RNA–Protein interactions for RNA: ENST00000540338.5

CLIP1-213, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLIP1, Length 4,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-213ENST00000540338 EIF2AK4Q9P2K8 1649 aaKnown RBP14.06□□□□□ -0.16
CLIP1-213ENST00000540338 ATP7AQ04656 1500 aa14.05□□□□□ -0.16
CLIP1-213ENST00000540338 SHROOM2Q13796 1616 aa14.05□□□□□ -0.16
CLIP1-213ENST00000540338 SLC52A1Q9NWF4 448 aa14.05□□□□□ -0.16
CLIP1-213ENST00000540338 KDM5CP41229 1560 aa14.05□□□□□ -0.16
CLIP1-213ENST00000540338 PLA2R1Q13018 1463 aa14.04□□□□□ -0.16
CLIP1-213ENST00000540338 HDGFL2Q7Z4V5 671 aaPredicted RBP14.04□□□□□ -0.16
CLIP1-213ENST00000540338 CGNL1Q0VF96 1302 aa14.04□□□□□ -0.16
CLIP1-213ENST00000540338 RTL5Q5HYW3 569 aaPredicted RBP14.04□□□□□ -0.16
CLIP1-213ENST00000540338 ANP32EQ9BTT0 268 aa14.04□□□□□ -0.16
CLIP1-213ENST00000540338 TERF2IPQ9NYB0 399 aa14.04□□□□□ -0.16
CLIP1-213ENST00000540338 U2SURPO15042 1029 aaKnown RBP14.04□□□□□ -0.16
CLIP1-213ENST00000540338 PER1O15534 1290 aaPredicted RBP14.04□□□□□ -0.16
CLIP1-213ENST00000540338 CDCA7LQ96GN5 454 aa14.04□□□□□ -0.16
CLIP1-213ENST00000540338 PLXNC1O60486 1568 aa14.03□□□□□ -0.16
CLIP1-213ENST00000540338 CLASP1Q7Z460 1538 aa14.03□□□□□ -0.16
CLIP1-213ENST00000540338 PARD3Q8TEW0 1356 aa14.03□□□□□ -0.16
CLIP1-213ENST00000540338 MAPK8IP3Q9UPT6 1336 aa14.03□□□□□ -0.16
CLIP1-213ENST00000540338 APAF1O14727 1248 aa14.03□□□□□ -0.16
CLIP1-213ENST00000540338 EXOC6Q8TAG9 804 aa14.03□□□□□ -0.16
CLIP1-213ENST00000540338 PPM1GO15355 546 aaPredicted RBP14.02□□□□□ -0.16
CLIP1-213ENST00000540338 U2AF1L5P0DN76 240 aaPredicted RBP14.02□□□□□ -0.17
CLIP1-213ENST00000540338 U2AF1Q01081 240 aaKnown RBP eCLIP14.02□□□□□ -0.17
CLIP1-213ENST00000540338 ZBTB47Q9UFB7 747 aaPredicted RBP14.02□□□□□ -0.17
CLIP1-213ENST00000540338 COL17A1Q9UMD9 1497 aaPredicted RBP14.01□□□□□ -0.17
CLIP1-213ENST00000540338 NGEFQ8N5V2 710 aa14.01□□□□□ -0.17
CLIP1-213ENST00000540338 PLIN1O60240 522 aa14□□□□□ -0.17
CLIP1-213ENST00000540338 SLC12A5Q9H2X9 1139 aa14□□□□□ -0.17
CLIP1-213ENST00000540338 NOS1P29475 1434 aa14□□□□□ -0.17
CLIP1-213ENST00000540338 ARAP3Q8WWN8 1544 aa13.99□□□□□ -0.17
CLIP1-213ENST00000540338 MINK1Q8N4C8 1332 aaPredicted RBP13.99□□□□□ -0.17
CLIP1-213ENST00000540338 ATP10AO60312 1499 aa13.99□□□□□ -0.17
CLIP1-213ENST00000540338 FRAT1Q92837 279 aaPredicted RBP13.99□□□□□ -0.17
CLIP1-213ENST00000540338 PNNQ9H307 717 aaKnown RBP13.99□□□□□ -0.17
CLIP1-213ENST00000540338 C14orf93Q9H972 538 aaKnown RBP13.99□□□□□ -0.17
CLIP1-213ENST00000540338 UNC13BO14795 1591 aa13.99□□□□□ -0.17
CLIP1-213ENST00000540338 IQGAP3Q86VI3 1631 aa13.98□□□□□ -0.17
CLIP1-213ENST00000540338 E9PSI1 815 aa13.98□□□□□ -0.17
CLIP1-213ENST00000540338 TCERG1O14776 1098 aaKnown RBP13.98□□□□□ -0.17
CLIP1-213ENST00000540338 CABP2Q9NPB3 220 aa13.97□□□□□ -0.17
CLIP1-213ENST00000540338 IDI1Q13907 227 aa13.97□□□□□ -0.17
CLIP1-213ENST00000540338 AMER1Q5JTC6 1135 aaPredicted RBP13.96□□□□□ -0.17
CLIP1-213ENST00000540338 CRBNQ96SW2 442 aa13.95□□□□□ -0.18
CLIP1-213ENST00000540338 ZFYVE16Q7Z3T8 1539 aa13.95□□□□□ -0.18
CLIP1-213ENST00000540338 LRPPRCP42704 1394 aaKnown RBP13.95□□□□□ -0.18
CLIP1-213ENST00000540338 PTPRTO14522 1441 aa13.94□□□□□ -0.18
CLIP1-213ENST00000540338 MYH16Q9H6N6 1097 aa13.94□□□□□ -0.18
CLIP1-213ENST00000540338 RRP7AQ9Y3A4 280 aaKnown RBP13.94□□□□□ -0.18
CLIP1-213ENST00000540338 BCORL1Q5H9F3 1711 aa13.93□□□□□ -0.18
CLIP1-213ENST00000540338 MTHFSP49914 203 aa13.93□□□□□ -0.18
CLIP1-213ENST00000540338 POGZQ7Z3K3 1410 aa13.93□□□□□ -0.18
CLIP1-213ENST00000540338 TRPM2O94759 1503 aa13.93□□□□□ -0.18
CLIP1-213ENST00000540338 RUNDC1Q96C34 613 aa13.93□□□□□ -0.18
CLIP1-213ENST00000540338 FTSJ3Q8IY81 847 aaKnown RBP13.92□□□□□ -0.18
CLIP1-213ENST00000540338 FANCIQ9NVI1 1328 aa13.92□□□□□ -0.18
CLIP1-213ENST00000540338 PRAM1Q96QH2 718 aa13.91□□□□□ -0.18
CLIP1-213ENST00000540338 MS4A1P11836 297 aa13.91□□□□□ -0.18
CLIP1-213ENST00000540338 RGS3P49796 1198 aa13.91□□□□□ -0.18
CLIP1-213ENST00000540338 ABCF1Q8NE71 845 aaKnown RBP eCLIP13.91□□□□□ -0.18
CLIP1-213ENST00000540338 NSD3Q9BZ95 1437 aa13.9□□□□□ -0.18
CLIP1-213ENST00000540338 NOP58Q9Y2X3 529 aaKnown RBP13.9□□□□□ -0.18
CLIP1-213ENST00000540338 SUGP2Q8IX01 1082 aaKnown RBP eCLIP13.9□□□□□ -0.18
CLIP1-213ENST00000540338 ASXL1Q8IXJ9 1541 aa13.9□□□□□ -0.19
CLIP1-213ENST00000540338 GGNBP2Q9H3C7 697 aa13.89□□□□□ -0.19
CLIP1-213ENST00000540338 FBXO31Q5XUX0 539 aaPredicted RBP13.89□□□□□ -0.19
CLIP1-213ENST00000540338 LAS1LQ9Y4W2 734 aaKnown RBP13.89□□□□□ -0.19
CLIP1-213ENST00000540338 PRDM15P57071 1507 aaPredicted RBP13.89□□□□□ -0.19
CLIP1-213ENST00000540338 MAGI2Q86UL8 1455 aa13.88□□□□□ -0.19
CLIP1-213ENST00000540338 NEO1Q92859 1461 aa13.88□□□□□ -0.19
CLIP1-213ENST00000540338 UPF2Q9HAU5 1272 aaKnown RBP13.88□□□□□ -0.19
CLIP1-213ENST00000540338 DDRGK1Q96HY6 314 aa13.88□□□□□ -0.19
CLIP1-213ENST00000540338 TRPM1Q7Z4N2 1603 aa13.87□□□□□ -0.19
CLIP1-213ENST00000540338 TCP11L2Q8N4U5 519 aa13.87□□□□□ -0.19
CLIP1-213ENST00000540338 PPP6R1Q9UPN7 881 aa13.87□□□□□ -0.19
CLIP1-213ENST00000540338 MLH3Q9UHC1 1453 aa13.87□□□□□ -0.19
CLIP1-213ENST00000540338 CENPQQ7L2Z9 268 aaPredicted RBP13.86□□□□□ -0.19
CLIP1-213ENST00000540338 NPATQ14207 1427 aa13.86□□□□□ -0.19
CLIP1-213ENST00000540338 ABCA9Q8IUA7 1624 aa13.86□□□□□ -0.19
CLIP1-213ENST00000540338 NBR1Q14596 966 aa13.86□□□□□ -0.19
CLIP1-213ENST00000540338 SLFN5Q08AF3 891 aa13.85□□□□□ -0.19
CLIP1-213ENST00000540338 EID1Q9Y6B2 187 aa13.85□□□□□ -0.19
CLIP1-213ENST00000540338 TET3O43151 1660 aa13.85□□□□□ -0.19
CLIP1-213ENST00000540338 NPC1L1Q9UHC9 1359 aa13.85□□□□□ -0.19
CLIP1-213ENST00000540338 ATAD2Q6PL18 1390 aa13.85□□□□□ -0.19
CLIP1-213ENST00000540338 CARD14Q9BXL6 1004 aa13.85□□□□□ -0.19
CLIP1-213ENST00000540338 CFAP74Q9C0B2 1584 aa13.85□□□□□ -0.19
CLIP1-213ENST00000540338 TRHP20396 242 aaPredicted RBP13.84□□□□□ -0.19
CLIP1-213ENST00000540338 CDK19Q9BWU1 502 aa13.84□□□□□ -0.19
CLIP1-213ENST00000540338 DIAPH1O60610 1272 aaKnown RBP13.84□□□□□ -0.19
CLIP1-213ENST00000540338 PIK3C2GO75747 1445 aa13.83□□□□□ -0.2
CLIP1-213ENST00000540338 PDE4AP27815 886 aa13.83□□□□□ -0.2
CLIP1-213ENST00000540338 INSRP06213 1382 aa13.83□□□□□ -0.2
CLIP1-213ENST00000540338 UGGT1Q9NYU2 1555 aa13.82□□□□□ -0.2
CLIP1-213ENST00000540338 DUSP27Q5VZP5 1158 aa13.82□□□□□ -0.2
CLIP1-213ENST00000540338 PUS7Q96PZ0 661 aaKnown RBP13.82□□□□□ -0.2
CLIP1-213ENST00000540338 CABP1Q9NZU7 370 aa13.82□□□□□ -0.2
CLIP1-213ENST00000540338 RNF123Q5XPI4 1314 aa13.82□□□□□ -0.2
CLIP1-213ENST00000540338 MYOM2P54296 1465 aa13.82□□□□□ -0.2
CLIP1-213ENST00000540338 CALD1Q05682 793 aaKnown RBP13.82□□□□□ -0.2
CLIP1-213ENST00000540338 IPO9Q96P70 1041 aaKnown RBP13.82□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms