RNA–Protein interactions for RNA: ENST00000566082.1

USB1-212, Transcript of U6 snRNA biogenesis phosphodiesterase 1, humanhuman

TSL 2

Gene USB1, Length 3,888 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USB1-212ENST00000566082 ERBINQ96RT1 1412 aa13.17□□□□□ -0.3
USB1-212ENST00000566082 RNF123Q5XPI4 1314 aa13.17□□□□□ -0.3
USB1-212ENST00000566082 KIF21AQ7Z4S6 1674 aa13.16□□□□□ -0.3
USB1-212ENST00000566082 FOXD4L5Q5VV16 416 aaPredicted RBP13.16□□□□□ -0.3
USB1-212ENST00000566082 NGEFQ8N5V2 710 aa13.16□□□□□ -0.3
USB1-212ENST00000566082 FOXD4L4Q8WXT5 416 aaPredicted RBP13.16□□□□□ -0.3
USB1-212ENST00000566082 GRIN2BQ13224 1484 aa13.16□□□□□ -0.3
USB1-212ENST00000566082 PTMSP20962 102 aa13.15□□□□□ -0.3
USB1-212ENST00000566082 CFAP70Q5T0N1 1121 aa13.15□□□□□ -0.3
USB1-212ENST00000566082 UGGT2Q9NYU1 1516 aa13.15□□□□□ -0.3
USB1-212ENST00000566082 MRE11P49959 708 aa13.14□□□□□ -0.31
USB1-212ENST00000566082 DDX19BQ9UMR2 479 aa13.14□□□□□ -0.31
USB1-212ENST00000566082 SNAPC4Q5SXM2 1469 aa13.14□□□□□ -0.31
USB1-212ENST00000566082 PTPRGP23470 1445 aa13.14□□□□□ -0.31
USB1-212ENST00000566082 MTHFSP49914 203 aa13.14□□□□□ -0.31
USB1-212ENST00000566082 CUL7Q14999 1698 aa13.13□□□□□ -0.31
USB1-212ENST00000566082 SOX12O15370 315 aa13.13□□□□□ -0.31
USB1-212ENST00000566082 NOL8Q76FK4 1167 aaKnown RBP13.13□□□□□ -0.31
USB1-212ENST00000566082 ESF1Q9H501 851 aaKnown RBP13.13□□□□□ -0.31
USB1-212ENST00000566082 MCM4P33991 863 aa13.13□□□□□ -0.31
USB1-212ENST00000566082 IGHDP01880 384 aa13.12□□□□□ -0.31
USB1-212ENST00000566082 C8orf34Q49A92 452 aa13.12□□□□□ -0.31
USB1-212ENST00000566082 PLPPR3Q6T4P5 718 aa13.12□□□□□ -0.31
USB1-212ENST00000566082 THOC2Q8NI27 1593 aaKnown RBP13.12□□□□□ -0.31
USB1-212ENST00000566082 CAMSAP2Q08AD1 1489 aa13.12□□□□□ -0.31
USB1-212ENST00000566082 SKOR2Q2VWA4 1001 aaPredicted RBP13.11□□□□□ -0.31
USB1-212ENST00000566082 TSR2Q969E8 191 aaKnown RBP13.11□□□□□ -0.31
USB1-212ENST00000566082 DISP3Q9P2K9 1392 aa13.1□□□□□ -0.31
USB1-212ENST00000566082 HDGFL2Q7Z4V5 671 aaPredicted RBP13.1□□□□□ -0.31
USB1-212ENST00000566082 FOXD4L6Q3SYB3 417 aaPredicted RBP13.1□□□□□ -0.31
USB1-212ENST00000566082 FOXD4L3Q6VB84 417 aaPredicted RBP13.1□□□□□ -0.31
USB1-212ENST00000566082 WWC1Q8IX03 1113 aa13.1□□□□□ -0.31
USB1-212ENST00000566082 RIPK4P57078 832 aa13.09□□□□□ -0.31
USB1-212ENST00000566082 TBC1D2Q9BYX2 928 aa13.09□□□□□ -0.31
USB1-212ENST00000566082 SLC12A5Q9H2X9 1139 aa13.09□□□□□ -0.31
USB1-212ENST00000566082 IQGAP2Q13576 1575 aa13.09□□□□□ -0.31
USB1-212ENST00000566082 PLEKHG5O94827 1062 aa13.09□□□□□ -0.31
USB1-212ENST00000566082 EXOSC9Q06265 439 aaKnown RBP13.09□□□□□ -0.31
USB1-212ENST00000566082 TMEM132EQ6IEE7 984 aa13.08□□□□□ -0.32
USB1-212ENST00000566082 SUGP2Q8IX01 1082 aaKnown RBP eCLIP13.08□□□□□ -0.32
USB1-212ENST00000566082 WDR62O43379 1518 aa13.08□□□□□ -0.32
USB1-212ENST00000566082 LRPPRCP42704 1394 aaKnown RBP13.08□□□□□ -0.32
USB1-212ENST00000566082 PARD3Q8TEW0 1356 aa13.08□□□□□ -0.32
USB1-212ENST00000566082 AAMPQ13685 434 aa13.07□□□□□ -0.32
USB1-212ENST00000566082 FAM13BQ9NYF5 915 aa13.07□□□□□ -0.32
USB1-212ENST00000566082 TERF2IPQ9NYB0 399 aa13.07□□□□□ -0.32
USB1-212ENST00000566082 TEX14Q8IWB6 1497 aa13.07□□□□□ -0.32
USB1-212ENST00000566082 IFT140Q96RY7 1462 aa13.07□□□□□ -0.32
USB1-212ENST00000566082 AFAP1Q8N556 730 aa13.07□□□□□ -0.32
USB1-212ENST00000566082 CFAP44Q96MT7 982 aa13.07□□□□□ -0.32
USB1-212ENST00000566082 GRPEL1Q9HAV7 217 aa13.07□□□□□ -0.32
USB1-212ENST00000566082 MCCP23508 829 aa13.06□□□□□ -0.32
USB1-212ENST00000566082 GGNBP2Q9H3C7 697 aa13.06□□□□□ -0.32
USB1-212ENST00000566082 PLB1Q6P1J6 1458 aa13.06□□□□□ -0.32
USB1-212ENST00000566082 ST18O60284 1047 aa13.06□□□□□ -0.32
USB1-212ENST00000566082 NASPP49321 788 aaPredicted RBP13.05□□□□□ -0.32
USB1-212ENST00000566082 MCTP1Q6DN14 999 aa13.05□□□□□ -0.32
USB1-212ENST00000566082 TCOF1Q13428 1488 aaKnown RBP13.05□□□□□ -0.32
USB1-212ENST00000566082 SPATA31E1Q6ZUB1 1445 aa13.05□□□□□ -0.32
USB1-212ENST00000566082 PER1O15534 1290 aaPredicted RBP13.05□□□□□ -0.32
USB1-212ENST00000566082 KIAA2012Q0VF49 1180 aa13.05□□□□□ -0.32
USB1-212ENST00000566082 SLC4A10Q6U841 1118 aa13.05□□□□□ -0.32
USB1-212ENST00000566082 RALGAPBQ86X10 1494 aa13.05□□□□□ -0.32
USB1-212ENST00000566082 ESPNB1AK53 854 aa13.05□□□□□ -0.32
USB1-212ENST00000566082 SEC24BO95487 1268 aa13.05□□□□□ -0.32
USB1-212ENST00000566082 MVPQ14764 893 aaKnown RBP13.05□□□□□ -0.32
USB1-212ENST00000566082 NKTRP30414 1462 aaKnown RBP13.04□□□□□ -0.32
USB1-212ENST00000566082 PLEKHH2Q8IVE3 1493 aa13.04□□□□□ -0.32
USB1-212ENST00000566082 RARSP54136 660 aaKnown RBP13.04□□□□□ -0.32
USB1-212ENST00000566082 ARHGEF11O15085 1522 aa13.04□□□□□ -0.32
USB1-212ENST00000566082 PLEKHH1Q9ULM0 1364 aa13.04□□□□□ -0.32
USB1-212ENST00000566082 C1orf115Q9H7X2 142 aa13.04□□□□□ -0.32
USB1-212ENST00000566082 EVC2Q86UK5 1308 aa13.04□□□□□ -0.32
USB1-212ENST00000566082 TRIM6-TRIM34B2RNG4 842 aa13.03□□□□□ -0.32
USB1-212ENST00000566082 KIF16BQ96L93 1317 aa13.03□□□□□ -0.32
USB1-212ENST00000566082 C14orf37Q86TY3 774 aa13.02□□□□□ -0.32
USB1-212ENST00000566082 NOB1Q9ULX3 412 aaKnown RBP13.02□□□□□ -0.32
USB1-212ENST00000566082 MINK1Q8N4C8 1332 aaPredicted RBP13.02□□□□□ -0.32
USB1-212ENST00000566082 PANK2Q9BZ23 570 aa13.02□□□□□ -0.33
USB1-212ENST00000566082 DIAPH1O60610 1272 aaKnown RBP13.02□□□□□ -0.33
USB1-212ENST00000566082 CHAF1AQ13111 956 aaPredicted RBP13.02□□□□□ -0.33
USB1-212ENST00000566082 CABP2Q9NPB3 220 aa13.02□□□□□ -0.33
USB1-212ENST00000566082 KCNJ4P48050 445 aa13.01□□□□□ -0.33
USB1-212ENST00000566082 OS9Q13438 667 aaPredicted RBP13.01□□□□□ -0.33
USB1-212ENST00000566082 R3HCC1Q9Y3T6 440 aaKnown RBP13.01□□□□□ -0.33
USB1-212ENST00000566082 CAVIN1Q6NZI2 390 aaKnown RBP13.01□□□□□ -0.33
USB1-212ENST00000566082 SYAP1Q96A49 352 aaPredicted RBP13.01□□□□□ -0.33
USB1-212ENST00000566082 STAC3Q96MF2 364 aa13.01□□□□□ -0.33
USB1-212ENST00000566082 TESK2Q96S53 571 aa13.01□□□□□ -0.33
USB1-212ENST00000566082 SPINK5Q9NQ38 1064 aaPredicted RBP13.01□□□□□ -0.33
USB1-212ENST00000566082 PCDHB15Q9Y5E8 787 aa13.01□□□□□ -0.33
USB1-212ENST00000566082 ARHGAP5Q13017 1502 aa13.01□□□□□ -0.33
USB1-212ENST00000566082 KIAA0586Q9BVV6 1533 aa13.01□□□□□ -0.33
USB1-212ENST00000566082 NINLQ9Y2I6 1382 aa13□□□□□ -0.33
USB1-212ENST00000566082 HAP1P54257 671 aaPredicted RBP13□□□□□ -0.33
USB1-212ENST00000566082 ABCA5Q8WWZ7 1642 aa13□□□□□ -0.33
USB1-212ENST00000566082 PZPP20742 1482 aa13□□□□□ -0.33
USB1-212ENST00000566082 HMOX1P09601 288 aa13□□□□□ -0.33
USB1-212ENST00000566082 ATF7IPQ6VMQ6 1270 aa13□□□□□ -0.33
USB1-212ENST00000566082 WDR63Q8IWG1 891 aa13□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 46.9 ms