RNA–Protein interactions for RNA: ENST00000541169.1

VPS33A-205, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 4

Gene VPS33A, Length 594 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-205ENST00000541169 RPGRIP1LQ68CZ1 1315 aa27.47■■□□□ 1.99
VPS33A-205ENST00000541169 ZFYVE9O95405 1425 aa27.46■■□□□ 1.99
VPS33A-205ENST00000541169 RIMS2Q9UQ26 1411 aa27.45■■□□□ 1.98
VPS33A-205ENST00000541169 NPHP4O75161 1426 aaPredicted RBP27.44■■□□□ 1.98
VPS33A-205ENST00000541169 ZNF326Q5BKZ1 582 aaKnown RBP27.44■■□□□ 1.98
VPS33A-205ENST00000541169 IQGAP1P46940 1657 aa27.43■■□□□ 1.98
VPS33A-205ENST00000541169 PPP1R15AO75807 674 aaPredicted RBP27.42■■□□□ 1.98
VPS33A-205ENST00000541169 LTKP29376 864 aa27.42■■□□□ 1.98
VPS33A-205ENST00000541169 SPATA31E1Q6ZUB1 1445 aa27.39■■□□□ 1.97
VPS33A-205ENST00000541169 DHX57Q6P158 1386 aaKnown RBP27.38■■□□□ 1.97
VPS33A-205ENST00000541169 PLEKHG1Q9ULL1 1385 aa27.38■■□□□ 1.97
VPS33A-205ENST00000541169 VGFO15240 615 aaPredicted RBP27.38■■□□□ 1.97
VPS33A-205ENST00000541169 STAC3Q96MF2 364 aa27.36■■□□□ 1.97
VPS33A-205ENST00000541169 NEXMIFQ5QGS0 1516 aa27.35■■□□□ 1.97
VPS33A-205ENST00000541169 PPLO60437 1756 aa27.31■■□□□ 1.96
VPS33A-205ENST00000541169 BCANQ96GW7 911 aa27.3■■□□□ 1.96
VPS33A-205ENST00000541169 DIP2AQ14689 1571 aa27.3■■□□□ 1.96
VPS33A-205ENST00000541169 RGL3Q3MIN7 710 aa27.29■■□□□ 1.96
VPS33A-205ENST00000541169 TBX22Q9Y458 520 aa27.27■■□□□ 1.96
VPS33A-205ENST00000541169 SETBP1Q9Y6X0 1596 aa27.26■■□□□ 1.96
VPS33A-205ENST00000541169 IFT172Q9UG01 1749 aa27.26■■□□□ 1.95
VPS33A-205ENST00000541169 CLSPNQ9HAW4 1339 aa27.24■■□□□ 1.95
VPS33A-205ENST00000541169 PIK3R4Q99570 1358 aa27.23■■□□□ 1.95
VPS33A-205ENST00000541169 MYOM2P54296 1465 aa27.22■■□□□ 1.95
VPS33A-205ENST00000541169 NUTM2DQ5VT03 806 aaPredicted RBP27.22■■□□□ 1.95
VPS33A-205ENST00000541169 ADAMTS13Q76LX8 1427 aa27.19■■□□□ 1.94
VPS33A-205ENST00000541169 SLC26A8Q96RN1 970 aa27.19■■□□□ 1.94
VPS33A-205ENST00000541169 CPS1P31327 1500 aa27.19■■□□□ 1.94
VPS33A-205ENST00000541169 NRXN3Q9Y4C0 1643 aa27.16■■□□□ 1.94
VPS33A-205ENST00000541169 ZNF335Q9H4Z2 1342 aaPredicted RBP27.16■■□□□ 1.94
VPS33A-205ENST00000541169 NRXN1Q9ULB1 1477 aa27.15■■□□□ 1.94
VPS33A-205ENST00000541169 KCNA6P17658 529 aa27.15■■□□□ 1.94
VPS33A-205ENST00000541169 DCAF11Q8TEB1 546 aa27.14■■□□□ 1.94
VPS33A-205ENST00000541169 LTBP4Q8N2S1 1624 aa27.14■■□□□ 1.94
VPS33A-205ENST00000541169 PIK3C2GO75747 1445 aa27.13■■□□□ 1.93
VPS33A-205ENST00000541169 ADGRF5Q8IZF2 1346 aa27.12■■□□□ 1.93
VPS33A-205ENST00000541169 IQSEC2Q5JU85 1478 aa27.12■■□□□ 1.93
VPS33A-205ENST00000541169 LAMC1P11047 1609 aa27.12■■□□□ 1.93
VPS33A-205ENST00000541169 CHD2O14647 1828 aaKnown RBP27.11■■□□□ 1.93
VPS33A-205ENST00000541169 NWD1Q149M9 1564 aa27.1■■□□□ 1.93
VPS33A-205ENST00000541169 ALKQ9UM73 1620 aa27.1■■□□□ 1.93
VPS33A-205ENST00000541169 SIN3AQ96ST3 1273 aa27.1■■□□□ 1.93
VPS33A-205ENST00000541169 NKTRP30414 1462 aaKnown RBP27.1■■□□□ 1.93
VPS33A-205ENST00000541169 NEUROD1Q13562 356 aa27.09■■□□□ 1.93
VPS33A-205ENST00000541169 CERKQ8TCT0 537 aa27.06■■□□□ 1.92
VPS33A-205ENST00000541169 C14orf93Q9H972 538 aaKnown RBP27.05■■□□□ 1.92
VPS33A-205ENST00000541169 KDM2AQ9Y2K7 1162 aa27.05■■□□□ 1.92
VPS33A-205ENST00000541169 SETD1AO15047 1707 aaKnown RBP27.04■■□□□ 1.92
VPS33A-205ENST00000541169 CCER1Q8TC90 406 aaPredicted RBP27.04■■□□□ 1.92
VPS33A-205ENST00000541169 TIMELESSQ9UNS1 1208 aa27.04■■□□□ 1.92
VPS33A-205ENST00000541169 TONSLQ96HA7 1378 aa27.04■■□□□ 1.92
VPS33A-205ENST00000541169 STRCP1A6NGW2 1772 aa27.02■■□□□ 1.92
VPS33A-205ENST00000541169 METP08581 1390 aa27.02■■□□□ 1.92
VPS33A-205ENST00000541169 L3MBTL2Q969R5 705 aa27.02■■□□□ 1.92
VPS33A-205ENST00000541169 SENP3Q9H4L4 574 aaPredicted RBP27.02■■□□□ 1.92
VPS33A-205ENST00000541169 NCOA3Q9Y6Q9 1424 aa27.01■■□□□ 1.91
VPS33A-205ENST00000541169 PRAG1Q86YV5 1406 aa27■■□□□ 1.91
VPS33A-205ENST00000541169 AMOTL2Q9Y2J4 779 aa27■■□□□ 1.91
VPS33A-205ENST00000541169 LRRC7Q96NW7 1537 aa26.99■■□□□ 1.91
VPS33A-205ENST00000541169 XRN1Q8IZH2 1706 aaKnown RBP26.99■■□□□ 1.91
VPS33A-205ENST00000541169 PROSER2Q86WR7 435 aaPredicted RBP26.98■■□□□ 1.91
VPS33A-205ENST00000541169 KIAA1210Q9ULL0 1709 aa26.98■■□□□ 1.91
VPS33A-205ENST00000541169 PTPRUQ92729 1446 aa26.95■■□□□ 1.9
VPS33A-205ENST00000541169 PTCH1Q13635 1447 aa26.94■■□□□ 1.9
VPS33A-205ENST00000541169 CFAP70Q5T0N1 1121 aa26.94■■□□□ 1.9
VPS33A-205ENST00000541169 LRPPRCP42704 1394 aaKnown RBP26.94■■□□□ 1.9
VPS33A-205ENST00000541169 ABCC11Q96J66 1382 aa26.93■■□□□ 1.9
VPS33A-205ENST00000541169 TECPR2O15040 1411 aa26.92■■□□□ 1.9
VPS33A-205ENST00000541169 SIRT1Q96EB6 747 aa26.91■■□□□ 1.9
VPS33A-205ENST00000541169 TMEM94Q12767 1356 aa26.91■■□□□ 1.9
VPS33A-205ENST00000541169 KNDC1Q76NI1 1749 aa26.9■■□□□ 1.9
VPS33A-205ENST00000541169 YTHDC2Q9H6S0 1430 aaKnown RBP26.9■■□□□ 1.9
VPS33A-205ENST00000541169 ADGRB1O14514 1584 aa26.88■■□□□ 1.89
VPS33A-205ENST00000541169 ASXL1Q8IXJ9 1541 aa26.87■■□□□ 1.89
VPS33A-205ENST00000541169 TMEM132EQ6IEE7 984 aa26.86■■□□□ 1.89
VPS33A-205ENST00000541169 XIRP1Q702N8 1843 aaKnown RBP26.86■■□□□ 1.89
VPS33A-205ENST00000541169 MSH6P52701 1360 aa26.85■■□□□ 1.89
VPS33A-205ENST00000541169 FAM135BQ49AJ0 1406 aa26.85■■□□□ 1.89
VPS33A-205ENST00000541169 TOM1O60784 492 aa26.85■■□□□ 1.89
VPS33A-205ENST00000541169 DLC1Q96QB1 1528 aa26.84■■□□□ 1.89
VPS33A-205ENST00000541169 C19orf44Q9H6X5 657 aa26.83■■□□□ 1.89
VPS33A-205ENST00000541169 C14orf37Q86TY3 774 aa26.82■■□□□ 1.88
VPS33A-205ENST00000541169 DCCP43146 1447 aa26.82■■□□□ 1.88
VPS33A-205ENST00000541169 STK26Q9P289 416 aa26.81■■□□□ 1.88
VPS33A-205ENST00000541169 ROBO2Q9HCK4 1378 aa26.81■■□□□ 1.88
VPS33A-205ENST00000541169 TRPM1Q7Z4N2 1603 aa26.8■■□□□ 1.88
VPS33A-205ENST00000541169 FBXO41Q8TF61 875 aa26.8■■□□□ 1.88
VPS33A-205ENST00000541169 CADPS2Q86UW7 1296 aa26.78■■□□□ 1.88
VPS33A-205ENST00000541169 ADGRL3Q9HAR2 1447 aa26.77■■□□□ 1.88
VPS33A-205ENST00000541169 ROCK2O75116 1388 aaKnown RBP26.76■■□□□ 1.87
VPS33A-205ENST00000541169 UBAP1LF5GYI3 381 aa26.76■■□□□ 1.87
VPS33A-205ENST00000541169 ATF3P18847 181 aa26.75■■□□□ 1.87
VPS33A-205ENST00000541169 RALGAPBQ86X10 1494 aa26.74■■□□□ 1.87
VPS33A-205ENST00000541169 GPRASP1Q5JY77 1395 aa26.73■■□□□ 1.87
VPS33A-205ENST00000541169 NBPF1Q3BBV0 1214 aa26.73■■□□□ 1.87
VPS33A-205ENST00000541169 POGKQ9P215 609 aa26.73■■□□□ 1.87
VPS33A-205ENST00000541169 SIPA1L2Q9P2F8 1722 aaPredicted RBP26.73■■□□□ 1.87
VPS33A-205ENST00000541169 NBPF8Q3BBV2 869 aa26.72■■□□□ 1.87
VPS33A-205ENST00000541169 RBM33Q96EV2 1170 aaKnown RBP26.72■■□□□ 1.87
VPS33A-205ENST00000541169 TRAK1Q9UPV9 953 aa26.72■■□□□ 1.87
Retrieved 100 of 20,778 RNA–protein pairs in 203.4 ms