RNA–Protein interactions for RNA: ENST00000568605.5

CLK3-224, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 1,047 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-224ENST00000568605 STRCP1A6NGW2 1772 aa19.26■□□□□ 0.67
CLK3-224ENST00000568605 IQSEC2Q5JU85 1478 aa19.25■□□□□ 0.67
CLK3-224ENST00000568605 HDGFP51858 240 aaKnown RBP19.25■□□□□ 0.67
CLK3-224ENST00000568605 CCDC144AA2RUR9 1427 aa19.25■□□□□ 0.67
CLK3-224ENST00000568605 MPHOSPH9Q99550 1183 aa19.24■□□□□ 0.67
CLK3-224ENST00000568605 NEXMIFQ5QGS0 1516 aa19.24■□□□□ 0.67
CLK3-224ENST00000568605 CHD2O14647 1828 aaKnown RBP19.23■□□□□ 0.67
CLK3-224ENST00000568605 HRCP23327 699 aa19.22■□□□□ 0.67
CLK3-224ENST00000568605 PPP1R15AO75807 674 aaPredicted RBP19.21■□□□□ 0.67
CLK3-224ENST00000568605 LTKP29376 864 aa19.21■□□□□ 0.67
CLK3-224ENST00000568605 ABCF1Q8NE71 845 aaKnown RBP eCLIP19.21■□□□□ 0.67
CLK3-224ENST00000568605 PLEKHG1Q9ULL1 1385 aa19.2■□□□□ 0.66
CLK3-224ENST00000568605 NWD1Q149M9 1564 aa19.19■□□□□ 0.66
CLK3-224ENST00000568605 ZNF335Q9H4Z2 1342 aaPredicted RBP19.19■□□□□ 0.66
CLK3-224ENST00000568605 SETBP1Q9Y6X0 1596 aa19.19■□□□□ 0.66
CLK3-224ENST00000568605 NRXN3Q9Y4C0 1643 aa19.18■□□□□ 0.66
CLK3-224ENST00000568605 XIRP1Q702N8 1843 aaKnown RBP19.17■□□□□ 0.66
CLK3-224ENST00000568605 ZNF326Q5BKZ1 582 aaKnown RBP19.17■□□□□ 0.66
CLK3-224ENST00000568605 CERKQ8TCT0 537 aa19.17■□□□□ 0.66
CLK3-224ENST00000568605 FOXD1Q16676 465 aa19.15■□□□□ 0.66
CLK3-224ENST00000568605 SETD1AO15047 1707 aaKnown RBP19.14■□□□□ 0.66
CLK3-224ENST00000568605 BCANQ96GW7 911 aa19.14■□□□□ 0.65
CLK3-224ENST00000568605 NKTRP30414 1462 aaKnown RBP19.14■□□□□ 0.65
CLK3-224ENST00000568605 TRIM26Q12899 539 aaPredicted RBP19.12■□□□□ 0.65
CLK3-224ENST00000568605 LAMC1P11047 1609 aa19.11■□□□□ 0.65
CLK3-224ENST00000568605 SPATA31E1Q6ZUB1 1445 aa19.1■□□□□ 0.65
CLK3-224ENST00000568605 XRN1Q8IZH2 1706 aaKnown RBP19.1■□□□□ 0.65
CLK3-224ENST00000568605 RPGRIP1LQ68CZ1 1315 aa19.09■□□□□ 0.65
CLK3-224ENST00000568605 ADAMTS13Q76LX8 1427 aa19.08■□□□□ 0.65
CLK3-224ENST00000568605 PIK3R4Q99570 1358 aa19.07■□□□□ 0.64
CLK3-224ENST00000568605 LRRC7Q96NW7 1537 aa19.07■□□□□ 0.64
CLK3-224ENST00000568605 NUTM2DQ5VT03 806 aaPredicted RBP19.07■□□□□ 0.64
CLK3-224ENST00000568605 FBXO41Q8TF61 875 aa19.07■□□□□ 0.64
CLK3-224ENST00000568605 SLC26A8Q96RN1 970 aa19.07■□□□□ 0.64
CLK3-224ENST00000568605 ANKRD30BQ9BXX2 1392 aa19.06■□□□□ 0.64
CLK3-224ENST00000568605 VGFO15240 615 aaPredicted RBP19.05■□□□□ 0.64
CLK3-224ENST00000568605 ALKQ9UM73 1620 aa19.03■□□□□ 0.64
CLK3-224ENST00000568605 MYOM2P54296 1465 aa19.03■□□□□ 0.64
CLK3-224ENST00000568605 TBX22Q9Y458 520 aa19.03■□□□□ 0.64
CLK3-224ENST00000568605 KNDC1Q76NI1 1749 aa19.03■□□□□ 0.64
CLK3-224ENST00000568605 KCNA6P17658 529 aa19.01■□□□□ 0.63
CLK3-224ENST00000568605 SENP3Q9H4L4 574 aaPredicted RBP19.01■□□□□ 0.63
CLK3-224ENST00000568605 RGL3Q3MIN7 710 aa18.99■□□□□ 0.63
CLK3-224ENST00000568605 ILDR1Q86SU0 546 aaPredicted RBP18.97■□□□□ 0.63
CLK3-224ENST00000568605 PIK3C2GO75747 1445 aa18.97■□□□□ 0.63
CLK3-224ENST00000568605 NALCNQ8IZF0 1738 aa18.97■□□□□ 0.63
CLK3-224ENST00000568605 SIPA1L2Q9P2F8 1722 aaPredicted RBP18.96■□□□□ 0.63
CLK3-224ENST00000568605 NRXN1Q9ULB1 1477 aa18.96■□□□□ 0.63
CLK3-224ENST00000568605 KIAA1210Q9ULL0 1709 aa18.95■□□□□ 0.62
CLK3-224ENST00000568605 TMEM94Q12767 1356 aa18.94■□□□□ 0.62
CLK3-224ENST00000568605 NCOA3Q9Y6Q9 1424 aa18.93■□□□□ 0.62
CLK3-224ENST00000568605 UBAP1LF5GYI3 381 aa18.93■□□□□ 0.62
CLK3-224ENST00000568605 PROSER2Q86WR7 435 aaPredicted RBP18.93■□□□□ 0.62
CLK3-224ENST00000568605 PRAG1Q86YV5 1406 aa18.92■□□□□ 0.62
CLK3-224ENST00000568605 PTPRUQ92729 1446 aa18.92■□□□□ 0.62
CLK3-224ENST00000568605 TOM1O60784 492 aa18.92■□□□□ 0.62
CLK3-224ENST00000568605 METP08581 1390 aa18.92■□□□□ 0.62
CLK3-224ENST00000568605 MSH6P52701 1360 aa18.92■□□□□ 0.62
CLK3-224ENST00000568605 PTCH1Q13635 1447 aa18.91■□□□□ 0.62
CLK3-224ENST00000568605 DHX57Q6P158 1386 aaKnown RBP18.91■□□□□ 0.62
CLK3-224ENST00000568605 ASXL1Q8IXJ9 1541 aa18.9■□□□□ 0.62
CLK3-224ENST00000568605 ADGRF5Q8IZF2 1346 aa18.9■□□□□ 0.62
CLK3-224ENST00000568605 STAC3Q96MF2 364 aa18.89■□□□□ 0.61
CLK3-224ENST00000568605 AMOTL2Q9Y2J4 779 aa18.89■□□□□ 0.61
CLK3-224ENST00000568605 ROBO1Q9Y6N7 1651 aa18.89■□□□□ 0.61
CLK3-224ENST00000568605 DCCP43146 1447 aa18.86■□□□□ 0.61
CLK3-224ENST00000568605 C14orf37Q86TY3 774 aa18.86■□□□□ 0.61
CLK3-224ENST00000568605 SCAF1Q9H7N4 1312 aaKnown RBP18.85■□□□□ 0.61
CLK3-224ENST00000568605 TECPR2O15040 1411 aa18.84■□□□□ 0.61
CLK3-224ENST00000568605 ADGRL3Q9HAR2 1447 aa18.84■□□□□ 0.61
CLK3-224ENST00000568605 ARHGEF28Q8N1W1 1705 aaKnown RBP18.84■□□□□ 0.61
CLK3-224ENST00000568605 DCAF11Q8TEB1 546 aa18.83■□□□□ 0.6
CLK3-224ENST00000568605 CDC42BPGQ6DT37 1551 aa18.82■□□□□ 0.6
CLK3-224ENST00000568605 YTHDC2Q9H6S0 1430 aaKnown RBP18.82■□□□□ 0.6
CLK3-224ENST00000568605 LRPPRCP42704 1394 aaKnown RBP18.81■□□□□ 0.6
CLK3-224ENST00000568605 ADGRB1O14514 1584 aa18.81■□□□□ 0.6
CLK3-224ENST00000568605 TRPM1Q7Z4N2 1603 aa18.81■□□□□ 0.6
CLK3-224ENST00000568605 PHLPP1O60346 1717 aa18.8■□□□□ 0.6
CLK3-224ENST00000568605 DLC1Q96QB1 1528 aa18.8■□□□□ 0.6
CLK3-224ENST00000568605 PIP4K2BP78356 416 aa18.8■□□□□ 0.6
CLK3-224ENST00000568605 RBM33Q96EV2 1170 aaKnown RBP18.8■□□□□ 0.6
CLK3-224ENST00000568605 C14orf93Q9H972 538 aaKnown RBP18.79■□□□□ 0.6
CLK3-224ENST00000568605 FMN2Q9NZ56 1722 aa18.78■□□□□ 0.6
CLK3-224ENST00000568605 C19orf44Q9H6X5 657 aa18.78■□□□□ 0.6
CLK3-224ENST00000568605 KDM2AQ9Y2K7 1162 aa18.78■□□□□ 0.6
CLK3-224ENST00000568605 ROBO2Q9HCK4 1378 aa18.78■□□□□ 0.6
CLK3-224ENST00000568605 ATF3P18847 181 aa18.77■□□□□ 0.6
CLK3-224ENST00000568605 CADPS2Q86UW7 1296 aa18.77■□□□□ 0.6
CLK3-224ENST00000568605 PCGF6Q9BYE7 350 aa18.77■□□□□ 0.6
CLK3-224ENST00000568605 ABCC11Q96J66 1382 aa18.77■□□□□ 0.6
CLK3-224ENST00000568605 FAM135BQ49AJ0 1406 aa18.76■□□□□ 0.59
CLK3-224ENST00000568605 NHSL1Q5SYE7 1610 aa18.76■□□□□ 0.59
CLK3-224ENST00000568605 CFAP70Q5T0N1 1121 aa18.75■□□□□ 0.59
CLK3-224ENST00000568605 ADGRB2O60241 1585 aa18.75■□□□□ 0.59
CLK3-224ENST00000568605 RGPD8O14715 1765 aaPredicted RBP18.73■□□□□ 0.59
CLK3-224ENST00000568605 NEUROD1Q13562 356 aa18.73■□□□□ 0.59
CLK3-224ENST00000568605 TMEM132EQ6IEE7 984 aa18.73■□□□□ 0.59
CLK3-224ENST00000568605 SIN3AQ96ST3 1273 aa18.73■□□□□ 0.59
CLK3-224ENST00000568605 ITSN1Q15811 1721 aa18.72■□□□□ 0.59
CLK3-224ENST00000568605 TONSLQ96HA7 1378 aa18.72■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms