RNA–Protein interactions for RNA: ENST00000544268.5

CHFR-223, Transcript of checkpoint with forkhead and ring finger domains, humanhuman

TSL 5

Gene CHFR, Length 2,412 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHFR-223ENST00000544268 USP47Q96K76 1375 aa20.46■□□□□ 0.87
CHFR-223ENST00000544268 ARHGAP31Q2M1Z3 1444 aa20.46■□□□□ 0.87
CHFR-223ENST00000544268 NOS1P29475 1434 aa20.44■□□□□ 0.86
CHFR-223ENST00000544268 MLECQ14165 292 aa20.44■□□□□ 0.86
CHFR-223ENST00000544268 KIF1BO60333 1816 aa20.44■□□□□ 0.86
CHFR-223ENST00000544268 CARD11Q9BXL7 1154 aa20.44■□□□□ 0.86
CHFR-223ENST00000544268 TRPM1Q7Z4N2 1603 aa20.44■□□□□ 0.86
CHFR-223ENST00000544268 UBE2Q2Q8WVN8 375 aa20.43■□□□□ 0.86
CHFR-223ENST00000544268 NEURL4Q96JN8 1562 aa20.43■□□□□ 0.86
CHFR-223ENST00000544268 ROCK2O75116 1388 aaKnown RBP20.42■□□□□ 0.86
CHFR-223ENST00000544268 EIF5BO60841 1220 aaKnown RBP20.42■□□□□ 0.86
CHFR-223ENST00000544268 DAXXQ9UER7 740 aaPredicted RBP20.42■□□□□ 0.86
CHFR-223ENST00000544268 MROH2AA6NES4 1674 aa20.42■□□□□ 0.86
CHFR-223ENST00000544268 SYNMO15061 1565 aa20.41■□□□□ 0.86
CHFR-223ENST00000544268 NBPF1Q3BBV0 1214 aa20.41■□□□□ 0.86
CHFR-223ENST00000544268 PPP6R1Q9UPN7 881 aa20.4■□□□□ 0.86
CHFR-223ENST00000544268 CHGAP10645 457 aaKnown RBP20.39■□□□□ 0.85
CHFR-223ENST00000544268 ADGRB3O60242 1522 aa20.39■□□□□ 0.85
CHFR-223ENST00000544268 MADDQ8WXG6 1647 aa20.38■□□□□ 0.85
CHFR-223ENST00000544268 CLTCQ00610 1675 aaKnown RBP20.38■□□□□ 0.85
CHFR-223ENST00000544268 PREX1Q8TCU6 1659 aa20.37■□□□□ 0.85
CHFR-223ENST00000544268 PIK3C2BO00750 1634 aa20.37■□□□□ 0.85
CHFR-223ENST00000544268 FBXO31Q5XUX0 539 aaPredicted RBP20.36■□□□□ 0.85
CHFR-223ENST00000544268 ARID4BQ4LE39 1312 aaPredicted RBP20.36■□□□□ 0.85
CHFR-223ENST00000544268 STAC3Q96MF2 364 aa20.36■□□□□ 0.85
CHFR-223ENST00000544268 GPRASP1Q5JY77 1395 aa20.35■□□□□ 0.85
CHFR-223ENST00000544268 ST20-MTHFSA0A0A6YYL1 179 aa20.35■□□□□ 0.85
CHFR-223ENST00000544268 DEKP35659 375 aaKnown RBP20.34■□□□□ 0.85
CHFR-223ENST00000544268 IDI1Q13907 227 aa20.34■□□□□ 0.85
CHFR-223ENST00000544268 IFT172Q9UG01 1749 aa20.34■□□□□ 0.85
CHFR-223ENST00000544268 POLR1AO95602 1720 aaPredicted RBP20.32■□□□□ 0.84
CHFR-223ENST00000544268 MYOM2P54296 1465 aa20.32■□□□□ 0.84
CHFR-223ENST00000544268 ERVK-7P63135 1459 aa20.32■□□□□ 0.84
CHFR-223ENST00000544268 ADGRF5Q8IZF2 1346 aa20.32■□□□□ 0.84
CHFR-223ENST00000544268 SLC52A1Q9NWF4 448 aa20.31■□□□□ 0.84
CHFR-223ENST00000544268 LAMC1P11047 1609 aa20.3■□□□□ 0.84
CHFR-223ENST00000544268 ESF1Q9H501 851 aaKnown RBP20.29■□□□□ 0.84
CHFR-223ENST00000544268 PPLO60437 1756 aa20.28■□□□□ 0.84
CHFR-223ENST00000544268 ZMYM3Q14202 1370 aa20.27■□□□□ 0.83
CHFR-223ENST00000544268 NRXN1Q9ULB1 1477 aa20.27■□□□□ 0.83
CHFR-223ENST00000544268 ZBED9Q6R2W3 1325 aa20.26■□□□□ 0.83
CHFR-223ENST00000544268 RPGRIP1LQ68CZ1 1315 aa20.25■□□□□ 0.83
CHFR-223ENST00000544268 SPATA31D1Q6ZQQ2 1576 aa20.25■□□□□ 0.83
CHFR-223ENST00000544268 CFAP70Q5T0N1 1121 aa20.25■□□□□ 0.83
CHFR-223ENST00000544268 MYO5BQ9ULV0 1848 aa20.24■□□□□ 0.83
CHFR-223ENST00000544268 KIAA1210Q9ULL0 1709 aa20.24■□□□□ 0.83
CHFR-223ENST00000544268 TMEM131LA2VDJ0 1609 aa20.24■□□□□ 0.83
CHFR-223ENST00000544268 NUTM2DQ5VT03 806 aaPredicted RBP20.23■□□□□ 0.83
CHFR-223ENST00000544268 NEXMIFQ5QGS0 1516 aa20.23■□□□□ 0.83
CHFR-223ENST00000544268 PIK3C2GO75747 1445 aa20.21■□□□□ 0.83
CHFR-223ENST00000544268 B4GALNT3Q6L9W6 998 aa20.21■□□□□ 0.83
CHFR-223ENST00000544268 IQGAP1P46940 1657 aa20.2■□□□□ 0.82
CHFR-223ENST00000544268 ERICH6BQ5W0A0 696 aa20.18■□□□□ 0.82
CHFR-223ENST00000544268 TESK2Q96S53 571 aa20.18■□□□□ 0.82
CHFR-223ENST00000544268 SCAF11Q99590 1463 aaKnown RBP20.18■□□□□ 0.82
CHFR-223ENST00000544268 VGFO15240 615 aaPredicted RBP20.17■□□□□ 0.82
CHFR-223ENST00000544268 STAG3Q9UJ98 1225 aa20.17■□□□□ 0.82
CHFR-223ENST00000544268 PNISRQ8TF01 805 aaKnown RBP20.16■□□□□ 0.82
CHFR-223ENST00000544268 C14orf93Q9H972 538 aaKnown RBP20.16■□□□□ 0.82
CHFR-223ENST00000544268 TMC1Q8TDI8 760 aa20.15■□□□□ 0.82
CHFR-223ENST00000544268 SALL2Q9Y467 1007 aaPredicted RBP20.14■□□□□ 0.81
CHFR-223ENST00000544268 A2ML1A8K2U0 1454 aa20.13■□□□□ 0.81
CHFR-223ENST00000544268 TNRQ92752 1358 aa20.13■□□□□ 0.81
CHFR-223ENST00000544268 ZFYVE9O95405 1425 aa20.13■□□□□ 0.81
CHFR-223ENST00000544268 CEBPAP49715 358 aaPredicted RBP20.13■□□□□ 0.81
CHFR-223ENST00000544268 DISP3Q9P2K9 1392 aa20.13■□□□□ 0.81
CHFR-223ENST00000544268 SENP3Q9H4L4 574 aaPredicted RBP20.12■□□□□ 0.81
CHFR-223ENST00000544268 SETBP1Q9Y6X0 1596 aa20.12■□□□□ 0.81
CHFR-223ENST00000544268 FER1L4A9Z1Z3 1794 aa20.11■□□□□ 0.81
CHFR-223ENST00000544268 ADGRB1O14514 1584 aa20.11■□□□□ 0.81
CHFR-223ENST00000544268 TMEM132EQ6IEE7 984 aa20.11■□□□□ 0.81
CHFR-223ENST00000544268 PPP4R2Q9NY27 417 aa20.11■□□□□ 0.81
CHFR-223ENST00000544268 EIF3AQ14152 1382 aaKnown RBP20.1■□□□□ 0.81
CHFR-223ENST00000544268 TMF1P82094 1093 aa20.08■□□□□ 0.81
CHFR-223ENST00000544268 C3P01024 1663 aa20.08■□□□□ 0.81
CHFR-223ENST00000544268 PLPPR3Q6T4P5 718 aa20.07■□□□□ 0.8
CHFR-223ENST00000544268 CC2D1BQ5T0F9 858 aaKnown RBP20.06■□□□□ 0.8
CHFR-223ENST00000544268 RIMS2Q9UQ26 1411 aa20.06■□□□□ 0.8
CHFR-223ENST00000544268 TRAK1Q9UPV9 953 aa20.06■□□□□ 0.8
CHFR-223ENST00000544268 PLEKHG5O94827 1062 aa20.05■□□□□ 0.8
CHFR-223ENST00000544268 NUDCQ9Y266 331 aa20.05■□□□□ 0.8
CHFR-223ENST00000544268 SMG6Q86US8 1419 aaKnown RBP20.05■□□□□ 0.8
CHFR-223ENST00000544268 MYBBP1AQ9BQG0 1328 aaKnown RBP20.04■□□□□ 0.8
CHFR-223ENST00000544268 PER1O15534 1290 aaPredicted RBP20.03■□□□□ 0.8
CHFR-223ENST00000544268 NOP58Q9Y2X3 529 aaKnown RBP20.03■□□□□ 0.8
CHFR-223ENST00000544268 ASXL1Q8IXJ9 1541 aa20.02■□□□□ 0.8
CHFR-223ENST00000544268 UBR1Q8IWV7 1749 aa20.02■□□□□ 0.8
CHFR-223ENST00000544268 MYO3AQ8NEV4 1616 aa20.01■□□□□ 0.79
CHFR-223ENST00000544268 NLRP1Q9C000 1473 aa20■□□□□ 0.79
CHFR-223ENST00000544268 PANK3Q9H999 370 aa20■□□□□ 0.79
CHFR-223ENST00000544268 CENPJQ9HC77 1338 aaPredicted RBP20■□□□□ 0.79
CHFR-223ENST00000544268 KDM5AP29375 1690 aaKnown RBP20■□□□□ 0.79
CHFR-223ENST00000544268 ALKQ9UM73 1620 aa20■□□□□ 0.79
CHFR-223ENST00000544268 CCDC136Q96JN2 1154 aa20■□□□□ 0.79
CHFR-223ENST00000544268 LRPPRCP42704 1394 aaKnown RBP19.99■□□□□ 0.79
CHFR-223ENST00000544268 RALBP1Q15311 655 aa19.98■□□□□ 0.79
CHFR-223ENST00000544268 RIMS1Q86UR5 1692 aaKnown RBP19.97■□□□□ 0.79
CHFR-223ENST00000544268 BRD4O60885 1362 aaPredicted RBP19.97■□□□□ 0.79
CHFR-223ENST00000544268 TMEM2Q9UHN6 1383 aa19.97■□□□□ 0.79
CHFR-223ENST00000544268 ABCF1Q8NE71 845 aaKnown RBP eCLIP19.97■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 50.7 ms