RNA–Protein interactions for RNA: ENST00000553437.1

CCDC88C-206, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 550 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-206ENST00000553437 CPS1P31327 1500 aa15.46■□□□□ 0.07
CCDC88C-206ENST00000553437 TRIM52Q96A61 297 aa15.45■□□□□ 0.06
CCDC88C-206ENST00000553437 CHGAP10645 457 aaKnown RBP15.44■□□□□ 0.06
CCDC88C-206ENST00000553437 RIMS2Q9UQ26 1411 aa15.43■□□□□ 0.06
CCDC88C-206ENST00000553437 TMEM131LA2VDJ0 1609 aa15.43■□□□□ 0.06
CCDC88C-206ENST00000553437 UBAP1LF5GYI3 381 aa15.42■□□□□ 0.06
CCDC88C-206ENST00000553437 HDGFP51858 240 aaKnown RBP15.42■□□□□ 0.06
CCDC88C-206ENST00000553437 SLC26A8Q96RN1 970 aa15.42■□□□□ 0.06
CCDC88C-206ENST00000553437 SLC4A1APQ9BWU0 796 aaKnown RBP15.42■□□□□ 0.06
CCDC88C-206ENST00000553437 PLEKHG1Q9ULL1 1385 aa15.41■□□□□ 0.06
CCDC88C-206ENST00000553437 LRRC7Q96NW7 1537 aa15.4■□□□□ 0.06
CCDC88C-206ENST00000553437 ABCF1Q8NE71 845 aaKnown RBP eCLIP15.4■□□□□ 0.06
CCDC88C-206ENST00000553437 NUTM2DQ5VT03 806 aaPredicted RBP15.39■□□□□ 0.05
CCDC88C-206ENST00000553437 PPP1R15AO75807 674 aaPredicted RBP15.38■□□□□ 0.05
CCDC88C-206ENST00000553437 KCNA6P17658 529 aa15.38■□□□□ 0.05
CCDC88C-206ENST00000553437 STRCP1A6NGW2 1772 aa15.37■□□□□ 0.05
CCDC88C-206ENST00000553437 BCANQ96GW7 911 aa15.37■□□□□ 0.05
CCDC88C-206ENST00000553437 TBX22Q9Y458 520 aa15.37■□□□□ 0.05
CCDC88C-206ENST00000553437 TRPM2O94759 1503 aa15.37■□□□□ 0.05
CCDC88C-206ENST00000553437 SETD5Q9C0A6 1442 aa15.36■□□□□ 0.05
CCDC88C-206ENST00000553437 MPHOSPH9Q99550 1183 aa15.36■□□□□ 0.05
CCDC88C-206ENST00000553437 TOM1O60784 492 aa15.35■□□□□ 0.05
CCDC88C-206ENST00000553437 ADAMTS13Q76LX8 1427 aa15.34■□□□□ 0.05
CCDC88C-206ENST00000553437 SPHKAPQ2M3C7 1700 aa15.34■□□□□ 0.05
CCDC88C-206ENST00000553437 ZNF326Q5BKZ1 582 aaKnown RBP15.33■□□□□ 0.04
CCDC88C-206ENST00000553437 MYO5BQ9ULV0 1848 aa15.33■□□□□ 0.04
CCDC88C-206ENST00000553437 CLTCL1P53675 1640 aa15.32■□□□□ 0.04
CCDC88C-206ENST00000553437 ACIN1Q9UKV3 1341 aaKnown RBP15.32■□□□□ 0.04
CCDC88C-206ENST00000553437 ALKQ9UM73 1620 aa15.32■□□□□ 0.04
CCDC88C-206ENST00000553437 TMEM94Q12767 1356 aa15.31■□□□□ 0.04
CCDC88C-206ENST00000553437 RAB3GAP2Q9H2M9 1393 aa15.31■□□□□ 0.04
CCDC88C-206ENST00000553437 PIP4K2BP78356 416 aa15.3■□□□□ 0.04
CCDC88C-206ENST00000553437 PROSER2Q86WR7 435 aaPredicted RBP15.3■□□□□ 0.04
CCDC88C-206ENST00000553437 RBM33Q96EV2 1170 aaKnown RBP15.3■□□□□ 0.04
CCDC88C-206ENST00000553437 MED1Q15648 1581 aaPredicted RBP15.29■□□□□ 0.04
CCDC88C-206ENST00000553437 NWD1Q149M9 1564 aa15.28■□□□□ 0.04
CCDC88C-206ENST00000553437 NKTRP30414 1462 aaKnown RBP15.28■□□□□ 0.04
CCDC88C-206ENST00000553437 PIK3R4Q99570 1358 aa15.28■□□□□ 0.04
CCDC88C-206ENST00000553437 RPGRIP1LQ68CZ1 1315 aa15.27■□□□□ 0.04
CCDC88C-206ENST00000553437 NEXMIFQ5QGS0 1516 aa15.27■□□□□ 0.03
CCDC88C-206ENST00000553437 SCAF1Q9H7N4 1312 aaKnown RBP15.26■□□□□ 0.03
CCDC88C-206ENST00000553437 HRCP23327 699 aa15.26■□□□□ 0.03
CCDC88C-206ENST00000553437 HSPA1LP34931 641 aa15.26■□□□□ 0.03
CCDC88C-206ENST00000553437 PTPRUQ92729 1446 aa15.26■□□□□ 0.03
CCDC88C-206ENST00000553437 DIP2AQ14689 1571 aa15.25■□□□□ 0.03
CCDC88C-206ENST00000553437 SETBP1Q9Y6X0 1596 aa15.25■□□□□ 0.03
CCDC88C-206ENST00000553437 VGFO15240 615 aaPredicted RBP15.25■□□□□ 0.03
CCDC88C-206ENST00000553437 AMOTL2Q9Y2J4 779 aa15.25■□□□□ 0.03
CCDC88C-206ENST00000553437 CCDC144AA2RUR9 1427 aa15.25■□□□□ 0.03
CCDC88C-206ENST00000553437 METP08581 1390 aa15.24■□□□□ 0.03
CCDC88C-206ENST00000553437 SPATA31E1Q6ZUB1 1445 aa15.24■□□□□ 0.03
CCDC88C-206ENST00000553437 NRXN3Q9Y4C0 1643 aa15.23■□□□□ 0.03
CCDC88C-206ENST00000553437 NCOA3Q9Y6Q9 1424 aa15.22■□□□□ 0.03
CCDC88C-206ENST00000553437 XIRP1Q702N8 1843 aaKnown RBP15.22■□□□□ 0.03
CCDC88C-206ENST00000553437 RGL3Q3MIN7 710 aa15.21■□□□□ 0.03
CCDC88C-206ENST00000553437 CHD2O14647 1828 aaKnown RBP15.21■□□□□ 0.03
CCDC88C-206ENST00000553437 MSH6P52701 1360 aa15.2■□□□□ 0.02
CCDC88C-206ENST00000553437 FAM135BQ49AJ0 1406 aa15.19■□□□□ 0.02
CCDC88C-206ENST00000553437 KIF1BO60333 1816 aa15.19■□□□□ 0.02
CCDC88C-206ENST00000553437 ADGRF5Q8IZF2 1346 aa15.18■□□□□ 0.02
CCDC88C-206ENST00000553437 ANKRD30BQ9BXX2 1392 aa15.18■□□□□ 0.02
CCDC88C-206ENST00000553437 C19orf44Q9H6X5 657 aa15.17■□□□□ 0.02
CCDC88C-206ENST00000553437 SLAIN2Q9P270 581 aa15.17■□□□□ 0.02
CCDC88C-206ENST00000553437 C14orf37Q86TY3 774 aa15.15■□□□□ 0.02
CCDC88C-206ENST00000553437 XRN1Q8IZH2 1706 aaKnown RBP15.14■□□□□ 0.01
CCDC88C-206ENST00000553437 CADPS2Q86UW7 1296 aa15.13■□□□□ 0.01
CCDC88C-206ENST00000553437 PPLO60437 1756 aa15.12■□□□□ 0.01
CCDC88C-206ENST00000553437 ROBO2Q9HCK4 1378 aa15.11■□□□□ 0.01
CCDC88C-206ENST00000553437 PRAG1Q86YV5 1406 aa15.11■□□□□ 0.01
CCDC88C-206ENST00000553437 ATF3P18847 181 aa15.11■□□□□ 0.01
CCDC88C-206ENST00000553437 PIK3C2GO75747 1445 aa15.1■□□□□ 0.01
CCDC88C-206ENST00000553437 PTCH1Q13635 1447 aa15.1■□□□□ 0.01
CCDC88C-206ENST00000553437 SETD1AO15047 1707 aaKnown RBP15.09■□□□□ 0.01
CCDC88C-206ENST00000553437 C14orf93Q9H972 538 aaKnown RBP15.09■□□□□ 0.01
CCDC88C-206ENST00000553437 DCCP43146 1447 aa15.09■□□□□ 0.01
CCDC88C-206ENST00000553437 NRXN1Q9ULB1 1477 aa15.08■□□□□ 0.01
CCDC88C-206ENST00000553437 ADGRL3Q9HAR2 1447 aa15.08■□□□□ 0
CCDC88C-206ENST00000553437 SIPA1L2Q9P2F8 1722 aaPredicted RBP15.07■□□□□ 0
CCDC88C-206ENST00000553437 TMEM132EQ6IEE7 984 aa15.07■□□□□ 0
CCDC88C-206ENST00000553437 MYOM2P54296 1465 aa15.07■□□□□ 0
CCDC88C-206ENST00000553437 ROBO1Q9Y6N7 1651 aa15.06■□□□□ 0
CCDC88C-206ENST00000553437 LRPPRCP42704 1394 aaKnown RBP15.06■□□□□ 0
CCDC88C-206ENST00000553437 IFT172Q9UG01 1749 aa15.06■□□□□ 0
CCDC88C-206ENST00000553437 CFAP70Q5T0N1 1121 aa15.05■□□□□ -0
CCDC88C-206ENST00000553437 BRINP3Q76B58 766 aa15.05■□□□□ -0
CCDC88C-206ENST00000553437 STK26Q9P289 416 aa15.05■□□□□ -0
CCDC88C-206ENST00000553437 DHX57Q6P158 1386 aaKnown RBP15.05■□□□□ -0
CCDC88C-206ENST00000553437 ABCC11Q96J66 1382 aa15.05■□□□□ -0
CCDC88C-206ENST00000553437 TECPR2O15040 1411 aa15.05■□□□□ -0
CCDC88C-206ENST00000553437 MST1RQ04912 1400 aa15.05■□□□□ -0
CCDC88C-206ENST00000553437 ASXL1Q8IXJ9 1541 aa15.05■□□□□ -0
CCDC88C-206ENST00000553437 WAPLQ7Z5K2 1190 aa15.03■□□□□ -0
CCDC88C-206ENST00000553437 YTHDC2Q9H6S0 1430 aaKnown RBP15.02■□□□□ -0
CCDC88C-206ENST00000553437 DCAF11Q8TEB1 546 aa15.02■□□□□ -0
CCDC88C-206ENST00000553437 SIRT1Q96EB6 747 aa15.02■□□□□ -0
CCDC88C-206ENST00000553437 STAC3Q96MF2 364 aa15.02■□□□□ -0
CCDC88C-206ENST00000553437 KDM2AQ9Y2K7 1162 aa15.02■□□□□ -0
CCDC88C-206ENST00000553437 SRCAPQ6ZRS2 3230 aa15.02□□□□□ -0.01
CCDC88C-206ENST00000553437 PLEKHH1Q9ULM0 1364 aa15□□□□□ -0.01
CCDC88C-206ENST00000553437 C1orf167Q5SNV9 1468 aa15□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms