RNA–Protein interactions for RNA: ENST00000564387.5

USB1-209, Transcript of U6 snRNA biogenesis phosphodiesterase 1, humanhuman

TSL 4

Gene USB1, Length 558 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USB1-209ENST00000564387 ZNF335Q9H4Z2 1342 aaPredicted RBP25.64■■□□□ 1.7
USB1-209ENST00000564387 ABCF1Q8NE71 845 aaKnown RBP eCLIP25.64■■□□□ 1.7
USB1-209ENST00000564387 KIF1BO60333 1816 aa25.63■■□□□ 1.69
USB1-209ENST00000564387 PLEKHG1Q9ULL1 1385 aa25.62■■□□□ 1.69
USB1-209ENST00000564387 TRIM26Q12899 539 aaPredicted RBP25.62■■□□□ 1.69
USB1-209ENST00000564387 CERKQ8TCT0 537 aa25.62■■□□□ 1.69
USB1-209ENST00000564387 CCDC144AA2RUR9 1427 aa25.59■■□□□ 1.69
USB1-209ENST00000564387 NEXMIFQ5QGS0 1516 aa25.57■■□□□ 1.68
USB1-209ENST00000564387 ANKRD30BQ9BXX2 1392 aa25.56■■□□□ 1.68
USB1-209ENST00000564387 SPATA31E1Q6ZUB1 1445 aa25.56■■□□□ 1.68
USB1-209ENST00000564387 IQSEC2Q5JU85 1478 aa25.56■■□□□ 1.68
USB1-209ENST00000564387 CPS1P31327 1500 aa25.55■■□□□ 1.68
USB1-209ENST00000564387 RPGRIP1LQ68CZ1 1315 aa25.55■■□□□ 1.68
USB1-209ENST00000564387 PPP1R15AO75807 674 aaPredicted RBP25.53■■□□□ 1.68
USB1-209ENST00000564387 STRCP1A6NGW2 1772 aa25.53■■□□□ 1.68
USB1-209ENST00000564387 ADAMTS13Q76LX8 1427 aa25.53■■□□□ 1.68
USB1-209ENST00000564387 ZNF326Q5BKZ1 582 aaKnown RBP25.52■■□□□ 1.68
USB1-209ENST00000564387 TBX22Q9Y458 520 aa25.52■■□□□ 1.68
USB1-209ENST00000564387 SLC26A8Q96RN1 970 aa25.51■■□□□ 1.67
USB1-209ENST00000564387 NUTM2DQ5VT03 806 aaPredicted RBP25.5■■□□□ 1.67
USB1-209ENST00000564387 SETBP1Q9Y6X0 1596 aa25.5■■□□□ 1.67
USB1-209ENST00000564387 DIP2AQ14689 1571 aa25.49■■□□□ 1.67
USB1-209ENST00000564387 NRXN3Q9Y4C0 1643 aa25.48■■□□□ 1.67
USB1-209ENST00000564387 PPLO60437 1756 aa25.47■■□□□ 1.67
USB1-209ENST00000564387 VGFO15240 615 aaPredicted RBP25.46■■□□□ 1.67
USB1-209ENST00000564387 FBXO41Q8TF61 875 aa25.46■■□□□ 1.67
USB1-209ENST00000564387 NWD1Q149M9 1564 aa25.45■■□□□ 1.66
USB1-209ENST00000564387 KCNA6P17658 529 aa25.45■■□□□ 1.66
USB1-209ENST00000564387 PIK3R4Q99570 1358 aa25.44■■□□□ 1.66
USB1-209ENST00000564387 IFT172Q9UG01 1749 aa25.43■■□□□ 1.66
USB1-209ENST00000564387 LRRC7Q96NW7 1537 aa25.43■■□□□ 1.66
USB1-209ENST00000564387 BCANQ96GW7 911 aa25.43■■□□□ 1.66
USB1-209ENST00000564387 CHD2O14647 1828 aaKnown RBP25.42■■□□□ 1.66
USB1-209ENST00000564387 RGL3Q3MIN7 710 aa25.39■■□□□ 1.66
USB1-209ENST00000564387 NKTRP30414 1462 aaKnown RBP25.39■■□□□ 1.65
USB1-209ENST00000564387 ILDR1Q86SU0 546 aaPredicted RBP25.37■■□□□ 1.65
USB1-209ENST00000564387 SENP3Q9H4L4 574 aaPredicted RBP25.37■■□□□ 1.65
USB1-209ENST00000564387 SETD1AO15047 1707 aaKnown RBP25.35■■□□□ 1.65
USB1-209ENST00000564387 ADGRF5Q8IZF2 1346 aa25.35■■□□□ 1.65
USB1-209ENST00000564387 METP08581 1390 aa25.34■■□□□ 1.65
USB1-209ENST00000564387 PTPRUQ92729 1446 aa25.34■■□□□ 1.65
USB1-209ENST00000564387 NRXN1Q9ULB1 1477 aa25.34■■□□□ 1.65
USB1-209ENST00000564387 XIRP1Q702N8 1843 aaKnown RBP25.33■■□□□ 1.65
USB1-209ENST00000564387 ALKQ9UM73 1620 aa25.33■■□□□ 1.65
USB1-209ENST00000564387 MYOM2P54296 1465 aa25.33■■□□□ 1.65
USB1-209ENST00000564387 DHX57Q6P158 1386 aaKnown RBP25.32■■□□□ 1.64
USB1-209ENST00000564387 PIK3C2GO75747 1445 aa25.3■■□□□ 1.64
USB1-209ENST00000564387 XRN1Q8IZH2 1706 aaKnown RBP25.3■■□□□ 1.64
USB1-209ENST00000564387 STAC3Q96MF2 364 aa25.29■■□□□ 1.64
USB1-209ENST00000564387 TMEM94Q12767 1356 aa25.29■■□□□ 1.64
USB1-209ENST00000564387 NCOA3Q9Y6Q9 1424 aa25.29■■□□□ 1.64
USB1-209ENST00000564387 PROSER2Q86WR7 435 aaPredicted RBP25.28■■□□□ 1.64
USB1-209ENST00000564387 AMOTL2Q9Y2J4 779 aa25.28■■□□□ 1.64
USB1-209ENST00000564387 PRAG1Q86YV5 1406 aa25.28■■□□□ 1.64
USB1-209ENST00000564387 UBAP1LF5GYI3 381 aa25.23■■□□□ 1.63
USB1-209ENST00000564387 C14orf93Q9H972 538 aaKnown RBP25.22■■□□□ 1.63
USB1-209ENST00000564387 TOM1O60784 492 aa25.21■■□□□ 1.63
USB1-209ENST00000564387 DCAF11Q8TEB1 546 aa25.19■■□□□ 1.62
USB1-209ENST00000564387 ASXL1Q8IXJ9 1541 aa25.18■■□□□ 1.62
USB1-209ENST00000564387 RBM33Q96EV2 1170 aaKnown RBP25.18■■□□□ 1.62
USB1-209ENST00000564387 LAMC1P11047 1609 aa25.18■■□□□ 1.62
USB1-209ENST00000564387 PTCH1Q13635 1447 aa25.18■■□□□ 1.62
USB1-209ENST00000564387 TECPR2O15040 1411 aa25.16■■□□□ 1.62
USB1-209ENST00000564387 SIN3AQ96ST3 1273 aa25.16■■□□□ 1.62
USB1-209ENST00000564387 PCGF6Q9BYE7 350 aa25.15■■□□□ 1.62
USB1-209ENST00000564387 CFAP70Q5T0N1 1121 aa25.14■■□□□ 1.62
USB1-209ENST00000564387 LRPPRCP42704 1394 aaKnown RBP25.14■■□□□ 1.61
USB1-209ENST00000564387 MSH6P52701 1360 aa25.14■■□□□ 1.61
USB1-209ENST00000564387 ABCC11Q96J66 1382 aa25.14■■□□□ 1.61
USB1-209ENST00000564387 ROBO2Q9HCK4 1378 aa25.13■■□□□ 1.61
USB1-209ENST00000564387 C19orf44Q9H6X5 657 aa25.12■■□□□ 1.61
USB1-209ENST00000564387 KDM2AQ9Y2K7 1162 aa25.12■■□□□ 1.61
USB1-209ENST00000564387 ADGRB1O14514 1584 aa25.1■■□□□ 1.61
USB1-209ENST00000564387 KNDC1Q76NI1 1749 aa25.1■■□□□ 1.61
USB1-209ENST00000564387 TMEM132EQ6IEE7 984 aa25.1■■□□□ 1.61
USB1-209ENST00000564387 DCCP43146 1447 aa25.1■■□□□ 1.61
USB1-209ENST00000564387 YTHDC2Q9H6S0 1430 aaKnown RBP25.1■■□□□ 1.61
USB1-209ENST00000564387 SIPA1L2Q9P2F8 1722 aaPredicted RBP25.09■■□□□ 1.61
USB1-209ENST00000564387 SIRT1Q96EB6 747 aa25.09■■□□□ 1.61
USB1-209ENST00000564387 L3MBTL2Q969R5 705 aa25.08■■□□□ 1.61
USB1-209ENST00000564387 ADGRL3Q9HAR2 1447 aa25.07■■□□□ 1.6
USB1-209ENST00000564387 FAM135BQ49AJ0 1406 aa25.06■■□□□ 1.6
USB1-209ENST00000564387 KIAA1210Q9ULL0 1709 aa25.04■■□□□ 1.6
USB1-209ENST00000564387 PIP4K2BP78356 416 aa25.04■■□□□ 1.6
USB1-209ENST00000564387 NEUROD1Q13562 356 aa25.04■■□□□ 1.6
USB1-209ENST00000564387 CADPS2Q86UW7 1296 aa25.04■■□□□ 1.6
USB1-209ENST00000564387 NALCNQ8IZF0 1738 aa25.03■■□□□ 1.6
USB1-209ENST00000564387 SLAIN2Q9P270 581 aa25.03■■□□□ 1.6
USB1-209ENST00000564387 C14orf37Q86TY3 774 aa25.02■■□□□ 1.6
USB1-209ENST00000564387 STK26Q9P289 416 aa25.02■■□□□ 1.6
USB1-209ENST00000564387 DLC1Q96QB1 1528 aa25.02■■□□□ 1.6
USB1-209ENST00000564387 ATF3P18847 181 aa25■■□□□ 1.59
USB1-209ENST00000564387 CLSPNQ9HAW4 1339 aa24.98■■□□□ 1.59
USB1-209ENST00000564387 PLEKHH1Q9ULM0 1364 aa24.97■■□□□ 1.59
USB1-209ENST00000564387 SCAF1Q9H7N4 1312 aaKnown RBP24.97■■□□□ 1.59
USB1-209ENST00000564387 WAPLQ7Z5K2 1190 aa24.97■■□□□ 1.59
USB1-209ENST00000564387 MST1RQ04912 1400 aa24.96■■□□□ 1.59
USB1-209ENST00000564387 ROBO1Q9Y6N7 1651 aa24.96■■□□□ 1.59
USB1-209ENST00000564387 HSPA1LP34931 641 aa24.95■■□□□ 1.58
USB1-209ENST00000564387 CDC42BPGQ6DT37 1551 aa24.93■■□□□ 1.58
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms