RNA–Protein interactions for RNA: ENST00000558138.1

SPG11-207, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

APPRIS ALT2 TSL 5

Gene SPG11, Length 750 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-207ENST00000558138 TMEM131LA2VDJ0 1609 aa13.23□□□□□ -0.29
SPG11-207ENST00000558138 CLTCL1P53675 1640 aa13.23□□□□□ -0.29
SPG11-207ENST00000558138 ARHGAP23Q9P227 1491 aa13.23□□□□□ -0.29
SPG11-207ENST00000558138 KIF1BO60333 1816 aa13.23□□□□□ -0.29
SPG11-207ENST00000558138 MED14O60244 1454 aa13.22□□□□□ -0.29
SPG11-207ENST00000558138 CCDC144AA2RUR9 1427 aa13.22□□□□□ -0.29
SPG11-207ENST00000558138 CERKQ8TCT0 537 aa13.21□□□□□ -0.29
SPG11-207ENST00000558138 TRIM26Q12899 539 aaPredicted RBP13.2□□□□□ -0.3
SPG11-207ENST00000558138 SLC26A8Q96RN1 970 aa13.18□□□□□ -0.3
SPG11-207ENST00000558138 HRCP23327 699 aa13.17□□□□□ -0.3
SPG11-207ENST00000558138 ZFYVE9O95405 1425 aa13.16□□□□□ -0.3
SPG11-207ENST00000558138 RGL3Q3MIN7 710 aa13.16□□□□□ -0.3
SPG11-207ENST00000558138 PLEKHG1Q9ULL1 1385 aa13.16□□□□□ -0.3
SPG11-207ENST00000558138 CPS1P31327 1500 aa13.15□□□□□ -0.3
SPG11-207ENST00000558138 LTBP4Q8N2S1 1624 aa13.15□□□□□ -0.3
SPG11-207ENST00000558138 FBXO41Q8TF61 875 aa13.13□□□□□ -0.31
SPG11-207ENST00000558138 VGFO15240 615 aaPredicted RBP13.12□□□□□ -0.31
SPG11-207ENST00000558138 SCAF1Q9H7N4 1312 aaKnown RBP13.12□□□□□ -0.31
SPG11-207ENST00000558138 ILDR1Q86SU0 546 aaPredicted RBP13.11□□□□□ -0.31
SPG11-207ENST00000558138 NEXMIFQ5QGS0 1516 aa13.11□□□□□ -0.31
SPG11-207ENST00000558138 RPGRIP1LQ68CZ1 1315 aa13.11□□□□□ -0.31
SPG11-207ENST00000558138 UBAP1LF5GYI3 381 aa13.1□□□□□ -0.31
SPG11-207ENST00000558138 DIP2AQ14689 1571 aa13.1□□□□□ -0.31
SPG11-207ENST00000558138 KCNA6P17658 529 aa13.09□□□□□ -0.31
SPG11-207ENST00000558138 C14orf37Q86TY3 774 aa13.09□□□□□ -0.31
SPG11-207ENST00000558138 IQSEC2Q5JU85 1478 aa13.09□□□□□ -0.31
SPG11-207ENST00000558138 STRCP1A6NGW2 1772 aa13.08□□□□□ -0.32
SPG11-207ENST00000558138 PPLO60437 1756 aa13.08□□□□□ -0.32
SPG11-207ENST00000558138 PROSER2Q86WR7 435 aaPredicted RBP13.08□□□□□ -0.32
SPG11-207ENST00000558138 TBX22Q9Y458 520 aa13.08□□□□□ -0.32
SPG11-207ENST00000558138 ANKRD30BQ9BXX2 1392 aa13.07□□□□□ -0.32
SPG11-207ENST00000558138 ADAMTS13Q76LX8 1427 aa13.06□□□□□ -0.32
SPG11-207ENST00000558138 TOM1O60784 492 aa13.06□□□□□ -0.32
SPG11-207ENST00000558138 PIP4K2BP78356 416 aa13.06□□□□□ -0.32
SPG11-207ENST00000558138 LRRC7Q96NW7 1537 aa13.06□□□□□ -0.32
SPG11-207ENST00000558138 SETBP1Q9Y6X0 1596 aa13.06□□□□□ -0.32
SPG11-207ENST00000558138 SPATA31E1Q6ZUB1 1445 aa13.05□□□□□ -0.32
SPG11-207ENST00000558138 RBM33Q96EV2 1170 aaKnown RBP13.05□□□□□ -0.32
SPG11-207ENST00000558138 NKTRP30414 1462 aaKnown RBP13.04□□□□□ -0.32
SPG11-207ENST00000558138 NWD1Q149M9 1564 aa13.04□□□□□ -0.32
SPG11-207ENST00000558138 AMOTL2Q9Y2J4 779 aa13.04□□□□□ -0.32
SPG11-207ENST00000558138 KDM2AQ9Y2K7 1162 aa13.04□□□□□ -0.32
SPG11-207ENST00000558138 TMEM94Q12767 1356 aa13.04□□□□□ -0.32
SPG11-207ENST00000558138 CHD2O14647 1828 aaKnown RBP13.04□□□□□ -0.32
SPG11-207ENST00000558138 NRXN3Q9Y4C0 1643 aa13.03□□□□□ -0.32
SPG11-207ENST00000558138 PCGF6Q9BYE7 350 aa13.03□□□□□ -0.32
SPG11-207ENST00000558138 ADGRF5Q8IZF2 1346 aa13.03□□□□□ -0.32
SPG11-207ENST00000558138 PIK3R4Q99570 1358 aa13.03□□□□□ -0.32
SPG11-207ENST00000558138 DCAF11Q8TEB1 546 aa13.02□□□□□ -0.33
SPG11-207ENST00000558138 IFT172Q9UG01 1749 aa13.02□□□□□ -0.33
SPG11-207ENST00000558138 NEUROD1Q13562 356 aa13.01□□□□□ -0.33
SPG11-207ENST00000558138 METP08581 1390 aa13.01□□□□□ -0.33
SPG11-207ENST00000558138 MSH6P52701 1360 aa13.01□□□□□ -0.33
SPG11-207ENST00000558138 ALKQ9UM73 1620 aa13.01□□□□□ -0.33
SPG11-207ENST00000558138 STK26Q9P289 416 aa12.99□□□□□ -0.33
SPG11-207ENST00000558138 MYOM2P54296 1465 aa12.98□□□□□ -0.33
SPG11-207ENST00000558138 PTPRUQ92729 1446 aa12.98□□□□□ -0.33
SPG11-207ENST00000558138 DHX57Q6P158 1386 aaKnown RBP12.98□□□□□ -0.33
SPG11-207ENST00000558138 PIK3C2GO75747 1445 aa12.97□□□□□ -0.33
SPG11-207ENST00000558138 XIRP1Q702N8 1843 aaKnown RBP12.97□□□□□ -0.33
SPG11-207ENST00000558138 ATF3P18847 181 aa12.97□□□□□ -0.33
SPG11-207ENST00000558138 XRN1Q8IZH2 1706 aaKnown RBP12.96□□□□□ -0.33
SPG11-207ENST00000558138 SIN3AQ96ST3 1273 aa12.96□□□□□ -0.33
SPG11-207ENST00000558138 LAMC1P11047 1609 aa12.95□□□□□ -0.34
SPG11-207ENST00000558138 CFAP70Q5T0N1 1121 aa12.95□□□□□ -0.34
SPG11-207ENST00000558138 TMEM132EQ6IEE7 984 aa12.95□□□□□ -0.34
SPG11-207ENST00000558138 SETD1AO15047 1707 aaKnown RBP12.95□□□□□ -0.34
SPG11-207ENST00000558138 STAC3Q96MF2 364 aa12.94□□□□□ -0.34
SPG11-207ENST00000558138 CADPS2Q86UW7 1296 aa12.93□□□□□ -0.34
SPG11-207ENST00000558138 C19orf44Q9H6X5 657 aa12.93□□□□□ -0.34
SPG11-207ENST00000558138 NCOA3Q9Y6Q9 1424 aa12.93□□□□□ -0.34
SPG11-207ENST00000558138 PTCH1Q13635 1447 aa12.92□□□□□ -0.34
SPG11-207ENST00000558138 C14orf93Q9H972 538 aaKnown RBP12.92□□□□□ -0.34
SPG11-207ENST00000558138 TONSLQ96HA7 1378 aa12.92□□□□□ -0.34
SPG11-207ENST00000558138 NRXN1Q9ULB1 1477 aa12.91□□□□□ -0.34
SPG11-207ENST00000558138 YTHDC2Q9H6S0 1430 aaKnown RBP12.91□□□□□ -0.34
SPG11-207ENST00000558138 LRPPRCP42704 1394 aaKnown RBP12.91□□□□□ -0.34
SPG11-207ENST00000558138 ROBO2Q9HCK4 1378 aa12.91□□□□□ -0.34
SPG11-207ENST00000558138 SIPA1L2Q9P2F8 1722 aaPredicted RBP12.91□□□□□ -0.34
SPG11-207ENST00000558138 POGKQ9P215 609 aa12.9□□□□□ -0.34
SPG11-207ENST00000558138 SLAIN2Q9P270 581 aa12.9□□□□□ -0.34
SPG11-207ENST00000558138 ADGRL3Q9HAR2 1447 aa12.89□□□□□ -0.35
SPG11-207ENST00000558138 ASXL1Q8IXJ9 1541 aa12.89□□□□□ -0.35
SPG11-207ENST00000558138 HSPA1LP34931 641 aa12.89□□□□□ -0.35
SPG11-207ENST00000558138 SAFB2Q14151 953 aaKnown RBP eCLIP12.89□□□□□ -0.35
SPG11-207ENST00000558138 KNDC1Q76NI1 1749 aa12.88□□□□□ -0.35
SPG11-207ENST00000558138 WAPLQ7Z5K2 1190 aa12.88□□□□□ -0.35
SPG11-207ENST00000558138 L3MBTL2Q969R5 705 aa12.88□□□□□ -0.35
SPG11-207ENST00000558138 TRAK1Q9UPV9 953 aa12.88□□□□□ -0.35
SPG11-207ENST00000558138 NALCNQ8IZF0 1738 aa12.88□□□□□ -0.35
SPG11-207ENST00000558138 ROBO1Q9Y6N7 1651 aa12.87□□□□□ -0.35
SPG11-207ENST00000558138 ABCC11Q96J66 1382 aa12.87□□□□□ -0.35
SPG11-207ENST00000558138 CCER1Q8TC90 406 aaPredicted RBP12.87□□□□□ -0.35
SPG11-207ENST00000558138 DCCP43146 1447 aa12.87□□□□□ -0.35
SPG11-207ENST00000558138 PRAM1Q96QH2 718 aa12.86□□□□□ -0.35
SPG11-207ENST00000558138 PRAG1Q86YV5 1406 aa12.86□□□□□ -0.35
SPG11-207ENST00000558138 TECPR2O15040 1411 aa12.85□□□□□ -0.35
SPG11-207ENST00000558138 FAM135BQ49AJ0 1406 aa12.85□□□□□ -0.35
SPG11-207ENST00000558138 PLEKHH1Q9ULM0 1364 aa12.84□□□□□ -0.35
SPG11-207ENST00000558138 NUTM2FA1L443 756 aa12.84□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms