RNA–Protein interactions for RNA: ENST00000562680.5

TCF4-216, Transcript of transcription factor 4, humanhuman

TSL 1 (best)

Gene TCF4, Length 5,733 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCF4-216ENST00000562680 FTSJ3Q8IY81 847 aaKnown RBP9.74□□□□□ -0.85
TCF4-216ENST00000562680 ANKLE2Q86XL3 938 aa9.74□□□□□ -0.85
TCF4-216ENST00000562680 ARAP3Q8WWN8 1544 aa9.74□□□□□ -0.85
TCF4-216ENST00000562680 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP9.73□□□□□ -0.85
TCF4-216ENST00000562680 BRD4O60885 1362 aaPredicted RBP9.73□□□□□ -0.85
TCF4-216ENST00000562680 NBPF1Q3BBV0 1214 aa9.73□□□□□ -0.85
TCF4-216ENST00000562680 PPP4R2Q9NY27 417 aa9.73□□□□□ -0.85
TCF4-216ENST00000562680 SUPT16HQ9Y5B9 1047 aaKnown RBP9.73□□□□□ -0.85
TCF4-216ENST00000562680 PLEKHG5O94827 1062 aa9.73□□□□□ -0.85
TCF4-216ENST00000562680 TMEM132EQ6IEE7 984 aa9.72□□□□□ -0.85
TCF4-216ENST00000562680 ZBTB4Q9P1Z0 1013 aaPredicted RBP9.72□□□□□ -0.85
TCF4-216ENST00000562680 ARHGEF12Q9NZN5 1544 aa9.72□□□□□ -0.85
TCF4-216ENST00000562680 DEKP35659 375 aaKnown RBP9.72□□□□□ -0.85
TCF4-216ENST00000562680 AMPHP49418 695 aa9.72□□□□□ -0.85
TCF4-216ENST00000562680 ADGBQ8N7X0 1667 aa9.72□□□□□ -0.85
TCF4-216ENST00000562680 GOLGA2Q08379 1002 aa9.71□□□□□ -0.85
TCF4-216ENST00000562680 IPO8O15397 1037 aaKnown RBP9.71□□□□□ -0.86
TCF4-216ENST00000562680 CLASP1Q7Z460 1538 aa9.71□□□□□ -0.86
TCF4-216ENST00000562680 A0A0U1RQG5 324 aaPredicted RBP9.71□□□□□ -0.86
TCF4-216ENST00000562680 NCLP19338 710 aaKnown RBP9.71□□□□□ -0.86
TCF4-216ENST00000562680 ATP10AO60312 1499 aa9.71□□□□□ -0.86
TCF4-216ENST00000562680 GCC2Q8IWJ2 1684 aa9.71□□□□□ -0.86
TCF4-216ENST00000562680 SOX12O15370 315 aa9.7□□□□□ -0.86
TCF4-216ENST00000562680 IDI1Q13907 227 aa9.7□□□□□ -0.86
TCF4-216ENST00000562680 SUGP2Q8IX01 1082 aaKnown RBP eCLIP9.7□□□□□ -0.86
TCF4-216ENST00000562680 ZNF692Q9BU19 519 aaPredicted RBP9.7□□□□□ -0.86
TCF4-216ENST00000562680 LAS1LQ9Y4W2 734 aaKnown RBP9.7□□□□□ -0.86
TCF4-216ENST00000562680 SCAF11Q99590 1463 aaKnown RBP9.7□□□□□ -0.86
TCF4-216ENST00000562680 TNRQ92752 1358 aa9.7□□□□□ -0.86
TCF4-216ENST00000562680 NCBP3Q53F19 620 aaKnown RBP9.7□□□□□ -0.86
TCF4-216ENST00000562680 ZBED9Q6R2W3 1325 aa9.7□□□□□ -0.86
TCF4-216ENST00000562680 MBD5Q9P267 1494 aa9.7□□□□□ -0.86
TCF4-216ENST00000562680 PRAM1Q96QH2 718 aa9.7□□□□□ -0.86
TCF4-216ENST00000562680 PREX2Q70Z35 1606 aa9.69□□□□□ -0.86
TCF4-216ENST00000562680 ADCY10Q96PN6 1610 aa9.69□□□□□ -0.86
TCF4-216ENST00000562680 ZCCHC11Q5TAX3 1644 aaKnown RBP9.69□□□□□ -0.86
TCF4-216ENST00000562680 RALGAPBQ86X10 1494 aa9.69□□□□□ -0.86
TCF4-216ENST00000562680 EIF2AK4Q9P2K8 1649 aaKnown RBP9.69□□□□□ -0.86
TCF4-216ENST00000562680 MAGI2Q86UL8 1455 aa9.69□□□□□ -0.86
TCF4-216ENST00000562680 ATF3P18847 181 aa9.68□□□□□ -0.86
TCF4-216ENST00000562680 PZPP20742 1482 aa9.68□□□□□ -0.86
TCF4-216ENST00000562680 CSB-PGBD3P0DP91 1061 aa9.68□□□□□ -0.86
TCF4-216ENST00000562680 ARXQ96QS3 562 aa9.68□□□□□ -0.86
TCF4-216ENST00000562680 C14orf93Q9H972 538 aaKnown RBP9.68□□□□□ -0.86
TCF4-216ENST00000562680 MAST1Q9Y2H9 1570 aa9.68□□□□□ -0.86
TCF4-216ENST00000562680 RCAN3Q9UKA8 241 aa9.68□□□□□ -0.86
TCF4-216ENST00000562680 DIAPH1O60610 1272 aaKnown RBP9.67□□□□□ -0.86
TCF4-216ENST00000562680 ABCC1P33527 1531 aa9.67□□□□□ -0.86
TCF4-216ENST00000562680 GPRASP1Q5JY77 1395 aa9.67□□□□□ -0.86
TCF4-216ENST00000562680 NINLQ9Y2I6 1382 aa9.67□□□□□ -0.86
TCF4-216ENST00000562680 NOS1P29475 1434 aa9.67□□□□□ -0.86
TCF4-216ENST00000562680 MLH3Q9UHC1 1453 aa9.66□□□□□ -0.86
TCF4-216ENST00000562680 CABP2Q9NPB3 220 aa9.66□□□□□ -0.86
TCF4-216ENST00000562680 VSIG10Q8N0Z9 540 aa9.66□□□□□ -0.86
TCF4-216ENST00000562680 RTN4Q9NQC3 1192 aaKnown RBP9.66□□□□□ -0.86
TCF4-216ENST00000562680 PSME1Q06323 249 aa9.66□□□□□ -0.86
TCF4-216ENST00000562680 NUTM2FA1L443 756 aa9.66□□□□□ -0.86
TCF4-216ENST00000562680 IRX6P78412 446 aaPredicted RBP9.66□□□□□ -0.86
TCF4-216ENST00000562680 HOMEZQ8IX15 550 aa9.66□□□□□ -0.86
TCF4-216ENST00000562680 A0A0G2JS52 829 aa9.65□□□□□ -0.86
TCF4-216ENST00000562680 E9PSI1 815 aa9.65□□□□□ -0.86
TCF4-216ENST00000562680 FRAT1Q92837 279 aaPredicted RBP9.65□□□□□ -0.86
TCF4-216ENST00000562680 SAMD9LQ8IVG5 1584 aa9.65□□□□□ -0.86
TCF4-216ENST00000562680 PROSER2Q86WR7 435 aaPredicted RBP9.65□□□□□ -0.87
TCF4-216ENST00000562680 HDAC5Q9UQL6 1122 aa9.65□□□□□ -0.87
TCF4-216ENST00000562680 PDIA4P13667 645 aaKnown RBP9.65□□□□□ -0.87
TCF4-216ENST00000562680 ZFYVE16Q7Z3T8 1539 aa9.65□□□□□ -0.87
TCF4-216ENST00000562680 PRAG1Q86YV5 1406 aa9.64□□□□□ -0.87
TCF4-216ENST00000562680 ADGRF5Q8IZF2 1346 aa9.64□□□□□ -0.87
TCF4-216ENST00000562680 CDK19Q9BWU1 502 aa9.64□□□□□ -0.87
TCF4-216ENST00000562680 PUS7Q96PZ0 661 aaKnown RBP9.64□□□□□ -0.87
TCF4-216ENST00000562680 TTC37Q6PGP7 1564 aa9.64□□□□□ -0.87
TCF4-216ENST00000562680 FBXO31Q5XUX0 539 aaPredicted RBP9.64□□□□□ -0.87
TCF4-216ENST00000562680 SHROOM2Q13796 1616 aa9.63□□□□□ -0.87
TCF4-216ENST00000562680 RUNDC1Q96C34 613 aa9.63□□□□□ -0.87
TCF4-216ENST00000562680 CCDC61Q9Y6R9 512 aa9.63□□□□□ -0.87
TCF4-216ENST00000562680 ERCC6L2Q5T890 1561 aa9.63□□□□□ -0.87
TCF4-216ENST00000562680 UHRF1BP1Q6BDS2 1440 aa9.62□□□□□ -0.87
TCF4-216ENST00000562680 CFAP44Q96MT7 982 aa9.62□□□□□ -0.87
TCF4-216ENST00000562680 STK31Q9BXU1 1019 aa9.62□□□□□ -0.87
TCF4-216ENST00000562680 NSD2O96028 1365 aa9.62□□□□□ -0.87
TCF4-216ENST00000562680 PPP2R1AP30153 589 aa9.61□□□□□ -0.87
TCF4-216ENST00000562680 NBR1Q14596 966 aa9.61□□□□□ -0.87
TCF4-216ENST00000562680 KDM5DQ9BY66 1539 aa9.61□□□□□ -0.87
TCF4-216ENST00000562680 SLC26A8Q96RN1 970 aa9.61□□□□□ -0.87
TCF4-216ENST00000562680 SLC12A5Q9H2X9 1139 aa9.61□□□□□ -0.87
TCF4-216ENST00000562680 GGNBP2Q9H3C7 697 aa9.6□□□□□ -0.87
TCF4-216ENST00000562680 RIMS2Q9UQ26 1411 aa9.6□□□□□ -0.87
TCF4-216ENST00000562680 CCDC146Q8IYE0 955 aa9.6□□□□□ -0.87
TCF4-216ENST00000562680 SENP3-EIF4A1A0A087X0R7 540 aa9.6□□□□□ -0.87
TCF4-216ENST00000562680 PLXNC1O60486 1568 aa9.6□□□□□ -0.87
TCF4-216ENST00000562680 ZMYM3Q14202 1370 aa9.59□□□□□ -0.87
TCF4-216ENST00000562680 NLRP6P59044 892 aa9.59□□□□□ -0.87
TCF4-216ENST00000562680 CABP1Q9NZU7 370 aa9.59□□□□□ -0.87
TCF4-216ENST00000562680 CDK11BP21127 795 aaKnown RBP9.59□□□□□ -0.87
TCF4-216ENST00000562680 CASC1Q6TDU7 716 aa9.59□□□□□ -0.87
TCF4-216ENST00000562680 HECW2Q9P2P5 1572 aa9.58□□□□□ -0.88
TCF4-216ENST00000562680 APAF1O14727 1248 aa9.58□□□□□ -0.88
TCF4-216ENST00000562680 MTHFSP49914 203 aa9.58□□□□□ -0.88
TCF4-216ENST00000562680 NUDT16Q96DE0 195 aaKnown RBP9.58□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 50.4 ms