RNA–Protein interactions for RNA: ENST00000543185.5

HDAC4-215, Transcript of histone deacetylase 4, humanhuman

TSL 5 BASIC

Gene HDAC4, Length 8,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-215ENST00000543185 PCMTD1Q96MG8 357 aaPredicted RBP23.45■■□□□ 1.34
HDAC4-215ENST00000543185 PKD2Q13563 968 aa23.45■■□□□ 1.34
HDAC4-215ENST00000543185 CCDC73Q6ZRK6 1079 aa23.44■■□□□ 1.34
HDAC4-215ENST00000543185 PDE4CQ08493 712 aa23.44■■□□□ 1.34
HDAC4-215ENST00000543185 NUP155O75694 1391 aa23.44■■□□□ 1.34
HDAC4-215ENST00000543185 CARMIL1Q5VZK9 1371 aa23.43■■□□□ 1.34
HDAC4-215ENST00000543185 CUX1P39880 1505 aa23.43■■□□□ 1.34
HDAC4-215ENST00000543185 VPS53Q5VIR6 699 aa23.43■■□□□ 1.34
HDAC4-215ENST00000543185 BICD2Q8TD16 824 aa23.43■■□□□ 1.34
HDAC4-215ENST00000543185 CUX2O14529 1486 aa23.43■■□□□ 1.34
HDAC4-215ENST00000543185 INTS3Q68E01 1043 aaKnown RBP23.43■■□□□ 1.34
HDAC4-215ENST00000543185 TXLNBQ8N3L3 684 aa23.43■■□□□ 1.34
HDAC4-215ENST00000543185 WWC1Q8IX03 1113 aa23.42■■□□□ 1.34
HDAC4-215ENST00000543185 OLFM4Q6UX06 510 aa23.41■■□□□ 1.34
HDAC4-215ENST00000543185 ANO8Q9HCE9 1232 aaPredicted RBP23.41■■□□□ 1.34
HDAC4-215ENST00000543185 CPLX1O14810 134 aa23.41■■□□□ 1.34
HDAC4-215ENST00000543185 ANKRD45Q5TZF3 282 aa23.41■■□□□ 1.34
HDAC4-215ENST00000543185 PRDM2Q13029 1718 aa23.4■■□□□ 1.34
HDAC4-215ENST00000543185 ABCF1Q8NE71 845 aaKnown RBP eCLIP23.4■■□□□ 1.34
HDAC4-215ENST00000543185 NEXNQ0ZGT2 675 aa23.4■■□□□ 1.34
HDAC4-215ENST00000543185 GOLGA6L10A6NI86 522 aa23.4■■□□□ 1.34
HDAC4-215ENST00000543185 MPHOSPH9Q99550 1183 aa23.4■■□□□ 1.34
HDAC4-215ENST00000543185 TSPYL1Q9H0U9 437 aa23.4■■□□□ 1.34
HDAC4-215ENST00000543185 SLC4A10Q6U841 1118 aa23.39■■□□□ 1.34
HDAC4-215ENST00000543185 ZSCAN21Q9Y5A6 473 aaPredicted RBP23.39■■□□□ 1.34
HDAC4-215ENST00000543185 NINLQ9Y2I6 1382 aa23.38■■□□□ 1.33
HDAC4-215ENST00000543185 CCDC144AA2RUR9 1427 aa23.38■■□□□ 1.33
HDAC4-215ENST00000543185 KIAA0754O94854 1291 aa23.38■■□□□ 1.33
HDAC4-215ENST00000543185 RILPL2Q969X0 211 aa23.38■■□□□ 1.33
HDAC4-215ENST00000543185 FOXD4L5Q5VV16 416 aaPredicted RBP23.38■■□□□ 1.33
HDAC4-215ENST00000543185 FOXD4L4Q8WXT5 416 aaPredicted RBP23.38■■□□□ 1.33
HDAC4-215ENST00000543185 PDCP20941 246 aa23.37■■□□□ 1.33
HDAC4-215ENST00000543185 IQCEQ6IPM2 695 aa23.37■■□□□ 1.33
HDAC4-215ENST00000543185 MCM2P49736 904 aa23.36■■□□□ 1.33
HDAC4-215ENST00000543185 SAFBQ15424 915 aaKnown RBP eCLIP23.36■■□□□ 1.33
HDAC4-215ENST00000543185 TOMM22Q9NS69 142 aa23.36■■□□□ 1.33
HDAC4-215ENST00000543185 ABCC8Q09428 1581 aa23.35■■□□□ 1.33
HDAC4-215ENST00000543185 EIF3JO75822 258 aaKnown RBP23.35■■□□□ 1.33
HDAC4-215ENST00000543185 ODF2Q5BJF6 829 aa23.35■■□□□ 1.33
HDAC4-215ENST00000543185 CT47A1Q5JQC4 288 aaPredicted RBP23.35■■□□□ 1.33
HDAC4-215ENST00000543185 RSPH4AQ5TD94 716 aa23.35■■□□□ 1.33
HDAC4-215ENST00000543185 TRDNQ13061 729 aa23.35■■□□□ 1.33
HDAC4-215ENST00000543185 SMARCE1Q969G3 411 aa23.35■■□□□ 1.33
HDAC4-215ENST00000543185 EPS15P42566 896 aa23.34■■□□□ 1.33
HDAC4-215ENST00000543185 PIP4K2AP48426 406 aaPredicted RBP23.34■■□□□ 1.33
HDAC4-215ENST00000543185 ERLIN2O94905 339 aa23.34■■□□□ 1.33
HDAC4-215ENST00000543185 SMC3Q9UQE7 1217 aa23.34■■□□□ 1.33
HDAC4-215ENST00000543185 CLUAP1Q96AJ1 413 aa23.33■■□□□ 1.33
HDAC4-215ENST00000543185 LUC7LQ9NQ29 371 aaKnown RBP23.32■■□□□ 1.32
HDAC4-215ENST00000543185 NAP1L1P55209 391 aaKnown RBP23.32■■□□□ 1.32
HDAC4-215ENST00000543185 BRMS1Q9HCU9 246 aa23.32■■□□□ 1.32
HDAC4-215ENST00000543185 DEF6Q9H4E7 631 aa23.31■■□□□ 1.32
HDAC4-215ENST00000543185 ERC2O15083 957 aa23.31■■□□□ 1.32
HDAC4-215ENST00000543185 SOX12O15370 315 aa23.3■■□□□ 1.32
HDAC4-215ENST00000543185 NOL10Q9BSC4 688 aaKnown RBP23.3■■□□□ 1.32
HDAC4-215ENST00000543185 ERLIN1O75477 346 aa23.3■■□□□ 1.32
HDAC4-215ENST00000543185 ANO2Q9NQ90 1003 aa23.3■■□□□ 1.32
HDAC4-215ENST00000543185 RABEP1Q15276 862 aa23.29■■□□□ 1.32
HDAC4-215ENST00000543185 USP47Q96K76 1375 aa23.29■■□□□ 1.32
HDAC4-215ENST00000543185 NFKBIBQ15653 356 aa23.29■■□□□ 1.32
HDAC4-215ENST00000543185 PSMA5P28066 241 aa23.28■■□□□ 1.32
HDAC4-215ENST00000543185 HSP90AB4PQ58FF6 505 aa23.28■■□□□ 1.32
HDAC4-215ENST00000543185 C22orf23Q9BZE7 217 aa23.28■■□□□ 1.32
HDAC4-215ENST00000543185 FRAT2O75474 233 aaPredicted RBP23.28■■□□□ 1.32
HDAC4-215ENST00000543185 ERICH2A1L162 156 aa23.28■■□□□ 1.32
HDAC4-215ENST00000543185 ANKRD18AQ8IVF6 992 aa23.28■■□□□ 1.32
HDAC4-215ENST00000543185 G3V3G9 751 aa23.28■■□□□ 1.32
HDAC4-215ENST00000543185 DCAF8Q5TAQ9 597 aa23.28■■□□□ 1.32
HDAC4-215ENST00000543185 KINO60870 393 aaKnown RBP23.27■■□□□ 1.32
HDAC4-215ENST00000543185 PDIA4P13667 645 aaKnown RBP23.27■■□□□ 1.32
HDAC4-215ENST00000543185 XBP1P17861 261 aa23.27■■□□□ 1.32
HDAC4-215ENST00000543185 PDCL2Q8N4E4 241 aa23.27■■□□□ 1.32
HDAC4-215ENST00000543185 R3HCC1Q9Y3T6 440 aaKnown RBP23.26■■□□□ 1.31
HDAC4-215ENST00000543185 TSPY26PQ9H489 355 aa23.25■■□□□ 1.31
HDAC4-215ENST00000543185 PAK3O75914 559 aaPredicted RBP23.24■■□□□ 1.31
HDAC4-215ENST00000543185 TOP2AP11388 1531 aaKnown RBP23.24■■□□□ 1.31
HDAC4-215ENST00000543185 CSB-PGBD3P0DP91 1061 aa23.24■■□□□ 1.31
HDAC4-215ENST00000543185 SAFB2Q14151 953 aaKnown RBP eCLIP23.24■■□□□ 1.31
HDAC4-215ENST00000543185 ZNF330Q9Y3S2 320 aaPredicted RBP23.24■■□□□ 1.31
HDAC4-215ENST00000543185 CT47B1P0C2W7 299 aaPredicted RBP23.23■■□□□ 1.31
HDAC4-215ENST00000543185 CCDC146Q8IYE0 955 aa23.23■■□□□ 1.31
HDAC4-215ENST00000543185 API5Q9BZZ5 524 aaKnown RBP23.23■■□□□ 1.31
HDAC4-215ENST00000543185 CCDC43Q96MW1 224 aaKnown RBP23.23■■□□□ 1.31
HDAC4-215ENST00000543185 TRIM5Q9C035 493 aa23.23■■□□□ 1.31
HDAC4-215ENST00000543185 AXDND1Q5T1B0 1012 aaPredicted RBP23.23■■□□□ 1.31
HDAC4-215ENST00000543185 DYDC1Q8WWB3 177 aa23.23■■□□□ 1.31
HDAC4-215ENST00000543185 OFD1O75665 1012 aa23.22■■□□□ 1.31
HDAC4-215ENST00000543185 DZIP1LQ8IYY4 767 aaKnown RBP23.22■■□□□ 1.31
HDAC4-215ENST00000543185 HSP90AB2PQ58FF8 381 aa23.22■■□□□ 1.31
HDAC4-215ENST00000543185 IFIT2P09913 472 aaKnown RBP23.22■■□□□ 1.31
HDAC4-215ENST00000543185 C9orf78Q9NZ63 289 aaPredicted RBP23.22■■□□□ 1.31
HDAC4-215ENST00000543185 VPS37CA5D8V6 355 aaPredicted RBP23.21■■□□□ 1.31
HDAC4-215ENST00000543185 CRBNQ96SW2 442 aa23.21■■□□□ 1.31
HDAC4-215ENST00000543185 DHX16O60231 1041 aaKnown RBP23.2■■□□□ 1.3
HDAC4-215ENST00000543185 PRKRIP1Q9H875 184 aaPredicted RBP23.2■■□□□ 1.3
HDAC4-215ENST00000543185 SOGA1O94964 1423 aa23.2■■□□□ 1.3
HDAC4-215ENST00000543185 SCAPERQ9BY12 1400 aa23.2■■□□□ 1.3
HDAC4-215ENST00000543185 FOXD4L6Q3SYB3 417 aaPredicted RBP23.2■■□□□ 1.3
HDAC4-215ENST00000543185 FOXD4L3Q6VB84 417 aaPredicted RBP23.2■■□□□ 1.3
HDAC4-215ENST00000543185 FILIP1LQ4L180 1135 aa23.19■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms