RNA–Protein interactions for RNA: ENST00000571805.5

VPS53-211, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,356 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-211ENST00000571805 AMER1Q5JTC6 1135 aaPredicted RBP30.33■■■□□ 2.45
VPS53-211ENST00000571805 KNSTRNQ9Y448 316 aa30.33■■■□□ 2.45
VPS53-211ENST00000571805 MYOM1P52179 1685 aa30.3■■■□□ 2.44
VPS53-211ENST00000571805 PPP2R1AP30153 589 aa30.29■■■□□ 2.44
VPS53-211ENST00000571805 ADAMTS8Q9UP79 889 aa30.28■■■□□ 2.44
VPS53-211ENST00000571805 ERICH6Q7L0X2 663 aa30.26■■■□□ 2.43
VPS53-211ENST00000571805 EIF3AQ14152 1382 aaKnown RBP30.26■■■□□ 2.43
VPS53-211ENST00000571805 ASXL2Q76L83 1435 aa30.26■■■□□ 2.43
VPS53-211ENST00000571805 MAP3K4Q9Y6R4 1608 aa30.25■■■□□ 2.43
VPS53-211ENST00000571805 UGGT1Q9NYU2 1555 aa30.25■■■□□ 2.43
VPS53-211ENST00000571805 ASXL1Q8IXJ9 1541 aa30.25■■■□□ 2.43
VPS53-211ENST00000571805 MYOM2P54296 1465 aa30.25■■■□□ 2.43
VPS53-211ENST00000571805 MYT1LQ9UL68 1186 aa30.25■■■□□ 2.43
VPS53-211ENST00000571805 KIDINS220Q9ULH0 1771 aa30.24■■■□□ 2.43
VPS53-211ENST00000571805 EFCAB6Q5THR3 1501 aa30.23■■■□□ 2.43
VPS53-211ENST00000571805 KIF1BO60333 1816 aa30.22■■■□□ 2.43
VPS53-211ENST00000571805 ABCA6Q8N139 1617 aa30.22■■■□□ 2.43
VPS53-211ENST00000571805 NPC1L1Q9UHC9 1359 aa30.22■■■□□ 2.43
VPS53-211ENST00000571805 KDM5AP29375 1690 aaKnown RBP30.21■■■□□ 2.43
VPS53-211ENST00000571805 IFT172Q9UG01 1749 aa30.2■■■□□ 2.43
VPS53-211ENST00000571805 CFAP70Q5T0N1 1121 aa30.2■■■□□ 2.42
VPS53-211ENST00000571805 PIK3C2GO75747 1445 aa30.18■■■□□ 2.42
VPS53-211ENST00000571805 ADGRF5Q8IZF2 1346 aa30.18■■■□□ 2.42
VPS53-211ENST00000571805 PPRC1Q5VV67 1664 aaKnown RBP30.18■■■□□ 2.42
VPS53-211ENST00000571805 LMTK2Q8IWU2 1503 aa30.17■■■□□ 2.42
VPS53-211ENST00000571805 MROH2AA6NES4 1674 aa30.15■■■□□ 2.42
VPS53-211ENST00000571805 ERVK-7P63135 1459 aa30.15■■■□□ 2.42
VPS53-211ENST00000571805 WDR43Q15061 677 aaKnown RBP eCLIP30.15■■■□□ 2.42
VPS53-211ENST00000571805 PLIN1O60240 522 aa30.14■■■□□ 2.42
VPS53-211ENST00000571805 PLEKHH1Q9ULM0 1364 aa30.14■■■□□ 2.42
VPS53-211ENST00000571805 NRXN1Q9ULB1 1477 aa30.14■■■□□ 2.41
VPS53-211ENST00000571805 SLC24A1O60721 1099 aa30.13■■■□□ 2.41
VPS53-211ENST00000571805 ZNF518AQ6AHZ1 1483 aa30.13■■■□□ 2.41
VPS53-211ENST00000571805 ZNF521Q96K83 1311 aa30.12■■■□□ 2.41
VPS53-211ENST00000571805 TCERG1O14776 1098 aaKnown RBP30.08■■■□□ 2.41
VPS53-211ENST00000571805 NOP58Q9Y2X3 529 aaKnown RBP30.08■■■□□ 2.41
VPS53-211ENST00000571805 MYO3AQ8NEV4 1616 aa30.08■■■□□ 2.41
VPS53-211ENST00000571805 DUSP27Q5VZP5 1158 aa30.07■■■□□ 2.4
VPS53-211ENST00000571805 CRBNQ96SW2 442 aa30.06■■■□□ 2.4
VPS53-211ENST00000571805 ADGRB3O60242 1522 aa30.06■■■□□ 2.4
VPS53-211ENST00000571805 ANP32AP39687 249 aaKnown RBP30.04■■■□□ 2.4
VPS53-211ENST00000571805 CARD14Q9BXL6 1004 aa30.04■■■□□ 2.4
VPS53-211ENST00000571805 SBNO2Q9Y2G9 1366 aa30.03■■■□□ 2.4
VPS53-211ENST00000571805 PAK3O75914 559 aaPredicted RBP30.03■■■□□ 2.4
VPS53-211ENST00000571805 IPO9Q96P70 1041 aaKnown RBP30.03■■■□□ 2.4
VPS53-211ENST00000571805 SETBP1Q9Y6X0 1596 aa30.02■■■□□ 2.4
VPS53-211ENST00000571805 NOS1P29475 1434 aa30.02■■■□□ 2.4
VPS53-211ENST00000571805 GOLGA2Q08379 1002 aa30.01■■■□□ 2.4
VPS53-211ENST00000571805 FRMPD1Q5SYB0 1578 aa30.01■■■□□ 2.39
VPS53-211ENST00000571805 POGZQ7Z3K3 1410 aa30■■■□□ 2.39
VPS53-211ENST00000571805 C20orf194Q5TEA3 1177 aa29.99■■■□□ 2.39
VPS53-211ENST00000571805 MS4A1P11836 297 aa29.99■■■□□ 2.39
VPS53-211ENST00000571805 NPATQ14207 1427 aa29.99■■■□□ 2.39
VPS53-211ENST00000571805 MLH3Q9UHC1 1453 aa29.99■■■□□ 2.39
VPS53-211ENST00000571805 CFAP74Q9C0B2 1584 aa29.98■■■□□ 2.39
VPS53-211ENST00000571805 CD109Q6YHK3 1445 aa29.97■■■□□ 2.39
VPS53-211ENST00000571805 SLFN5Q08AF3 891 aa29.97■■■□□ 2.39
VPS53-211ENST00000571805 PPLO60437 1756 aa29.97■■■□□ 2.39
VPS53-211ENST00000571805 NPM1P06748 294 aaKnown RBP eCLIP29.96■■■□□ 2.39
VPS53-211ENST00000571805 TRMT2AQ8IZ69 625 aaKnown RBP29.96■■■□□ 2.39
VPS53-211ENST00000571805 PDE4AP27815 886 aa29.95■■■□□ 2.39
VPS53-211ENST00000571805 CFAP65Q6ZU64 1925 aaKnown RBP29.95■■■□□ 2.38
VPS53-211ENST00000571805 CCDC146Q8IYE0 955 aa29.95■■■□□ 2.38
VPS53-211ENST00000571805 CENPJQ9HC77 1338 aaPredicted RBP29.94■■■□□ 2.38
VPS53-211ENST00000571805 BACH2Q9BYV9 841 aa29.93■■■□□ 2.38
VPS53-211ENST00000571805 HECW2Q9P2P5 1572 aa29.93■■■□□ 2.38
VPS53-211ENST00000571805 C14orf93Q9H972 538 aaKnown RBP29.92■■■□□ 2.38
VPS53-211ENST00000571805 CHGAP10645 457 aaKnown RBP29.92■■■□□ 2.38
VPS53-211ENST00000571805 ZC3H13Q5T200 1668 aaKnown RBP29.91■■■□□ 2.38
VPS53-211ENST00000571805 ADGRB1O14514 1584 aa29.9■■■□□ 2.38
VPS53-211ENST00000571805 APAF1O14727 1248 aa29.9■■■□□ 2.38
VPS53-211ENST00000571805 GGT6Q6P531 493 aa29.9■■■□□ 2.38
VPS53-211ENST00000571805 OSCARQ8IYS5 282 aa29.88■■■□□ 2.37
VPS53-211ENST00000571805 SPINK5Q9NQ38 1064 aaPredicted RBP29.88■■■□□ 2.37
VPS53-211ENST00000571805 ABCC3O15438 1527 aa29.87■■■□□ 2.37
VPS53-211ENST00000571805 TRAK1Q9UPV9 953 aa29.87■■■□□ 2.37
VPS53-211ENST00000571805 KDM2BQ8NHM5 1336 aa29.87■■■□□ 2.37
VPS53-211ENST00000571805 QRICH2Q9H0J4 1663 aa29.87■■■□□ 2.37
VPS53-211ENST00000571805 ZBTB47Q9UFB7 747 aaPredicted RBP29.86■■■□□ 2.37
VPS53-211ENST00000571805 RPGRIP1LQ68CZ1 1315 aa29.86■■■□□ 2.37
VPS53-211ENST00000571805 POLR3AO14802 1390 aaPredicted RBP29.86■■■□□ 2.37
VPS53-211ENST00000571805 GOLGA6L2Q8N9W4 650 aaPredicted RBP29.83■■■□□ 2.37
VPS53-211ENST00000571805 NKTRP30414 1462 aaKnown RBP29.82■■■□□ 2.36
VPS53-211ENST00000571805 SKAP1Q86WV1 359 aa29.82■■■□□ 2.36
VPS53-211ENST00000571805 NGEFQ8N5V2 710 aa29.82■■■□□ 2.36
VPS53-211ENST00000571805 NSD3Q9BZ95 1437 aa29.81■■■□□ 2.36
VPS53-211ENST00000571805 CAMSAP1Q5T5Y3 1602 aa29.81■■■□□ 2.36
VPS53-211ENST00000571805 SIGLEC1Q9BZZ2 1709 aa29.81■■■□□ 2.36
VPS53-211ENST00000571805 TMEM132EQ6IEE7 984 aa29.81■■■□□ 2.36
VPS53-211ENST00000571805 E9PSI1 815 aa29.79■■■□□ 2.36
VPS53-211ENST00000571805 SLC12A5Q9H2X9 1139 aa29.79■■■□□ 2.36
VPS53-211ENST00000571805 PIK3C2BO00750 1634 aa29.78■■■□□ 2.36
VPS53-211ENST00000571805 SHPRHQ149N8 1683 aa29.77■■■□□ 2.36
VPS53-211ENST00000571805 CENPQQ7L2Z9 268 aaPredicted RBP29.77■■■□□ 2.36
VPS53-211ENST00000571805 NPM2Q86SE8 214 aaKnown RBP29.77■■■□□ 2.36
VPS53-211ENST00000571805 DMRT2Q9Y5R5 561 aa29.77■■■□□ 2.36
VPS53-211ENST00000571805 NEO1Q92859 1461 aa29.75■■■□□ 2.35
VPS53-211ENST00000571805 MORC1Q86VD1 984 aa29.75■■■□□ 2.35
VPS53-211ENST00000571805 USP32Q8NFA0 1604 aa29.75■■■□□ 2.35
VPS53-211ENST00000571805 RAPGEF3O95398 923 aa29.73■■■□□ 2.35
Retrieved 100 of 20,778 RNA–protein pairs in 9 ms