RNA–Protein interactions for RNA: ENST00000559397.5

TPM1-219, Transcript of tropomyosin 1, humanhuman

TSL 2 BASIC

Gene TPM1, Length 1,655 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-219ENST00000559397 TONSLQ96HA7 1378 aa23.79■■□□□ 1.4
TPM1-219ENST00000559397 RPGRIP1LQ68CZ1 1315 aa23.79■■□□□ 1.4
TPM1-219ENST00000559397 ZFYVE9O95405 1425 aa23.79■■□□□ 1.4
TPM1-219ENST00000559397 PPLO60437 1756 aa23.78■■□□□ 1.4
TPM1-219ENST00000559397 RIMS2Q9UQ26 1411 aa23.77■■□□□ 1.4
TPM1-219ENST00000559397 DCAF11Q8TEB1 546 aa23.74■■□□□ 1.39
TPM1-219ENST00000559397 LTKP29376 864 aa23.72■■□□□ 1.39
TPM1-219ENST00000559397 MYOM2P54296 1465 aa23.71■■□□□ 1.39
TPM1-219ENST00000559397 HSPA2P54652 639 aa23.71■■□□□ 1.39
TPM1-219ENST00000559397 NUTM2DQ5VT03 806 aaPredicted RBP23.71■■□□□ 1.39
TPM1-219ENST00000559397 ABCF1Q8NE71 845 aaKnown RBP eCLIP23.7■■□□□ 1.39
TPM1-219ENST00000559397 STAC3Q96MF2 364 aa23.7■■□□□ 1.39
TPM1-219ENST00000559397 HDGFP51858 240 aaKnown RBP23.7■■□□□ 1.38
TPM1-219ENST00000559397 TXNDC2Q86VQ3 553 aa23.7■■□□□ 1.38
TPM1-219ENST00000559397 KDM2AQ9Y2K7 1162 aa23.7■■□□□ 1.38
TPM1-219ENST00000559397 VGFO15240 615 aaPredicted RBP23.69■■□□□ 1.38
TPM1-219ENST00000559397 AEBP2Q6ZN18 517 aaPredicted RBP23.69■■□□□ 1.38
TPM1-219ENST00000559397 NRXN1Q9ULB1 1477 aa23.69■■□□□ 1.38
TPM1-219ENST00000559397 ADGRF5Q8IZF2 1346 aa23.68■■□□□ 1.38
TPM1-219ENST00000559397 SCAF11Q99590 1463 aaKnown RBP23.68■■□□□ 1.38
TPM1-219ENST00000559397 EID1Q9Y6B2 187 aa23.68■■□□□ 1.38
TPM1-219ENST00000559397 ANKLE2Q86XL3 938 aa23.67■■□□□ 1.38
TPM1-219ENST00000559397 POLR1AO95602 1720 aaPredicted RBP23.66■■□□□ 1.38
TPM1-219ENST00000559397 PPP1R15AO75807 674 aaPredicted RBP23.66■■□□□ 1.38
TPM1-219ENST00000559397 ZNF316A6NFI3 1004 aaPredicted RBP23.64■■□□□ 1.38
TPM1-219ENST00000559397 PRAG1Q86YV5 1406 aa23.64■■□□□ 1.37
TPM1-219ENST00000559397 PIK3C2GO75747 1445 aa23.63■■□□□ 1.37
TPM1-219ENST00000559397 PLEKHG1Q9ULL1 1385 aa23.63■■□□□ 1.37
TPM1-219ENST00000559397 NCKAP5LQ9HCH0 1330 aa23.63■■□□□ 1.37
TPM1-219ENST00000559397 STRCQ7RTU9 1775 aa23.62■■□□□ 1.37
TPM1-219ENST00000559397 MED14O60244 1454 aa23.61■■□□□ 1.37
TPM1-219ENST00000559397 NRXN3Q9Y4C0 1643 aa23.61■■□□□ 1.37
TPM1-219ENST00000559397 SETBP1Q9Y6X0 1596 aa23.61■■□□□ 1.37
TPM1-219ENST00000559397 NBPF8Q3BBV2 869 aa23.6■■□□□ 1.37
TPM1-219ENST00000559397 IQGAP1P46940 1657 aa23.58■■□□□ 1.37
TPM1-219ENST00000559397 NPHP4O75161 1426 aaPredicted RBP23.57■■□□□ 1.36
TPM1-219ENST00000559397 SENP3Q9H4L4 574 aaPredicted RBP23.57■■□□□ 1.36
TPM1-219ENST00000559397 ADAMTS13Q76LX8 1427 aa23.56■■□□□ 1.36
TPM1-219ENST00000559397 C14orf93Q9H972 538 aaKnown RBP23.55■■□□□ 1.36
TPM1-219ENST00000559397 ALKQ9UM73 1620 aa23.55■■□□□ 1.36
TPM1-219ENST00000559397 SETD1AO15047 1707 aaKnown RBP23.55■■□□□ 1.36
TPM1-219ENST00000559397 KIAA1210Q9ULL0 1709 aa23.55■■□□□ 1.36
TPM1-219ENST00000559397 TRPM1Q7Z4N2 1603 aa23.54■■□□□ 1.36
TPM1-219ENST00000559397 CFAP70Q5T0N1 1121 aa23.54■■□□□ 1.36
TPM1-219ENST00000559397 LAMC1P11047 1609 aa23.53■■□□□ 1.36
TPM1-219ENST00000559397 BCANQ96GW7 911 aa23.52■■□□□ 1.36
TPM1-219ENST00000559397 DIP2AQ14689 1571 aa23.51■■□□□ 1.35
TPM1-219ENST00000559397 RALGAPBQ86X10 1494 aa23.5■■□□□ 1.35
TPM1-219ENST00000559397 SLC26A8Q96RN1 970 aa23.5■■□□□ 1.35
TPM1-219ENST00000559397 TBX22Q9Y458 520 aa23.5■■□□□ 1.35
TPM1-219ENST00000559397 ASXL1Q8IXJ9 1541 aa23.48■■□□□ 1.35
TPM1-219ENST00000559397 NBPF1Q3BBV0 1214 aa23.48■■□□□ 1.35
TPM1-219ENST00000559397 ADGRB1O14514 1584 aa23.47■■□□□ 1.35
TPM1-219ENST00000559397 METP08581 1390 aa23.46■■□□□ 1.35
TPM1-219ENST00000559397 TMEM132EQ6IEE7 984 aa23.44■■□□□ 1.34
TPM1-219ENST00000559397 GPRASP1Q5JY77 1395 aa23.44■■□□□ 1.34
TPM1-219ENST00000559397 ROCK2O75116 1388 aaKnown RBP23.43■■□□□ 1.34
TPM1-219ENST00000559397 DMRT2Q9Y5R5 561 aa23.43■■□□□ 1.34
TPM1-219ENST00000559397 PIK3R4Q99570 1358 aa23.42■■□□□ 1.34
TPM1-219ENST00000559397 PTPRUQ92729 1446 aa23.4■■□□□ 1.34
TPM1-219ENST00000559397 CHD2O14647 1828 aaKnown RBP23.39■■□□□ 1.34
TPM1-219ENST00000559397 YTHDC2Q9H6S0 1430 aaKnown RBP23.39■■□□□ 1.33
TPM1-219ENST00000559397 DIEXFQ68CQ4 756 aaKnown RBP23.38■■□□□ 1.33
TPM1-219ENST00000559397 CARD11Q9BXL7 1154 aa23.38■■□□□ 1.33
TPM1-219ENST00000559397 LRPPRCP42704 1394 aaKnown RBP23.37■■□□□ 1.33
TPM1-219ENST00000559397 XRN1Q8IZH2 1706 aaKnown RBP23.35■■□□□ 1.33
TPM1-219ENST00000559397 KNDC1Q76NI1 1749 aa23.34■■□□□ 1.33
TPM1-219ENST00000559397 ABCC11Q96J66 1382 aa23.34■■□□□ 1.33
TPM1-219ENST00000559397 NWD1Q149M9 1564 aa23.34■■□□□ 1.33
TPM1-219ENST00000559397 AMOTL2Q9Y2J4 779 aa23.34■■□□□ 1.33
TPM1-219ENST00000559397 TECPR2O15040 1411 aa23.33■■□□□ 1.33
TPM1-219ENST00000559397 KCNA6P17658 529 aa23.33■■□□□ 1.33
TPM1-219ENST00000559397 STK26Q9P289 416 aa23.33■■□□□ 1.33
TPM1-219ENST00000559397 STRCP1A6NGW2 1772 aa23.32■■□□□ 1.32
TPM1-219ENST00000559397 TRAK1Q9UPV9 953 aa23.32■■□□□ 1.32
TPM1-219ENST00000559397 DLC1Q96QB1 1528 aa23.31■■□□□ 1.32
TPM1-219ENST00000559397 ARHGEF28Q8N1W1 1705 aaKnown RBP23.3■■□□□ 1.32
TPM1-219ENST00000559397 CPS1P31327 1500 aa23.3■■□□□ 1.32
TPM1-219ENST00000559397 PTCH1Q13635 1447 aa23.28■■□□□ 1.32
TPM1-219ENST00000559397 USP47Q96K76 1375 aa23.28■■□□□ 1.32
TPM1-219ENST00000559397 ZNF335Q9H4Z2 1342 aaPredicted RBP23.28■■□□□ 1.32
TPM1-219ENST00000559397 SIRT1Q96EB6 747 aa23.28■■□□□ 1.32
TPM1-219ENST00000559397 ROBO2Q9HCK4 1378 aa23.27■■□□□ 1.32
TPM1-219ENST00000559397 FAM135BQ49AJ0 1406 aa23.26■■□□□ 1.31
TPM1-219ENST00000559397 NKTRP30414 1462 aaKnown RBP23.25■■□□□ 1.31
TPM1-219ENST00000559397 EIF3AQ14152 1382 aaKnown RBP23.23■■□□□ 1.31
TPM1-219ENST00000559397 PLEKHH1Q9ULM0 1364 aa23.23■■□□□ 1.31
TPM1-219ENST00000559397 EIF4G2P78344 907 aaKnown RBP eCLIP23.22■■□□□ 1.31
TPM1-219ENST00000559397 WAPLQ7Z5K2 1190 aa23.22■■□□□ 1.31
TPM1-219ENST00000559397 PRAM1Q96QH2 718 aa23.22■■□□□ 1.31
TPM1-219ENST00000559397 ST20-MTHFSA0A0A6YYL1 179 aa23.2■■□□□ 1.3
TPM1-219ENST00000559397 HSPA5P11021 654 aaKnown RBP23.2■■□□□ 1.3
TPM1-219ENST00000559397 CENPJQ9HC77 1338 aaPredicted RBP23.2■■□□□ 1.3
TPM1-219ENST00000559397 LTBP4Q8N2S1 1624 aa23.2■■□□□ 1.3
TPM1-219ENST00000559397 POGKQ9P215 609 aa23.19■■□□□ 1.3
TPM1-219ENST00000559397 QRICH2Q9H0J4 1663 aa23.18■■□□□ 1.3
TPM1-219ENST00000559397 PROSER2Q86WR7 435 aaPredicted RBP23.17■■□□□ 1.3
TPM1-219ENST00000559397 SIPA1L2Q9P2F8 1722 aaPredicted RBP23.17■■□□□ 1.3
TPM1-219ENST00000559397 LRRC7Q96NW7 1537 aa23.17■■□□□ 1.3
TPM1-219ENST00000559397 SAFB2Q14151 953 aaKnown RBP eCLIP23.16■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms