RNA–Protein interactions for RNA: ENST00000543016.1

DDX55-210, Transcript of DEAD-box helicase 55, humanhuman

TSL 3

Gene DDX55, Length 329 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55-210ENST00000543016 KIF1BO60333 1816 aa17.7■□□□□ 0.42
DDX55-210ENST00000543016 HSPA2P54652 639 aa17.69■□□□□ 0.42
DDX55-210ENST00000543016 ZNF326Q5BKZ1 582 aaKnown RBP17.68■□□□□ 0.42
DDX55-210ENST00000543016 DMRT2Q9Y5R5 561 aa17.68■□□□□ 0.42
DDX55-210ENST00000543016 TXNDC2Q86VQ3 553 aa17.67■□□□□ 0.42
DDX55-210ENST00000543016 CCER1Q8TC90 406 aaPredicted RBP17.67■□□□□ 0.42
DDX55-210ENST00000543016 RIMS2Q9UQ26 1411 aa17.66■□□□□ 0.42
DDX55-210ENST00000543016 ZFYVE9O95405 1425 aa17.65■□□□□ 0.42
DDX55-210ENST00000543016 VGFO15240 615 aaPredicted RBP17.65■□□□□ 0.42
DDX55-210ENST00000543016 SCAF11Q99590 1463 aaKnown RBP17.64■□□□□ 0.41
DDX55-210ENST00000543016 PPP1R15AO75807 674 aaPredicted RBP17.63■□□□□ 0.41
DDX55-210ENST00000543016 RGL3Q3MIN7 710 aa17.63■□□□□ 0.41
DDX55-210ENST00000543016 MED14O60244 1454 aa17.63■□□□□ 0.41
DDX55-210ENST00000543016 LTKP29376 864 aa17.62■□□□□ 0.41
DDX55-210ENST00000543016 SIN3AQ96ST3 1273 aa17.62■□□□□ 0.41
DDX55-210ENST00000543016 TIMELESSQ9UNS1 1208 aa17.62■□□□□ 0.41
DDX55-210ENST00000543016 NEUROD1Q13562 356 aa17.6■□□□□ 0.41
DDX55-210ENST00000543016 NCKAP5LQ9HCH0 1330 aa17.6■□□□□ 0.41
DDX55-210ENST00000543016 PLEKHG1Q9ULL1 1385 aa17.6■□□□□ 0.41
DDX55-210ENST00000543016 MYO5BQ9ULV0 1848 aa17.59■□□□□ 0.41
DDX55-210ENST00000543016 NEXMIFQ5QGS0 1516 aa17.59■□□□□ 0.41
DDX55-210ENST00000543016 NPHP4O75161 1426 aaPredicted RBP17.58■□□□□ 0.41
DDX55-210ENST00000543016 MYOM2P54296 1465 aa17.56■□□□□ 0.4
DDX55-210ENST00000543016 POLR1AO95602 1720 aaPredicted RBP17.56■□□□□ 0.4
DDX55-210ENST00000543016 DCAF11Q8TEB1 546 aa17.56■□□□□ 0.4
DDX55-210ENST00000543016 STRCQ7RTU9 1775 aa17.56■□□□□ 0.4
DDX55-210ENST00000543016 TONSLQ96HA7 1378 aa17.55■□□□□ 0.4
DDX55-210ENST00000543016 L3MBTL2Q969R5 705 aa17.54■□□□□ 0.4
DDX55-210ENST00000543016 BCANQ96GW7 911 aa17.54■□□□□ 0.4
DDX55-210ENST00000543016 TBX22Q9Y458 520 aa17.54■□□□□ 0.4
DDX55-210ENST00000543016 PPLO60437 1756 aa17.53■□□□□ 0.4
DDX55-210ENST00000543016 NUTM2DQ5VT03 806 aaPredicted RBP17.53■□□□□ 0.4
DDX55-210ENST00000543016 NRXN1Q9ULB1 1477 aa17.52■□□□□ 0.4
DDX55-210ENST00000543016 ADGRF5Q8IZF2 1346 aa17.51■□□□□ 0.39
DDX55-210ENST00000543016 IFT172Q9UG01 1749 aa17.51■□□□□ 0.39
DDX55-210ENST00000543016 SETBP1Q9Y6X0 1596 aa17.51■□□□□ 0.39
DDX55-210ENST00000543016 IQGAP1P46940 1657 aa17.51■□□□□ 0.39
DDX55-210ENST00000543016 KDM2AQ9Y2K7 1162 aa17.5■□□□□ 0.39
DDX55-210ENST00000543016 PIK3R4Q99570 1358 aa17.5■□□□□ 0.39
DDX55-210ENST00000543016 DIP2AQ14689 1571 aa17.49■□□□□ 0.39
DDX55-210ENST00000543016 PIK3C2GO75747 1445 aa17.49■□□□□ 0.39
DDX55-210ENST00000543016 ADAMTS13Q76LX8 1427 aa17.48■□□□□ 0.39
DDX55-210ENST00000543016 C14orf93Q9H972 538 aaKnown RBP17.48■□□□□ 0.39
DDX55-210ENST00000543016 SLC26A8Q96RN1 970 aa17.47■□□□□ 0.39
DDX55-210ENST00000543016 PRAG1Q86YV5 1406 aa17.45■□□□□ 0.38
DDX55-210ENST00000543016 KCNA6P17658 529 aa17.43■□□□□ 0.38
DDX55-210ENST00000543016 ALKQ9UM73 1620 aa17.43■□□□□ 0.38
DDX55-210ENST00000543016 NRXN3Q9Y4C0 1643 aa17.43■□□□□ 0.38
DDX55-210ENST00000543016 LAMC1P11047 1609 aa17.42■□□□□ 0.38
DDX55-210ENST00000543016 CFAP70Q5T0N1 1121 aa17.41■□□□□ 0.38
DDX55-210ENST00000543016 METP08581 1390 aa17.39■□□□□ 0.37
DDX55-210ENST00000543016 KIAA1210Q9ULL0 1709 aa17.38■□□□□ 0.37
DDX55-210ENST00000543016 SIRT1Q96EB6 747 aa17.37■□□□□ 0.37
DDX55-210ENST00000543016 AMOTL2Q9Y2J4 779 aa17.37■□□□□ 0.37
DDX55-210ENST00000543016 LRPPRCP42704 1394 aaKnown RBP17.37■□□□□ 0.37
DDX55-210ENST00000543016 ABCC11Q96J66 1382 aa17.37■□□□□ 0.37
DDX55-210ENST00000543016 CPS1P31327 1500 aa17.37■□□□□ 0.37
DDX55-210ENST00000543016 ZNF335Q9H4Z2 1342 aaPredicted RBP17.36■□□□□ 0.37
DDX55-210ENST00000543016 NKTRP30414 1462 aaKnown RBP17.36■□□□□ 0.37
DDX55-210ENST00000543016 NBPF8Q3BBV2 869 aa17.35■□□□□ 0.37
DDX55-210ENST00000543016 NWD1Q149M9 1564 aa17.35■□□□□ 0.37
DDX55-210ENST00000543016 SETD1AO15047 1707 aaKnown RBP17.35■□□□□ 0.37
DDX55-210ENST00000543016 CHD2O14647 1828 aaKnown RBP17.34■□□□□ 0.37
DDX55-210ENST00000543016 TECPR2O15040 1411 aa17.34■□□□□ 0.37
DDX55-210ENST00000543016 TMEM132EQ6IEE7 984 aa17.34■□□□□ 0.37
DDX55-210ENST00000543016 YTHDC2Q9H6S0 1430 aaKnown RBP17.34■□□□□ 0.37
DDX55-210ENST00000543016 ADGRB1O14514 1584 aa17.33■□□□□ 0.37
DDX55-210ENST00000543016 NCOA3Q9Y6Q9 1424 aa17.33■□□□□ 0.36
DDX55-210ENST00000543016 PTCH1Q13635 1447 aa17.32■□□□□ 0.36
DDX55-210ENST00000543016 PTPRUQ92729 1446 aa17.32■□□□□ 0.36
DDX55-210ENST00000543016 ROCK2O75116 1388 aaKnown RBP17.32■□□□□ 0.36
DDX55-210ENST00000543016 GPRASP1Q5JY77 1395 aa17.32■□□□□ 0.36
DDX55-210ENST00000543016 ZEB1P37275 1124 aaPredicted RBP17.32■□□□□ 0.36
DDX55-210ENST00000543016 RALGAPBQ86X10 1494 aa17.31■□□□□ 0.36
DDX55-210ENST00000543016 NBPF1Q3BBV0 1214 aa17.31■□□□□ 0.36
DDX55-210ENST00000543016 PROSER2Q86WR7 435 aaPredicted RBP17.31■□□□□ 0.36
DDX55-210ENST00000543016 LTBP4Q8N2S1 1624 aa17.31■□□□□ 0.36
DDX55-210ENST00000543016 ASXL1Q8IXJ9 1541 aa17.31■□□□□ 0.36
DDX55-210ENST00000543016 XRN1Q8IZH2 1706 aaKnown RBP17.3■□□□□ 0.36
DDX55-210ENST00000543016 FAM135BQ49AJ0 1406 aa17.3■□□□□ 0.36
DDX55-210ENST00000543016 TRPM1Q7Z4N2 1603 aa17.29■□□□□ 0.36
DDX55-210ENST00000543016 STK26Q9P289 416 aa17.29■□□□□ 0.36
DDX55-210ENST00000543016 DLC1Q96QB1 1528 aa17.29■□□□□ 0.36
DDX55-210ENST00000543016 CARD11Q9BXL7 1154 aa17.28■□□□□ 0.36
DDX55-210ENST00000543016 IQSEC2Q5JU85 1478 aa17.27■□□□□ 0.36
DDX55-210ENST00000543016 LRRC7Q96NW7 1537 aa17.26■□□□□ 0.35
DDX55-210ENST00000543016 TRAK1Q9UPV9 953 aa17.26■□□□□ 0.35
DDX55-210ENST00000543016 KNDC1Q76NI1 1749 aa17.26■□□□□ 0.35
DDX55-210ENST00000543016 TMEM94Q12767 1356 aa17.26■□□□□ 0.35
DDX55-210ENST00000543016 EIF3AQ14152 1382 aaKnown RBP17.26■□□□□ 0.35
DDX55-210ENST00000543016 ROBO2Q9HCK4 1378 aa17.26■□□□□ 0.35
DDX55-210ENST00000543016 POGKQ9P215 609 aa17.25■□□□□ 0.35
DDX55-210ENST00000543016 CERKQ8TCT0 537 aa17.24■□□□□ 0.35
DDX55-210ENST00000543016 STRCP1A6NGW2 1772 aa17.24■□□□□ 0.35
DDX55-210ENST00000543016 SLC24A1O60721 1099 aa17.23■□□□□ 0.35
DDX55-210ENST00000543016 C19orf44Q9H6X5 657 aa17.23■□□□□ 0.35
DDX55-210ENST00000543016 PRAM1Q96QH2 718 aa17.22■□□□□ 0.35
DDX55-210ENST00000543016 MSH6P52701 1360 aa17.21■□□□□ 0.35
DDX55-210ENST00000543016 C14orf37Q86TY3 774 aa17.21■□□□□ 0.35
DDX55-210ENST00000543016 WAPLQ7Z5K2 1190 aa17.2■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 72.5 ms