RNA–Protein interactions for RNA: ENST00000542641.5

YBX3-213, Transcript of Y-box binding protein 3, humanhuman

TSL 4

Gene YBX3, Length 669 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-213ENST00000542641 LMTK3Q96Q04 1460 aa16.8■□□□□ 0.28
YBX3-213ENST00000542641 SPATA31E1Q6ZUB1 1445 aa16.79■□□□□ 0.28
YBX3-213ENST00000542641 TMEM131LA2VDJ0 1609 aa16.79■□□□□ 0.28
YBX3-213ENST00000542641 HSPA2P54652 639 aa16.79■□□□□ 0.28
YBX3-213ENST00000542641 ZNF142P52746 1687 aaPredicted RBP16.78■□□□□ 0.28
YBX3-213ENST00000542641 KIF1BO60333 1816 aa16.78■□□□□ 0.28
YBX3-213ENST00000542641 UBR1Q8IWV7 1749 aa16.78■□□□□ 0.28
YBX3-213ENST00000542641 HDGFP51858 240 aaKnown RBP16.77■□□□□ 0.28
YBX3-213ENST00000542641 TMEM2Q9UHN6 1383 aa16.77■□□□□ 0.27
YBX3-213ENST00000542641 RPGRIP1LQ68CZ1 1315 aa16.76■□□□□ 0.27
YBX3-213ENST00000542641 KDM5AP29375 1690 aaKnown RBP16.76■□□□□ 0.27
YBX3-213ENST00000542641 EID1Q9Y6B2 187 aa16.76■□□□□ 0.27
YBX3-213ENST00000542641 TXNDC2Q86VQ3 553 aa16.75■□□□□ 0.27
YBX3-213ENST00000542641 ANKLE2Q86XL3 938 aa16.75■□□□□ 0.27
YBX3-213ENST00000542641 ABCF1Q8NE71 845 aaKnown RBP eCLIP16.75■□□□□ 0.27
YBX3-213ENST00000542641 NEURL4Q96JN8 1562 aa16.74■□□□□ 0.27
YBX3-213ENST00000542641 RIMS2Q9UQ26 1411 aa16.74■□□□□ 0.27
YBX3-213ENST00000542641 NUTM2DQ5VT03 806 aaPredicted RBP16.74■□□□□ 0.27
YBX3-213ENST00000542641 DCAF11Q8TEB1 546 aa16.74■□□□□ 0.27
YBX3-213ENST00000542641 TONSLQ96HA7 1378 aa16.74■□□□□ 0.27
YBX3-213ENST00000542641 PPP1R15AO75807 674 aaPredicted RBP16.73■□□□□ 0.27
YBX3-213ENST00000542641 LTKP29376 864 aa16.73■□□□□ 0.27
YBX3-213ENST00000542641 L3MBTL2Q969R5 705 aa16.73■□□□□ 0.27
YBX3-213ENST00000542641 SLIT1O75093 1534 aa16.72■□□□□ 0.27
YBX3-213ENST00000542641 VGFO15240 615 aaPredicted RBP16.72■□□□□ 0.27
YBX3-213ENST00000542641 KDM2AQ9Y2K7 1162 aa16.72■□□□□ 0.27
YBX3-213ENST00000542641 MYO5BQ9ULV0 1848 aa16.72■□□□□ 0.27
YBX3-213ENST00000542641 ARHGAP23Q9P227 1491 aa16.72■□□□□ 0.27
YBX3-213ENST00000542641 ZFYVE9O95405 1425 aa16.71■□□□□ 0.27
YBX3-213ENST00000542641 NCKAP5LQ9HCH0 1330 aa16.7■□□□□ 0.26
YBX3-213ENST00000542641 DCAF8L1A6NGE4 600 aa16.7■□□□□ 0.26
YBX3-213ENST00000542641 TIMELESSQ9UNS1 1208 aa16.7■□□□□ 0.26
YBX3-213ENST00000542641 BCANQ96GW7 911 aa16.69■□□□□ 0.26
YBX3-213ENST00000542641 STAC3Q96MF2 364 aa16.69■□□□□ 0.26
YBX3-213ENST00000542641 NEXMIFQ5QGS0 1516 aa16.69■□□□□ 0.26
YBX3-213ENST00000542641 SCAF11Q99590 1463 aaKnown RBP16.68■□□□□ 0.26
YBX3-213ENST00000542641 ADGRF5Q8IZF2 1346 aa16.66■□□□□ 0.26
YBX3-213ENST00000542641 PLEKHG1Q9ULL1 1385 aa16.64■□□□□ 0.26
YBX3-213ENST00000542641 PPLO60437 1756 aa16.64■□□□□ 0.25
YBX3-213ENST00000542641 MYOM2P54296 1465 aa16.63■□□□□ 0.25
YBX3-213ENST00000542641 NPHP4O75161 1426 aaPredicted RBP16.62■□□□□ 0.25
YBX3-213ENST00000542641 IFT172Q9UG01 1749 aa16.62■□□□□ 0.25
YBX3-213ENST00000542641 MED14O60244 1454 aa16.61■□□□□ 0.25
YBX3-213ENST00000542641 SLC26A8Q96RN1 970 aa16.61■□□□□ 0.25
YBX3-213ENST00000542641 NRXN1Q9ULB1 1477 aa16.6■□□□□ 0.25
YBX3-213ENST00000542641 POLR1AO95602 1720 aaPredicted RBP16.59■□□□□ 0.25
YBX3-213ENST00000542641 STRCQ7RTU9 1775 aa16.59■□□□□ 0.25
YBX3-213ENST00000542641 PIK3C2GO75747 1445 aa16.59■□□□□ 0.25
YBX3-213ENST00000542641 CFAP70Q5T0N1 1121 aa16.58■□□□□ 0.24
YBX3-213ENST00000542641 TBX22Q9Y458 520 aa16.58■□□□□ 0.24
YBX3-213ENST00000542641 PRAG1Q86YV5 1406 aa16.58■□□□□ 0.24
YBX3-213ENST00000542641 NBPF8Q3BBV2 869 aa16.57■□□□□ 0.24
YBX3-213ENST00000542641 C14orf93Q9H972 538 aaKnown RBP16.57■□□□□ 0.24
YBX3-213ENST00000542641 SETBP1Q9Y6X0 1596 aa16.56■□□□□ 0.24
YBX3-213ENST00000542641 ADAMTS13Q76LX8 1427 aa16.56■□□□□ 0.24
YBX3-213ENST00000542641 IQGAP1P46940 1657 aa16.56■□□□□ 0.24
YBX3-213ENST00000542641 ALKQ9UM73 1620 aa16.53■□□□□ 0.24
YBX3-213ENST00000542641 NRXN3Q9Y4C0 1643 aa16.53■□□□□ 0.24
YBX3-213ENST00000542641 ZEB1P37275 1124 aaPredicted RBP16.53■□□□□ 0.24
YBX3-213ENST00000542641 TMEM132EQ6IEE7 984 aa16.52■□□□□ 0.24
YBX3-213ENST00000542641 METP08581 1390 aa16.51■□□□□ 0.23
YBX3-213ENST00000542641 NBPF1Q3BBV0 1214 aa16.51■□□□□ 0.23
YBX3-213ENST00000542641 DIP2AQ14689 1571 aa16.51■□□□□ 0.23
YBX3-213ENST00000542641 ROCK2O75116 1388 aaKnown RBP16.49■□□□□ 0.23
YBX3-213ENST00000542641 PIK3R4Q99570 1358 aa16.49■□□□□ 0.23
YBX3-213ENST00000542641 STK26Q9P289 416 aa16.48■□□□□ 0.23
YBX3-213ENST00000542641 AMOTL2Q9Y2J4 779 aa16.48■□□□□ 0.23
YBX3-213ENST00000542641 LAMC1P11047 1609 aa16.48■□□□□ 0.23
YBX3-213ENST00000542641 KCNA6P17658 529 aa16.47■□□□□ 0.23
YBX3-213ENST00000542641 KIAA1210Q9ULL0 1709 aa16.46■□□□□ 0.23
YBX3-213ENST00000542641 CARD11Q9BXL7 1154 aa16.46■□□□□ 0.23
YBX3-213ENST00000542641 RALGAPBQ86X10 1494 aa16.46■□□□□ 0.23
YBX3-213ENST00000542641 ZNF335Q9H4Z2 1342 aaPredicted RBP16.45■□□□□ 0.22
YBX3-213ENST00000542641 PTPRUQ92729 1446 aa16.45■□□□□ 0.22
YBX3-213ENST00000542641 TRPM1Q7Z4N2 1603 aa16.45■□□□□ 0.22
YBX3-213ENST00000542641 SETD1AO15047 1707 aaKnown RBP16.45■□□□□ 0.22
YBX3-213ENST00000542641 LRPPRCP42704 1394 aaKnown RBP16.45■□□□□ 0.22
YBX3-213ENST00000542641 ADGRB1O14514 1584 aa16.45■□□□□ 0.22
YBX3-213ENST00000542641 ASXL1Q8IXJ9 1541 aa16.45■□□□□ 0.22
YBX3-213ENST00000542641 YTHDC2Q9H6S0 1430 aaKnown RBP16.45■□□□□ 0.22
YBX3-213ENST00000542641 TRAK1Q9UPV9 953 aa16.44■□□□□ 0.22
YBX3-213ENST00000542641 ABCC11Q96J66 1382 aa16.43■□□□□ 0.22
YBX3-213ENST00000542641 GPRASP1Q5JY77 1395 aa16.42■□□□□ 0.22
YBX3-213ENST00000542641 PROSER2Q86WR7 435 aaPredicted RBP16.4■□□□□ 0.22
YBX3-213ENST00000542641 CHD2O14647 1828 aaKnown RBP16.4■□□□□ 0.22
YBX3-213ENST00000542641 TECPR2O15040 1411 aa16.39■□□□□ 0.21
YBX3-213ENST00000542641 SIRT1Q96EB6 747 aa16.39■□□□□ 0.21
YBX3-213ENST00000542641 POGKQ9P215 609 aa16.39■□□□□ 0.21
YBX3-213ENST00000542641 ROBO2Q9HCK4 1378 aa16.38■□□□□ 0.21
YBX3-213ENST00000542641 NWD1Q149M9 1564 aa16.38■□□□□ 0.21
YBX3-213ENST00000542641 WAPLQ7Z5K2 1190 aa16.38■□□□□ 0.21
YBX3-213ENST00000542641 PRAM1Q96QH2 718 aa16.38■□□□□ 0.21
YBX3-213ENST00000542641 NKTRP30414 1462 aaKnown RBP16.37■□□□□ 0.21
YBX3-213ENST00000542641 XRN1Q8IZH2 1706 aaKnown RBP16.37■□□□□ 0.21
YBX3-213ENST00000542641 RBM33Q96EV2 1170 aaKnown RBP16.37■□□□□ 0.21
YBX3-213ENST00000542641 PTCH1Q13635 1447 aa16.36■□□□□ 0.21
YBX3-213ENST00000542641 SAFB2Q14151 953 aaKnown RBP eCLIP16.36■□□□□ 0.21
YBX3-213ENST00000542641 EIF3AQ14152 1382 aaKnown RBP16.36■□□□□ 0.21
YBX3-213ENST00000542641 FAM135BQ49AJ0 1406 aa16.36■□□□□ 0.21
YBX3-213ENST00000542641 CPS1P31327 1500 aa16.35■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms