RNA–Protein interactions for RNA: ENST00000542845.3

LIMS1-214, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 5

Gene LIMS1, Length 727 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-214ENST00000542845 C14orf37Q86TY3 774 aa7.75□□□□□ -1.17
LIMS1-214ENST00000542845 SPATA31A6Q5VVP1 1343 aa7.75□□□□□ -1.17
LIMS1-214ENST00000542845 TSPY4P0CV99 314 aa7.74□□□□□ -1.17
LIMS1-214ENST00000542845 TSPY10P0CW01 314 aa7.74□□□□□ -1.17
LIMS1-214ENST00000542845 RBM42Q9BTD8 480 aaKnown RBP7.74□□□□□ -1.17
LIMS1-214ENST00000542845 QTRT2Q9H974 415 aaKnown RBP7.74□□□□□ -1.17
LIMS1-214ENST00000542845 AFF2P51816 1311 aa7.74□□□□□ -1.17
LIMS1-214ENST00000542845 ERVK-7P63135 1459 aa7.74□□□□□ -1.17
LIMS1-214ENST00000542845 LRRC9Q6ZRR7 1453 aa7.74□□□□□ -1.17
LIMS1-214ENST00000542845 MBD5Q9P267 1494 aa7.74□□□□□ -1.17
LIMS1-214ENST00000542845 CEP152O94986 1710 aa7.73□□□□□ -1.17
LIMS1-214ENST00000542845 SP7Q8TDD2 431 aaPredicted RBP7.73□□□□□ -1.17
LIMS1-214ENST00000542845 NCOA2Q15596 1464 aa7.73□□□□□ -1.17
LIMS1-214ENST00000542845 APLP2Q06481 763 aa7.72□□□□□ -1.17
LIMS1-214ENST00000542845 C8orf37Q96NL8 207 aa7.72□□□□□ -1.17
LIMS1-214ENST00000542845 MAP3K1Q13233 1512 aa7.72□□□□□ -1.17
LIMS1-214ENST00000542845 COL16A1Q07092 1604 aaPredicted RBP7.71□□□□□ -1.17
LIMS1-214ENST00000542845 FYCO1Q9BQS8 1478 aa7.71□□□□□ -1.18
LIMS1-214ENST00000542845 ABCC3O15438 1527 aa7.71□□□□□ -1.18
LIMS1-214ENST00000542845 TIAM1Q13009 1591 aa7.71□□□□□ -1.18
LIMS1-214ENST00000542845 SETBP1Q9Y6X0 1596 aa7.71□□□□□ -1.18
LIMS1-214ENST00000542845 CCDC141Q6ZP82 1450 aa7.7□□□□□ -1.18
LIMS1-214ENST00000542845 ARHGAP23Q9P227 1491 aa7.7□□□□□ -1.18
LIMS1-214ENST00000542845 SLIT1O75093 1534 aa7.7□□□□□ -1.18
LIMS1-214ENST00000542845 PRDM15P57071 1507 aaPredicted RBP7.7□□□□□ -1.18
LIMS1-214ENST00000542845 RBM6P78332 1123 aaKnown RBP7.7□□□□□ -1.18
LIMS1-214ENST00000542845 PIK3C2BO00750 1634 aa7.7□□□□□ -1.18
LIMS1-214ENST00000542845 RGS12O14924 1447 aa7.69□□□□□ -1.18
LIMS1-214ENST00000542845 ATF3P18847 181 aa7.69□□□□□ -1.18
LIMS1-214ENST00000542845 RSPH4AQ5TD94 716 aa7.69□□□□□ -1.18
LIMS1-214ENST00000542845 SHPRHQ149N8 1683 aa7.69□□□□□ -1.18
LIMS1-214ENST00000542845 TMEM2Q9UHN6 1383 aa7.69□□□□□ -1.18
LIMS1-214ENST00000542845 FGD6Q6ZV73 1430 aa7.69□□□□□ -1.18
LIMS1-214ENST00000542845 CAMSAP2Q08AD1 1489 aa7.68□□□□□ -1.18
LIMS1-214ENST00000542845 CDK12Q9NYV4 1490 aaPredicted RBP7.68□□□□□ -1.18
LIMS1-214ENST00000542845 NGLY1Q96IV0 654 aa7.68□□□□□ -1.18
LIMS1-214ENST00000542845 PPP1R15AO75807 674 aaPredicted RBP7.67□□□□□ -1.18
LIMS1-214ENST00000542845 ADAMTS2O95450 1211 aa7.67□□□□□ -1.18
LIMS1-214ENST00000542845 IDI1Q13907 227 aa7.67□□□□□ -1.18
LIMS1-214ENST00000542845 ATAD2Q6PL18 1390 aa7.67□□□□□ -1.18
LIMS1-214ENST00000542845 KDM5AP29375 1690 aaKnown RBP7.67□□□□□ -1.18
LIMS1-214ENST00000542845 CADPS2Q86UW7 1296 aa7.66□□□□□ -1.18
LIMS1-214ENST00000542845 TET3O43151 1660 aa7.66□□□□□ -1.18
LIMS1-214ENST00000542845 CHD2O14647 1828 aaKnown RBP7.65□□□□□ -1.18
LIMS1-214ENST00000542845 NKTRP30414 1462 aaKnown RBP7.65□□□□□ -1.18
LIMS1-214ENST00000542845 EFCAB6Q5THR3 1501 aa7.65□□□□□ -1.18
LIMS1-214ENST00000542845 BRINP3Q76B58 766 aa7.65□□□□□ -1.18
LIMS1-214ENST00000542845 DDX17Q92841 729 aaKnown RBP7.65□□□□□ -1.18
LIMS1-214ENST00000542845 C19orf44Q9H6X5 657 aa7.65□□□□□ -1.18
LIMS1-214ENST00000542845 SIPA1L2Q9P2F8 1722 aaPredicted RBP7.64□□□□□ -1.19
LIMS1-214ENST00000542845 SRCAPQ6ZRS2 3230 aa7.64□□□□□ -1.19
LIMS1-214ENST00000542845 LRRC59Q96AG4 307 aaKnown RBP7.64□□□□□ -1.19
LIMS1-214ENST00000542845 AHDC1Q5TGY3 1603 aaPredicted RBP7.63□□□□□ -1.19
LIMS1-214ENST00000542845 NWD1Q149M9 1564 aa7.63□□□□□ -1.19
LIMS1-214ENST00000542845 EHBP1L1Q8N3D4 1523 aa7.63□□□□□ -1.19
LIMS1-214ENST00000542845 CHGAP10645 457 aaKnown RBP7.63□□□□□ -1.19
LIMS1-214ENST00000542845 RRP7BPQ9NSQ0 103 aa7.63□□□□□ -1.19
LIMS1-214ENST00000542845 USP21Q9UK80 565 aa7.63□□□□□ -1.19
LIMS1-214ENST00000542845 MROH1Q8NDA8 1641 aa7.63□□□□□ -1.19
LIMS1-214ENST00000542845 EIF2AK4Q9P2K8 1649 aaKnown RBP7.63□□□□□ -1.19
LIMS1-214ENST00000542845 SAMD1Q6SPF0 538 aaPredicted RBP7.62□□□□□ -1.19
LIMS1-214ENST00000542845 DIP2AQ14689 1571 aa7.62□□□□□ -1.19
LIMS1-214ENST00000542845 CEP162Q5TB80 1403 aa7.61□□□□□ -1.19
LIMS1-214ENST00000542845 KANK1Q14678 1352 aa7.61□□□□□ -1.19
LIMS1-214ENST00000542845 HDGFP51858 240 aaKnown RBP7.61□□□□□ -1.19
LIMS1-214ENST00000542845 CCDC125Q86Z20 511 aa7.61□□□□□ -1.19
LIMS1-214ENST00000542845 TRPC5Q9UL62 973 aaPredicted RBP7.61□□□□□ -1.19
LIMS1-214ENST00000542845 ARHGEF5Q12774 1597 aa7.61□□□□□ -1.19
LIMS1-214ENST00000542845 MYO5BQ9ULV0 1848 aa7.61□□□□□ -1.19
LIMS1-214ENST00000542845 MAST1Q9Y2H9 1570 aa7.6□□□□□ -1.19
LIMS1-214ENST00000542845 PSDA5PKW4 1024 aaPredicted RBP7.6□□□□□ -1.19
LIMS1-214ENST00000542845 SF3B2Q13435 895 aaKnown RBP7.6□□□□□ -1.19
LIMS1-214ENST00000542845 DEFB132Q7Z7B7 95 aa7.6□□□□□ -1.19
LIMS1-214ENST00000542845 ARHGAP31Q2M1Z3 1444 aa7.6□□□□□ -1.19
LIMS1-214ENST00000542845 ATF5Q9Y2D1 282 aaPredicted RBP7.59□□□□□ -1.19
LIMS1-214ENST00000542845 AMOTL2Q9Y2J4 779 aa7.59□□□□□ -1.19
LIMS1-214ENST00000542845 TBX22Q9Y458 520 aa7.59□□□□□ -1.19
LIMS1-214ENST00000542845 DUOX2Q9NRD8 1548 aa7.58□□□□□ -1.2
LIMS1-214ENST00000542845 SETD5Q9C0A6 1442 aa7.58□□□□□ -1.2
LIMS1-214ENST00000542845 RIMS2Q9UQ26 1411 aa7.58□□□□□ -1.2
LIMS1-214ENST00000542845 NCOA3Q9Y6Q9 1424 aa7.58□□□□□ -1.2
LIMS1-214ENST00000542845 PNPLA6Q8IY17 1366 aa7.58□□□□□ -1.2
LIMS1-214ENST00000542845 PLEKHG1Q9ULL1 1385 aa7.58□□□□□ -1.2
LIMS1-214ENST00000542845 ADGRB3O60242 1522 aa7.57□□□□□ -1.2
LIMS1-214ENST00000542845 ASXL1Q8IXJ9 1541 aa7.57□□□□□ -1.2
LIMS1-214ENST00000542845 YY1P25490 414 aa7.57□□□□□ -1.2
LIMS1-214ENST00000542845 SLC52A1Q9NWF4 448 aa7.57□□□□□ -1.2
LIMS1-214ENST00000542845 CHIC2Q9UKJ5 165 aa7.57□□□□□ -1.2
LIMS1-214ENST00000542845 KIF15Q9NS87 1388 aa7.57□□□□□ -1.2
LIMS1-214ENST00000542845 ABCF1Q8NE71 845 aaKnown RBP eCLIP7.56□□□□□ -1.2
LIMS1-214ENST00000542845 GCC2Q8IWJ2 1684 aa7.56□□□□□ -1.2
LIMS1-214ENST00000542845 NHSL1Q5SYE7 1610 aa7.56□□□□□ -1.2
LIMS1-214ENST00000542845 HRCP23327 699 aa7.54□□□□□ -1.2
LIMS1-214ENST00000542845 FNBP4Q8N3X1 1017 aaPredicted RBP7.54□□□□□ -1.2
LIMS1-214ENST00000542845 GJD4Q96KN9 370 aaPredicted RBP7.54□□□□□ -1.2
LIMS1-214ENST00000542845 ATRNO75882 1429 aa7.53□□□□□ -1.2
LIMS1-214ENST00000542845 ZFYVE9O95405 1425 aa7.53□□□□□ -1.2
LIMS1-214ENST00000542845 BLMP54132 1417 aaPredicted RBP7.53□□□□□ -1.2
LIMS1-214ENST00000542845 MST1RQ04912 1400 aa7.53□□□□□ -1.2
LIMS1-214ENST00000542845 LRP5O75197 1615 aa7.53□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms