RNA–Protein interactions for RNA: ENST00000555759.1

SYNE3-204, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

TSL 2

Gene SYNE3, Length 5,493 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-204ENST00000555759 ESPNB1AK53 854 aa21.35■■□□□ 1.01
SYNE3-204ENST00000555759 RUFY2Q8WXA3 655 aa21.35■■□□□ 1.01
SYNE3-204ENST00000555759 MNS1Q8NEH6 495 aa21.35■■□□□ 1.01
SYNE3-204ENST00000555759 WASHC2AQ641Q2 1341 aa21.35■■□□□ 1.01
SYNE3-204ENST00000555759 ROCK1Q13464 1354 aa21.34■■□□□ 1.01
SYNE3-204ENST00000555759 SASS6Q6UVJ0 657 aa21.34■■□□□ 1.01
SYNE3-204ENST00000555759 API5Q9BZZ5 524 aaKnown RBP21.33■■□□□ 1.01
SYNE3-204ENST00000555759 UBE2Q2Q8WVN8 375 aa21.32■■□□□ 1
SYNE3-204ENST00000555759 ZKSCAN1P17029 563 aaPredicted RBP21.32■■□□□ 1
SYNE3-204ENST00000555759 RBM10P98175 930 aaKnown RBP21.32■■□□□ 1
SYNE3-204ENST00000555759 CDC45O75419 566 aa21.32■■□□□ 1
SYNE3-204ENST00000555759 TAF3Q5VWG9 929 aa21.31■■□□□ 1
SYNE3-204ENST00000555759 CARMIL2Q6F5E8 1435 aa21.31■■□□□ 1
SYNE3-204ENST00000555759 CAVIN1Q6NZI2 390 aaKnown RBP21.3■■□□□ 1
SYNE3-204ENST00000555759 MIA2Q96PC5 1412 aa21.3■■□□□ 1
SYNE3-204ENST00000555759 HSP90B2PQ58FF3 399 aa21.3■■□□□ 1
SYNE3-204ENST00000555759 TSPY26PQ9H489 355 aa21.3■■□□□ 1
SYNE3-204ENST00000555759 STK26Q9P289 416 aa21.3■■□□□ 1
SYNE3-204ENST00000555759 BICD2Q8TD16 824 aa21.3■■□□□ 1
SYNE3-204ENST00000555759 TPD52L1Q16890 204 aaPredicted RBP21.29■■□□□ 1
SYNE3-204ENST00000555759 SMC3Q9UQE7 1217 aa21.29■■□□□ 1
SYNE3-204ENST00000555759 SOX12O15370 315 aa21.28■■□□□ 1
SYNE3-204ENST00000555759 RUNDC1Q96C34 613 aa21.28■■□□□ 1
SYNE3-204ENST00000555759 CIZ1Q9ULV3 898 aaPredicted RBP21.27■■□□□ 1
SYNE3-204ENST00000555759 PDE3AQ14432 1141 aa21.27■■□□□ 1
SYNE3-204ENST00000555759 GORABQ5T7V8 394 aa21.27■■□□□ 1
SYNE3-204ENST00000555759 WIZO95785 1651 aa21.27■■□□□ 1
SYNE3-204ENST00000555759 CALRP27797 417 aaKnown RBP21.27■□□□□ 0.99
SYNE3-204ENST00000555759 RASSF8Q8NHQ8 419 aa21.26■□□□□ 0.99
SYNE3-204ENST00000555759 SMARCA2P51531 1590 aa21.26■□□□□ 0.99
SYNE3-204ENST00000555759 AKNAQ7Z591 1439 aa21.26■□□□□ 0.99
SYNE3-204ENST00000555759 MCM2P49736 904 aa21.26■□□□□ 0.99
SYNE3-204ENST00000555759 RNF214Q8ND24 703 aa21.25■□□□□ 0.99
SYNE3-204ENST00000555759 RUSC2Q8N2Y8 1516 aa21.25■□□□□ 0.99
SYNE3-204ENST00000555759 NINLQ9Y2I6 1382 aa21.25■□□□□ 0.99
SYNE3-204ENST00000555759 UQCRHLA0A096LP55 91 aa21.25■□□□□ 0.99
SYNE3-204ENST00000555759 IPO7O95373 1038 aaKnown RBP21.25■□□□□ 0.99
SYNE3-204ENST00000555759 UQCRHP07919 91 aa21.25■□□□□ 0.99
SYNE3-204ENST00000555759 LMOD2Q6P5Q4 547 aa21.25■□□□□ 0.99
SYNE3-204ENST00000555759 CREBRFQ8IUR6 639 aa21.25■□□□□ 0.99
SYNE3-204ENST00000555759 MCM4P33991 863 aa21.25■□□□□ 0.99
SYNE3-204ENST00000555759 RABEP1Q15276 862 aa21.25■□□□□ 0.99
SYNE3-204ENST00000555759 LNPKQ9C0E8 428 aa21.25■□□□□ 0.99
SYNE3-204ENST00000555759 AK7Q96M32 723 aa21.25■□□□□ 0.99
SYNE3-204ENST00000555759 ANO2Q9NQ90 1003 aa21.24■□□□□ 0.99
SYNE3-204ENST00000555759 HOOK1Q9UJC3 728 aaKnown RBP21.24■□□□□ 0.99
SYNE3-204ENST00000555759 CWC22Q9HCG8 908 aaKnown RBP21.23■□□□□ 0.99
SYNE3-204ENST00000555759 PANK1Q8TE04 598 aa21.23■□□□□ 0.99
SYNE3-204ENST00000555759 NAT10Q9H0A0 1025 aaKnown RBP21.23■□□□□ 0.99
SYNE3-204ENST00000555759 RNF20Q5VTR2 975 aa21.22■□□□□ 0.99
SYNE3-204ENST00000555759 ZSCAN30Q86W11 494 aa21.22■□□□□ 0.99
SYNE3-204ENST00000555759 EFCAB2Q5VUJ9 269 aa21.22■□□□□ 0.99
SYNE3-204ENST00000555759 CCDC73Q6ZRK6 1079 aa21.22■□□□□ 0.99
SYNE3-204ENST00000555759 ERCC4Q92889 916 aaPredicted RBP21.22■□□□□ 0.99
SYNE3-204ENST00000555759 ANKRD20A12PQ8NF67 263 aa21.22■□□□□ 0.99
SYNE3-204ENST00000555759 CCP110O43303 1012 aa21.22■□□□□ 0.99
SYNE3-204ENST00000555759 WASHC2CQ9Y4E1 1318 aa21.21■□□□□ 0.99
SYNE3-204ENST00000555759 VPS37CA5D8V6 355 aaPredicted RBP21.21■□□□□ 0.99
SYNE3-204ENST00000555759 ZSCAN21Q9Y5A6 473 aaPredicted RBP21.21■□□□□ 0.99
SYNE3-204ENST00000555759 DHX8Q14562 1220 aaKnown RBP21.21■□□□□ 0.99
SYNE3-204ENST00000555759 RRBP1Q9P2E9 1410 aaKnown RBP21.2■□□□□ 0.98
SYNE3-204ENST00000555759 CPLX2Q6PUV4 134 aaKnown RBP21.2■□□□□ 0.98
SYNE3-204ENST00000555759 PDCL3Q9H2J4 239 aa21.2■□□□□ 0.98
SYNE3-204ENST00000555759 PDZRN3Q9UPQ7 1066 aa21.2■□□□□ 0.98
SYNE3-204ENST00000555759 PRPF40AO75400 957 aaKnown RBP21.19■□□□□ 0.98
SYNE3-204ENST00000555759 CDR1P51861 262 aa21.19■□□□□ 0.98
SYNE3-204ENST00000555759 FGD6Q6ZV73 1430 aa21.19■□□□□ 0.98
SYNE3-204ENST00000555759 APPP05067 770 aa21.19■□□□□ 0.98
SYNE3-204ENST00000555759 CHMP3Q9Y3E7 222 aa21.19■□□□□ 0.98
SYNE3-204ENST00000555759 RUFY1Q96T51 708 aa21.18■□□□□ 0.98
SYNE3-204ENST00000555759 PES1O00541 588 aaKnown RBP21.18■□□□□ 0.98
SYNE3-204ENST00000555759 KIF21BO75037 1637 aa21.17■□□□□ 0.98
SYNE3-204ENST00000555759 ELL2O00472 640 aaPredicted RBP21.17■□□□□ 0.98
SYNE3-204ENST00000555759 CLSTN1O94985 981 aa21.17■□□□□ 0.98
SYNE3-204ENST00000555759 PDCL2Q8N4E4 241 aa21.17■□□□□ 0.98
SYNE3-204ENST00000555759 CEP89Q96ST8 783 aa21.17■□□□□ 0.98
SYNE3-204ENST00000555759 TRIM5Q9C035 493 aa21.17■□□□□ 0.98
SYNE3-204ENST00000555759 CDCA7LQ96GN5 454 aa21.16■□□□□ 0.98
SYNE3-204ENST00000555759 LEKR1Q6ZMV7 388 aa21.16■□□□□ 0.98
SYNE3-204ENST00000555759 CUX1P39880 1505 aa21.16■□□□□ 0.98
SYNE3-204ENST00000555759 LRRFIP1Q32MZ4 808 aaKnown RBP21.15■□□□□ 0.98
SYNE3-204ENST00000555759 STAC3Q96MF2 364 aa21.15■□□□□ 0.98
SYNE3-204ENST00000555759 NPHP1O15259 732 aa21.14■□□□□ 0.98
SYNE3-204ENST00000555759 GGT6Q6P531 493 aa21.14■□□□□ 0.97
SYNE3-204ENST00000555759 ADAMTS8Q9UP79 889 aa21.14■□□□□ 0.97
SYNE3-204ENST00000555759 K7ELQ4 463 aaPredicted RBP21.14■□□□□ 0.97
SYNE3-204ENST00000555759 CCDC112Q8NEF3 446 aa21.14■□□□□ 0.97
SYNE3-204ENST00000555759 EVC2Q86UK5 1308 aa21.13■□□□□ 0.97
SYNE3-204ENST00000555759 HNRNPMP52272 730 aaKnown RBP eCLIP21.13■□□□□ 0.97
SYNE3-204ENST00000555759 RIPK4P57078 832 aa21.13■□□□□ 0.97
SYNE3-204ENST00000555759 PNISRQ8TF01 805 aaKnown RBP21.13■□□□□ 0.97
SYNE3-204ENST00000555759 RDXP35241 583 aaKnown RBP21.12■□□□□ 0.97
SYNE3-204ENST00000555759 TRIM29Q14134 588 aa21.12■□□□□ 0.97
SYNE3-204ENST00000555759 GCC1Q96CN9 775 aa21.12■□□□□ 0.97
SYNE3-204ENST00000555759 TAF7LQ5H9L4 462 aa21.11■□□□□ 0.97
SYNE3-204ENST00000555759 MYOM3Q5VTT5 1437 aa21.11■□□□□ 0.97
SYNE3-204ENST00000555759 GNAI1P63096 354 aa21.11■□□□□ 0.97
SYNE3-204ENST00000555759 DIAPH1O60610 1272 aaKnown RBP21.11■□□□□ 0.97
SYNE3-204ENST00000555759 HSP90AB4PQ58FF6 505 aa21.11■□□□□ 0.97
SYNE3-204ENST00000555759 H0YHG0 523 aa21.1■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 66.8 ms