ENST00000576222 ATP6V1DQ9Y5K8 247 aa16.11■□□□□ 0.17
PCDHGB3-201ENST00000576222 SPAG9O60271 1321 aaKnown RBP16.11■□□□□ 0.17
PCDHGB3-201ENST00000576222 EFCAB5A4FU69 1503 aa16.11■□□□□ 0.17
PCDHGB3-201ENST00000576222 CCDC39Q9UFE4 941 aa16.11■□□□□ 0.17
PCDHGB3-201ENST00000576222 ERCC6Q03468 1493 aa16.11■□□□□ 0.17
PCDHGB3-201ENST00000576222 ZNF771Q7L3S4 317 aaPredicted RBP16.1■□□□□ 0.17
PCDHGB3-201ENST00000576222 RIPK4P57078 832 aa16.1■□□□□ 0.17
PCDHGB3-201ENST00000576222 RNF214Q8ND24 703 aa16.1■□□□□ 0.17
PCDHGB3-201ENST00000576222 RILPL2Q969X0 211 aa16.1■□□□□ 0.17
PCDHGB3-201ENST00000576222 GAPVD1Q14C86 1478 aa16.09■□□□□ 0.17
PCDHGB3-201ENST00000576222 ANKRD30BQ9BXX2 1392 aa16.09■□□□□ 0.17
PCDHGB3-201ENST00000576222 EHBP1L1Q8N3D4 1523 aa16.09■□□□□ 0.17
PCDHGB3-201ENST00000576222 INTS3Q68E01 1043 aaKnown RBP16.09■□□□□ 0.17
PCDHGB3-201ENST00000576222 CDC45O75419 566 aa16.08■□□□□ 0.17
PCDHGB3-201ENST00000576222 SLFN5Q08AF3 891 aa16.08■□□□□ 0.17
PCDHGB3-201ENST00000576222 NINLQ9Y2I6 1382 aa16.08■□□□□ 0.16
PCDHGB3-201ENST00000576222 API5Q9BZZ5 524 aaKnown RBP16.07■□□□□ 0.16
PCDHGB3-201ENST00000576222 STAC3Q96MF2 364 aa16.06■□□□□ 0.16
PCDHGB3-201ENST00000576222 CIZ1Q9ULV3 898 aaPredicted RBP16.06■□□□□ 0.16
PCDHGB3-201ENST00000576222 NUTM2DQ5VT03 806 aaPredicted RBP16.05■□□□□ 0.16
PCDHGB3-201ENST00000576222 EVC2Q86UK5 1308 aa16.05■□□□□ 0.16
PCDHGB3-201ENST00000576222 PRPF40AO75400 957 aaKnown RBP16.04■□□□□ 0.16
PCDHGB3-201ENST00000576222 SUGP2Q8IX01 1082 aaKnown RBP eCLIP16.04■□□□□ 0.16
PCDHGB3-201ENST00000576222 MTHFSP49914 203 aa16.04■□□□□ 0.16
PCDHGB3-201ENST00000576222 NCAPD3P42695 1498 aa16.04■□□□□ 0.16
PCDHGB3-201ENST00000576222 DIAPH1O60610 1272 aaKnown RBP16.03■□□□□ 0.16
PCDHGB3-201ENST00000576222 MBD3O95983 291 aa16.03■□□□□ 0.16
PCDHGB3-201ENST00000576222 TPM4P67936 248 aa16.03■□□□□ 0.16
PCDHGB3-201ENST00000576222 ZSCAN30Q86W11 494 aa16.03■□□□□ 0.16
PCDHGB3-201ENST00000576222 TBC1D2Q9BYX2 928 aa16.03■□□□□ 0.16
PCDHGB3-201ENST00000576222 DIAPH3Q9NSV4 1193 aa16.03■□□□□ 0.16
PCDHGB3-201ENST00000576222 RABEP1Q15276 862 aa16.02■□□□□ 0.16
PCDHGB3-201ENST00000576222 ANO2Q9NQ90 1003 aa16.02■□□□□ 0.16
PCDHGB3-201ENST00000576222 GOLGA6L19H0YKK7 550 aa16.02■□□□□ 0.15
PCDHGB3-201ENST00000576222 K7ELQ4 463 aaPredicted RBP16.02■□□□□ 0.15
PCDHGB3-201ENST00000576222 EXOSC9Q06265 439 aaKnown RBP16.02■□□□□ 0.15
PCDHGB3-201ENST00000576222 ZNF592Q92610 1267 aa16.02■□□□□ 0.15
PCDHGB3-201ENST00000576222 MVPQ14764 893 aaKnown RBP16.02■□□□□ 0.15
PCDHGB3-201ENST00000576222 PCF11O94913 1555 aaKnown RBP16.01■□□□□ 0.15
PCDHGB3-201ENST00000576222 HMGN5P82970 282 aaKnown RBP16.01■□□□□ 0.15
PCDHGB3-201ENST00000576222 GPATCH3Q96I76 525 aa16.01■□□□□ 0.15
PCDHGB3-201ENST00000576222 DAPK1P53355 1430 aa16.01■□□□□ 0.15
PCDHGB3-201ENST00000576222 BECN2A8MW95 431 aa15.99■□□□□ 0.15
PCDHGB3-201ENST00000576222 UQCRHLA0A096LP55 91 aa15.99■□□□□ 0.15
PCDHGB3-201ENST00000576222 UQCRHP07919 91 aa15.99■□□□□ 0.15
PCDHGB3-201ENST00000576222 DUSP27Q5VZP5 1158 aa15.99■□□□□ 0.15
PCDHGB3-201ENST00000576222 ERBINQ96RT1 1412 aa15.99■□□□□ 0.15
PCDHGB3-201ENST00000576222 SUPT6HQ7KZ85 1726 aaKnown RBP15.99■□□□□ 0.15
PCDHGB3-201ENST00000576222 HSP90B1P14625 803 aaKnown RBP15.99■□□□□ 0.15
PCDHGB3-201ENST00000576222 WDR63Q8IWG1 891 aa15.99■□□□□ 0.15
PCDHGB3-201ENST00000576222 ROCK1Q13464 1354 aa15.98■□□□□ 0.15
PCDHGB3-201ENST00000576222 GNL2Q13823 731 aaKnown RBP15.98■□□□□ 0.15
PCDHGB3-201ENST00000576222 CHMP3Q9Y3E7 222 aa15.98■□□□□ 0.15
PCDHGB3-201ENST00000576222 A0A0U1RQG5 324 aaPredicted RBP15.97■□□□□ 0.15
PCDHGB3-201ENST00000576222 GCC1Q96CN9 775 aa15.97■□□□□ 0.15
PCDHGB3-201ENST00000576222 TSPY26PQ9H489 355 aa15.97■□□□□ 0.15
PCDHGB3-201ENST00000576222 PLEKHH2Q8IVE3 1493 aa15.97■□□□□ 0.15
PCDHGB3-201ENST00000576222 TSR2Q969E8 191 aaKnown RBP15.97■□□□□ 0.15
PCDHGB3-201ENST00000576222 RPRD2Q5VT52 1461 aaKnown RBP15.97■□□□□ 0.15
PCDHGB3-201ENST00000576222 GNAI1P63096 354 aa15.96■□□□□ 0.15
PCDHGB3-201ENST00000576222 NOB1Q9ULX3 412 aaKnown RBP15.96■□□□□ 0.15
PCDHGB3-201ENST00000576222 WWC1Q8IX03 1113 aa15.96■□□□□ 0.15
PCDHGB3-201ENST00000576222 CHMP4AQ9BY43 222 aa15.96■□□□□ 0.15
PCDHGB3-201ENST00000576222 CWC22Q9HCG8 908 aaKnown RBP15.96■□□□□ 0.15
PCDHGB3-201ENST00000576222 PTPN23Q9H3S7 1636 aa15.96■□□□□ 0.15
PCDHGB3-201ENST00000576222 CLCN1P35523 988 aa15.96■□□□□ 0.14
PCDHGB3-201ENST00000576222 ATF7IPQ6VMQ6 1270 aa15.96■□□□□ 0.14
PCDHGB3-201ENST00000576222 IFT57Q9NWB7 429 aa15.96■□□□□ 0.14
PCDHGB3-201ENST00000576222 AQRO60306 1485 aaKnown RBP eCLIP15.95■□□□□ 0.14
PCDHGB3-201ENST00000576222 NEK4P51957 841 aa15.95■□□□□ 0.14
PCDHGB3-201ENST00000576222 ZMYND15Q9H091 742 aa15.95■□□□□ 0.14
PCDHGB3-201ENST00000576222 PDCL3Q9H2J4 239 aa15.95■□□□□ 0.14
PCDHGB3-201ENST00000576222 SMC3Q9UQE7 1217 aa15.95■□□□□ 0.14
PCDHGB3-201ENST00000576222 HDAC5Q9UQL6 1122 aa15.95■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 10.3 ms