RNA–Protein interactions for RNA: ENST00000565154.5

PKM-215, Transcript of pyruvate kinase M1/2, human

APPRIS ALT1 TSL 2 BASIC

Gene PKM, Length 2,004 nt, Biotype protein coding, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PKM-215	ENST00000565154	POLR3GL	Q9BT43	218 aa		28.18	■■■□□ 2.1
PKM-215	ENST00000565154	GTF3C3	Q9Y5Q9	886 aa		28.15	■■■□□ 2.1
PKM-215	ENST00000565154	SCAF11	Q99590	1463 aa	Known RBP	28.15	■■■□□ 2.1
PKM-215	ENST00000565154	TESK2	Q96S53	571 aa		28.13	■■■□□ 2.09
PKM-215	ENST00000565154	DISP3	Q9P2K9	1392 aa		28.08	■■■□□ 2.09
PKM-215	ENST00000565154	SETBP1	Q9Y6X0	1596 aa		28.08	■■■□□ 2.09
PKM-215	ENST00000565154	ADGRF5	Q8IZF2	1346 aa		28.08	■■■□□ 2.09
PKM-215	ENST00000565154	CLTC	Q00610	1675 aa	Known RBP	28.07	■■■□□ 2.08
PKM-215	ENST00000565154	EIF3A	Q14152	1382 aa	Known RBP	28.05	■■■□□ 2.08
PKM-215	ENST00000565154	MYO5B	Q9ULV0	1848 aa		28.05	■■■□□ 2.08
PKM-215	ENST00000565154	RPGRIP1L	Q68CZ1	1315 aa		28.05	■■■□□ 2.08
PKM-215	ENST00000565154	PIK3C2G	O75747	1445 aa		28.04	■■■□□ 2.08
PKM-215	ENST00000565154	CHGA	P10645	457 aa	Known RBP	28.04	■■■□□ 2.08
PKM-215	ENST00000565154	NEXMIF	Q5QGS0	1516 aa		28.04	■■■□□ 2.08
PKM-215	ENST00000565154	MYO3A	Q8NEV4	1616 aa		28.04	■■■□□ 2.08
PKM-215	ENST00000565154	TMF1	P82094	1093 aa		28.03	■■■□□ 2.08
PKM-215	ENST00000565154	PPP6R1	Q9UPN7	881 aa		28.02	■■■□□ 2.08
PKM-215	ENST00000565154	TMEM131L	A2VDJ0	1609 aa		28	■■■□□ 2.07
PKM-215	ENST00000565154	CFAP70	Q5T0N1	1121 aa		27.99	■■■□□ 2.07
PKM-215	ENST00000565154	ERVK-7	P63135	1459 aa		27.99	■■■□□ 2.07
PKM-215	ENST00000565154	SLC52A1	Q9NWF4	448 aa		27.98	■■■□□ 2.07
PKM-215	ENST00000565154	CCDC184	Q52MB2	194 aa		27.97	■■■□□ 2.07
PKM-215	ENST00000565154	KTN1	Q86UP2	1357 aa	Known RBP	27.96	■■■□□ 2.07
PKM-215	ENST00000565154	KDM5A	P29375	1690 aa	Known RBP	27.96	■■■□□ 2.07
PKM-215	ENST00000565154	ADGRB1	O14514	1584 aa		27.95	■■■□□ 2.07
PKM-215	ENST00000565154	MRS2	Q9HD23	443 aa		27.95	■■■□□ 2.06
PKM-215	ENST00000565154	MYOM1	P52179	1685 aa		27.93	■■■□□ 2.06
PKM-215	ENST00000565154	IDI1	Q13907	227 aa		27.93	■■■□□ 2.06
PKM-215	ENST00000565154	SPATA31D1	Q6ZQQ2	1576 aa		27.93	■■■□□ 2.06
PKM-215	ENST00000565154	ZFYVE9	O95405	1425 aa		27.9	■■■□□ 2.06
PKM-215	ENST00000565154	C14orf93	Q9H972	538 aa	Known RBP	27.89	■■■□□ 2.06
PKM-215	ENST00000565154	CDCA8	Q53HL2	280 aa		27.88	■■■□□ 2.05
PKM-215	ENST00000565154	QRICH2	Q9H0J4	1663 aa		27.87	■■■□□ 2.05
PKM-215	ENST00000565154	SBNO2	Q9Y2G9	1366 aa		27.87	■■■□□ 2.05
PKM-215	ENST00000565154	VGF	O15240	615 aa	Predicted RBP	27.86	■■■□□ 2.05
PKM-215	ENST00000565154	PER1	O15534	1290 aa	Predicted RBP	27.85	■■■□□ 2.05
PKM-215	ENST00000565154	SLC24A1	O60721	1099 aa		27.85	■■■□□ 2.05
PKM-215	ENST00000565154	RALBP1	Q15311	655 aa		27.85	■■■□□ 2.05
PKM-215	ENST00000565154	FBXO31	Q5XUX0	539 aa	Predicted RBP	27.84	■■■□□ 2.05
PKM-215	ENST00000565154	ARHGEF28	Q8N1W1	1705 aa	Known RBP	27.84	■■■□□ 2.05
PKM-215	ENST00000565154	PARD3	Q8TEW0	1356 aa		27.83	■■■□□ 2.05
PKM-215	ENST00000565154	HNRNPU	Q00839	825 aa	Known RBP eCLIP	27.83	■■■□□ 2.05
PKM-215	ENST00000565154	CNGB1	Q14028	1251 aa	Predicted RBP	27.82	■■■□□ 2.04
PKM-215	ENST00000565154	MYBBP1A	Q9BQG0	1328 aa	Known RBP	27.81	■■■□□ 2.04
PKM-215	ENST00000565154	PANK3	Q9H999	370 aa		27.8	■■■□□ 2.04
PKM-215	ENST00000565154	MLEC	Q14165	292 aa		27.79	■■■□□ 2.04
PKM-215	ENST00000565154	FAM9B	Q8IZU0	186 aa		27.79	■■■□□ 2.04
PKM-215	ENST00000565154	BRD4	O60885	1362 aa	Predicted RBP	27.78	■■■□□ 2.04
PKM-215	ENST00000565154	CENPJ	Q9HC77	1338 aa	Predicted RBP	27.77	■■■□□ 2.04
PKM-215	ENST00000565154	ASXL1	Q8IXJ9	1541 aa		27.76	■■■□□ 2.03
PKM-215	ENST00000565154	NUTM2D	Q5VT03	806 aa	Predicted RBP	27.75	■■■□□ 2.03
PKM-215	ENST00000565154	A2ML1	A8K2U0	1454 aa		27.74	■■■□□ 2.03
PKM-215	ENST00000565154	TRAK1	Q9UPV9	953 aa		27.72	■■■□□ 2.03
PKM-215	ENST00000565154	TMEM132E	Q6IEE7	984 aa		27.72	■■■□□ 2.03
PKM-215	ENST00000565154	ESF1	Q9H501	851 aa	Known RBP	27.71	■■■□□ 2.03
PKM-215	ENST00000565154	ZMYM3	Q14202	1370 aa		27.71	■■■□□ 2.03
PKM-215	ENST00000565154	TMC1	Q8TDI8	760 aa		27.7	■■■□□ 2.02
PKM-215	ENST00000565154	NLRP13	Q86W25	1043 aa		27.68	■■■□□ 2.02
PKM-215	ENST00000565154	ALK	Q9UM73	1620 aa		27.67	■■■□□ 2.02
PKM-215	ENST00000565154	STAG3	Q9UJ98	1225 aa		27.67	■■■□□ 2.02
PKM-215	ENST00000565154	PNISR	Q8TF01	805 aa	Known RBP	27.67	■■■□□ 2.02
PKM-215	ENST00000565154	ZBED9	Q6R2W3	1325 aa		27.66	■■■□□ 2.02
PKM-215	ENST00000565154	SETD1A	O15047	1707 aa	Known RBP	27.65	■■■□□ 2.02
PKM-215	ENST00000565154	CC2D1B	Q5T0F9	858 aa	Known RBP	27.65	■■■□□ 2.02
PKM-215	ENST00000565154	LRPPRC	P42704	1394 aa	Known RBP	27.64	■■■□□ 2.02
PKM-215	ENST00000565154	KNSTRN	Q9Y448	316 aa		27.63	■■■□□ 2.01
PKM-215	ENST00000565154	NPC1L1	Q9UHC9	1359 aa		27.62	■■■□□ 2.01
PKM-215	ENST00000565154	RIMS2	Q9UQ26	1411 aa		27.62	■■■□□ 2.01
PKM-215	ENST00000565154	TULP4	Q9NRJ4	1543 aa		27.62	■■■□□ 2.01
PKM-215	ENST00000565154	UBR1	Q8IWV7	1749 aa		27.61	■■■□□ 2.01
PKM-215	ENST00000565154	AMER1	Q5JTC6	1135 aa	Predicted RBP	27.6	■■■□□ 2.01
PKM-215	ENST00000565154	PTPRM	P28827	1452 aa		27.6	■■■□□ 2.01
PKM-215	ENST00000565154	TNR	Q92752	1358 aa		27.59	■■■□□ 2.01
PKM-215	ENST00000565154	FER1L4	A9Z1Z3	1794 aa		27.58	■■■□□ 2.01
PKM-215	ENST00000565154	YTHDC2	Q9H6S0	1430 aa	Known RBP	27.58	■■■□□ 2.01
PKM-215	ENST00000565154	NRXN3	Q9Y4C0	1643 aa		27.58	■■■□□ 2.01
PKM-215	ENST00000565154	C3	P01024	1663 aa		27.55	■■■□□ 2
PKM-215	ENST00000565154	SUPT16H	Q9Y5B9	1047 aa	Known RBP	27.55	■■■□□ 2
PKM-215	ENST00000565154	TRH	P20396	242 aa	Predicted RBP	27.55	■■■□□ 2
PKM-215	ENST00000565154	USP32	Q8NFA0	1604 aa		27.54	■■■□□ 2
PKM-215	ENST00000565154	PUS7	Q96PZ0	661 aa	Known RBP	27.53	■■■□□ 2
PKM-215	ENST00000565154	EVC2	Q86UK5	1308 aa		27.52	■■■□□ 2
PKM-215	ENST00000565154	DLC1	Q96QB1	1528 aa		27.52	■■■□□ 2
PKM-215	ENST00000565154	NLRP1	Q9C000	1473 aa		27.48	■■□□□ 1.99
PKM-215	ENST00000565154	ABCF1	Q8NE71	845 aa	Known RBP eCLIP	27.48	■■□□□ 1.99
PKM-215	ENST00000565154	SENP3	Q9H4L4	574 aa	Predicted RBP	27.48	■■□□□ 1.99
PKM-215	ENST00000565154	STK26	Q9P289	416 aa		27.48	■■□□□ 1.99
PKM-215	ENST00000565154	INSR	P06213	1382 aa		27.48	■■□□□ 1.99
PKM-215	ENST00000565154	CARD14	Q9BXL6	1004 aa		27.46	■■□□□ 1.99
PKM-215	ENST00000565154	KNDC1	Q76NI1	1749 aa		27.46	■■□□□ 1.99
PKM-215	ENST00000565154	PPP2R1A	P30153	589 aa		27.45	■■□□□ 1.99
PKM-215	ENST00000565154	NSD3	Q9BZ95	1437 aa		27.44	■■□□□ 1.98
PKM-215	ENST00000565154	NEFL	P07196	543 aa		27.43	■■□□□ 1.98
PKM-215	ENST00000565154	BLM	P54132	1417 aa	Predicted RBP	27.42	■■□□□ 1.98
PKM-215	ENST00000565154	TMEM2	Q9UHN6	1383 aa		27.42	■■□□□ 1.98
PKM-215	ENST00000565154	PRAM1	Q96QH2	718 aa		27.42	■■□□□ 1.98
PKM-215	ENST00000565154	NINL	Q9Y2I6	1382 aa		27.42	■■□□□ 1.98
PKM-215	ENST00000565154	SAFB2	Q14151	953 aa	Known RBP eCLIP	27.41	■■□□□ 1.98
PKM-215	ENST00000565154	SLC12A5	Q9H2X9	1139 aa		27.41	■■□□□ 1.98
PKM-215	ENST00000565154	HDGF	P51858	240 aa	Known RBP	27.4	■■□□□ 1.98

Retrieved 100 of 20,778 RNA–protein pairs in 9.5 ms