RNA–Protein interactions for RNA: ENST00000568029.5

VPS39-209, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 5

Gene VPS39, Length 791 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-209ENST00000568029 CUX1P39880 1505 aa10.02□□□□□ -0.8
VPS39-209ENST00000568029 ST18O60284 1047 aa10.02□□□□□ -0.81
VPS39-209ENST00000568029 PDE4DQ08499 809 aa10.02□□□□□ -0.81
VPS39-209ENST00000568029 KDM6BO15054 1643 aa10.01□□□□□ -0.81
VPS39-209ENST00000568029 CDAN1Q8IWY9 1227 aa10.01□□□□□ -0.81
VPS39-209ENST00000568029 TTC13Q8NBP0 860 aa10.01□□□□□ -0.81
VPS39-209ENST00000568029 DIP2BQ9P265 1576 aa10.01□□□□□ -0.81
VPS39-209ENST00000568029 SHROOM2Q13796 1616 aa10□□□□□ -0.81
VPS39-209ENST00000568029 ABCA5Q8WWZ7 1642 aa10□□□□□ -0.81
VPS39-209ENST00000568029 HECW2Q9P2P5 1572 aa10□□□□□ -0.81
VPS39-209ENST00000568029 PPP1R3GB7ZBB8 358 aa9.98□□□□□ -0.81
VPS39-209ENST00000568029 PRSS12P56730 875 aa9.98□□□□□ -0.81
VPS39-209ENST00000568029 TSPOAP1O95153 1857 aa9.98□□□□□ -0.81
VPS39-209ENST00000568029 OATP04181 439 aa9.97□□□□□ -0.81
VPS39-209ENST00000568029 PTPREP23469 700 aa9.97□□□□□ -0.81
VPS39-209ENST00000568029 ADAMTS12P58397 1594 aa9.97□□□□□ -0.81
VPS39-209ENST00000568029 KDM4CQ9H3R0 1056 aa9.96□□□□□ -0.82
VPS39-209ENST00000568029 GRIN2AQ12879 1464 aa9.96□□□□□ -0.82
VPS39-209ENST00000568029 PADI6Q6TGC4 694 aa9.95□□□□□ -0.82
VPS39-209ENST00000568029 ABCC10Q5T3U5 1492 aa9.94□□□□□ -0.82
VPS39-209ENST00000568029 ONECUT3O60422 494 aaPredicted RBP9.94□□□□□ -0.82
VPS39-209ENST00000568029 CDCA7LQ96GN5 454 aa9.94□□□□□ -0.82
VPS39-209ENST00000568029 ADGRG1Q9Y653 693 aa9.94□□□□□ -0.82
VPS39-209ENST00000568029 ADGRL1O94910 1474 aa9.93□□□□□ -0.82
VPS39-209ENST00000568029 NUP160Q12769 1436 aa9.93□□□□□ -0.82
VPS39-209ENST00000568029 PARP9Q8IXQ6 854 aa9.93□□□□□ -0.82
VPS39-209ENST00000568029 GPBP1L1Q9HC44 474 aaPredicted RBP9.93□□□□□ -0.82
VPS39-209ENST00000568029 ADCY10Q96PN6 1610 aa9.93□□□□□ -0.82
VPS39-209ENST00000568029 COL9A1P20849 921 aa9.92□□□□□ -0.82
VPS39-209ENST00000568029 METTL3Q86U44 580 aaKnown RBP9.92□□□□□ -0.82
VPS39-209ENST00000568029 KCNH8Q96L42 1107 aa9.92□□□□□ -0.82
VPS39-209ENST00000568029 TMUB1Q9BVT8 246 aa9.92□□□□□ -0.82
VPS39-209ENST00000568029 CLCN1P35523 988 aa9.91□□□□□ -0.82
VPS39-209ENST00000568029 FAM69CQ0P6D2 419 aa9.91□□□□□ -0.82
VPS39-209ENST00000568029 PXYLP1Q8TE99 480 aa9.91□□□□□ -0.82
VPS39-209ENST00000568029 MAPKBP1O60336 1514 aa9.91□□□□□ -0.82
VPS39-209ENST00000568029 ERBB3P21860 1342 aa9.89□□□□□ -0.83
VPS39-209ENST00000568029 PBX2P40425 430 aa9.89□□□□□ -0.83
VPS39-209ENST00000568029 TTLL12Q14166 644 aaPredicted RBP9.89□□□□□ -0.83
VPS39-209ENST00000568029 RBM46Q8TBY0 533 aaKnown RBP9.89□□□□□ -0.83
VPS39-209ENST00000568029 DDRGK1Q96HY6 314 aa9.89□□□□□ -0.83
VPS39-209ENST00000568029 PPRC1Q5VV67 1664 aaKnown RBP9.89□□□□□ -0.83
VPS39-209ENST00000568029 ABCA10Q8WWZ4 1543 aa9.88□□□□□ -0.83
VPS39-209ENST00000568029 TRIM6-TRIM34B2RNG4 842 aa9.88□□□□□ -0.83
VPS39-209ENST00000568029 PHOX2BQ99453 314 aa9.88□□□□□ -0.83
VPS39-209ENST00000568029 SLC4A5Q9BY07 1137 aa9.88□□□□□ -0.83
VPS39-209ENST00000568029 GPCPD1Q9NPB8 672 aa9.88□□□□□ -0.83
VPS39-209ENST00000568029 EMP3P54852 163 aa9.87□□□□□ -0.83
VPS39-209ENST00000568029 VARS2Q5ST30 1063 aaKnown RBP9.87□□□□□ -0.83
VPS39-209ENST00000568029 KCNK17Q96T54 332 aa9.87□□□□□ -0.83
VPS39-209ENST00000568029 FAM198AQ9UFP1 575 aa9.87□□□□□ -0.83
VPS39-209ENST00000568029 NBPF26B4DH59 902 aa9.86□□□□□ -0.83
VPS39-209ENST00000568029 ARHGAP33O14559 1287 aa9.86□□□□□ -0.83
VPS39-209ENST00000568029 GIGYF2Q6Y7W6 1299 aaKnown RBP9.86□□□□□ -0.83
VPS39-209ENST00000568029 PACS2Q86VP3 889 aa9.86□□□□□ -0.83
VPS39-209ENST00000568029 PRG4Q92954 1404 aaPredicted RBP9.86□□□□□ -0.83
VPS39-209ENST00000568029 TSKSQ9UJT2 592 aa9.86□□□□□ -0.83
VPS39-209ENST00000568029 RUSC2Q8N2Y8 1516 aa9.86□□□□□ -0.83
VPS39-209ENST00000568029 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP9.85□□□□□ -0.83
VPS39-209ENST00000568029 EYA1Q99502 592 aa9.85□□□□□ -0.83
VPS39-209ENST00000568029 ZNF687Q8N1G0 1237 aa9.84□□□□□ -0.83
VPS39-209ENST00000568029 ZBED2Q9BTP6 218 aa9.84□□□□□ -0.83
VPS39-209ENST00000568029 MDM2Q00987 491 aaPredicted RBP9.83□□□□□ -0.84
VPS39-209ENST00000568029 FAM161AQ3B820 660 aa9.83□□□□□ -0.84
VPS39-209ENST00000568029 MARVELD3Q96A59 401 aa9.83□□□□□ -0.84
VPS39-209ENST00000568029 FAM117AQ9C073 453 aa9.83□□□□□ -0.84
VPS39-209ENST00000568029 TATDN2Q93075 761 aa9.82□□□□□ -0.84
VPS39-209ENST00000568029 REPIN1Q9BWE0 567 aaKnown RBP9.82□□□□□ -0.84
VPS39-209ENST00000568029 GTF3C3Q9Y5Q9 886 aa9.82□□□□□ -0.84
VPS39-209ENST00000568029 IL27Q8NEV9 243 aa9.81□□□□□ -0.84
VPS39-209ENST00000568029 GOPCQ9HD26 462 aa9.81□□□□□ -0.84
VPS39-209ENST00000568029 FAM217BQ9NTX9 383 aaPredicted RBP9.81□□□□□ -0.84
VPS39-209ENST00000568029 COL17A1Q9UMD9 1497 aaPredicted RBP9.8□□□□□ -0.84
VPS39-209ENST00000568029 PLEKHG3A1L390 1219 aa9.8□□□□□ -0.84
VPS39-209ENST00000568029 MS4A1P11836 297 aa9.8□□□□□ -0.84
VPS39-209ENST00000568029 POTEEQ6S8J3 1075 aa9.8□□□□□ -0.84
VPS39-209ENST00000568029 NUDT18Q6ZVK8 323 aa9.8□□□□□ -0.84
VPS39-209ENST00000568029 RABGEF1Q9UJ41 708 aa9.8□□□□□ -0.84
VPS39-209ENST00000568029 RCCD1A6NED2 376 aa9.79□□□□□ -0.84
VPS39-209ENST00000568029 DNAJB2P25686 324 aa9.79□□□□□ -0.84
VPS39-209ENST00000568029 PSEN2P49810 448 aa9.79□□□□□ -0.84
VPS39-209ENST00000568029 PROX2Q3B8N5 592 aa9.79□□□□□ -0.84
VPS39-209ENST00000568029 FAM205CA6NFA0 338 aa9.78□□□□□ -0.84
VPS39-209ENST00000568029 SSTR3P32745 418 aaPredicted RBP9.78□□□□□ -0.84
VPS39-209ENST00000568029 ERICH6Q7L0X2 663 aa9.78□□□□□ -0.84
VPS39-209ENST00000568029 PNMA3Q9UL41 463 aa9.78□□□□□ -0.84
VPS39-209ENST00000568029 FHAD1B1AJZ9 1412 aa9.78□□□□□ -0.84
VPS39-209ENST00000568029 HS3ST6Q96QI5 342 aa9.77□□□□□ -0.85
VPS39-209ENST00000568029 KIAA1468Q9P260 1216 aa9.77□□□□□ -0.85
VPS39-209ENST00000568029 C3orf80F5H4A9 247 aa9.76□□□□□ -0.85
VPS39-209ENST00000568029 TK2O00142 265 aa9.76□□□□□ -0.85
VPS39-209ENST00000568029 SPNS2Q8IVW8 549 aa9.76□□□□□ -0.85
VPS39-209ENST00000568029 TMEM134Q9H6X4 195 aa9.76□□□□□ -0.85
VPS39-209ENST00000568029 MMRN1Q13201 1228 aa9.75□□□□□ -0.85
VPS39-209ENST00000568029 SULF1Q8IWU6 871 aa9.75□□□□□ -0.85
VPS39-209ENST00000568029 FBXO41Q8TF61 875 aa9.75□□□□□ -0.85
VPS39-209ENST00000568029 VPS9D1Q9Y2B5 631 aa9.75□□□□□ -0.85
VPS39-209ENST00000568029 DMRTA1Q5VZB9 504 aa9.74□□□□□ -0.85
VPS39-209ENST00000568029 CUL7Q14999 1698 aa9.74□□□□□ -0.85
VPS39-209ENST00000568029 LMTK3Q96Q04 1460 aa9.73□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms