RNA–Protein interactions for RNA: ENST00000539661.5

RAB40C-205, Transcript of RAB40C, member RAS oncogene family, humanhuman

APPRIS P1 TSL 3 BASIC

Gene RAB40C, Length 2,609 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAB40C-205ENST00000539661 WDR7Q9Y4E6 1490 aa22.81■■□□□ 1.24
RAB40C-205ENST00000539661 IQGAP3Q86VI3 1631 aa22.81■■□□□ 1.24
RAB40C-205ENST00000539661 SLFN5Q08AF3 891 aa22.8■■□□□ 1.24
RAB40C-205ENST00000539661 TRMT2AQ8IZ69 625 aaKnown RBP22.8■■□□□ 1.24
RAB40C-205ENST00000539661 RGL3Q3MIN7 710 aa22.8■■□□□ 1.24
RAB40C-205ENST00000539661 SAMD9LQ8IVG5 1584 aa22.8■■□□□ 1.24
RAB40C-205ENST00000539661 PIK3C2GO75747 1445 aa22.79■■□□□ 1.24
RAB40C-205ENST00000539661 UBE2Q2Q8WVN8 375 aa22.78■■□□□ 1.24
RAB40C-205ENST00000539661 PREX2Q70Z35 1606 aa22.78■■□□□ 1.24
RAB40C-205ENST00000539661 MAGI2Q86UL8 1455 aa22.78■■□□□ 1.24
RAB40C-205ENST00000539661 KNSTRNQ9Y448 316 aa22.78■■□□□ 1.24
RAB40C-205ENST00000539661 SYNMO15061 1565 aa22.77■■□□□ 1.24
RAB40C-205ENST00000539661 RSPH6AQ9H0K4 717 aa22.77■■□□□ 1.24
RAB40C-205ENST00000539661 ABCC2Q92887 1545 aa22.77■■□□□ 1.23
RAB40C-205ENST00000539661 NKTRP30414 1462 aaKnown RBP22.76■■□□□ 1.23
RAB40C-205ENST00000539661 RGS3P49796 1198 aa22.76■■□□□ 1.23
RAB40C-205ENST00000539661 CDC42BPBQ9Y5S2 1711 aa22.75■■□□□ 1.23
RAB40C-205ENST00000539661 NPC1L1Q9UHC9 1359 aa22.75■■□□□ 1.23
RAB40C-205ENST00000539661 AMER1Q5JTC6 1135 aaPredicted RBP22.74■■□□□ 1.23
RAB40C-205ENST00000539661 IQGAP1P46940 1657 aa22.73■■□□□ 1.23
RAB40C-205ENST00000539661 ASXL1Q8IXJ9 1541 aa22.73■■□□□ 1.23
RAB40C-205ENST00000539661 NINLQ9Y2I6 1382 aa22.73■■□□□ 1.23
RAB40C-205ENST00000539661 CDCA8Q53HL2 280 aa22.73■■□□□ 1.23
RAB40C-205ENST00000539661 PLXNC1O60486 1568 aa22.72■■□□□ 1.23
RAB40C-205ENST00000539661 NGEFQ8N5V2 710 aa22.72■■□□□ 1.23
RAB40C-205ENST00000539661 MAPK8IP3Q9UPT6 1336 aa22.71■■□□□ 1.23
RAB40C-205ENST00000539661 GRWD1Q9BQ67 446 aaKnown RBP eCLIP22.71■■□□□ 1.23
RAB40C-205ENST00000539661 BECN1Q14457 450 aa22.71■■□□□ 1.23
RAB40C-205ENST00000539661 USP19O94966 1318 aa22.71■■□□□ 1.23
RAB40C-205ENST00000539661 CGNL1Q0VF96 1302 aa22.7■■□□□ 1.22
RAB40C-205ENST00000539661 SHROOM2Q13796 1616 aa22.69■■□□□ 1.22
RAB40C-205ENST00000539661 E9PSI1 815 aa22.68■■□□□ 1.22
RAB40C-205ENST00000539661 PDE3AQ14432 1141 aa22.68■■□□□ 1.22
RAB40C-205ENST00000539661 MADDQ8WXG6 1647 aa22.66■■□□□ 1.22
RAB40C-205ENST00000539661 ZMYM3Q14202 1370 aa22.66■■□□□ 1.22
RAB40C-205ENST00000539661 L1TD1Q5T7N2 865 aaKnown RBP22.65■■□□□ 1.22
RAB40C-205ENST00000539661 SYCP2Q9BX26 1530 aa22.65■■□□□ 1.22
RAB40C-205ENST00000539661 TTC37Q6PGP7 1564 aa22.64■■□□□ 1.21
RAB40C-205ENST00000539661 DUOX2Q9NRD8 1548 aa22.64■■□□□ 1.21
RAB40C-205ENST00000539661 EIF5BO60841 1220 aaKnown RBP22.63■■□□□ 1.21
RAB40C-205ENST00000539661 MYOM1P52179 1685 aa22.63■■□□□ 1.21
RAB40C-205ENST00000539661 IGHDP01880 384 aa22.62■■□□□ 1.21
RAB40C-205ENST00000539661 AAMPQ13685 434 aa22.62■■□□□ 1.21
RAB40C-205ENST00000539661 STAC3Q96MF2 364 aa22.62■■□□□ 1.21
RAB40C-205ENST00000539661 SCAPERQ9BY12 1400 aa22.62■■□□□ 1.21
RAB40C-205ENST00000539661 SCAF11Q99590 1463 aaKnown RBP22.62■■□□□ 1.21
RAB40C-205ENST00000539661 NLRP1Q9C000 1473 aa22.62■■□□□ 1.21
RAB40C-205ENST00000539661 BCAR3O75815 825 aa22.61■■□□□ 1.21
RAB40C-205ENST00000539661 CLUAP1Q96AJ1 413 aa22.6■■□□□ 1.21
RAB40C-205ENST00000539661 SPINK5Q9NQ38 1064 aaPredicted RBP22.6■■□□□ 1.21
RAB40C-205ENST00000539661 APAF1O14727 1248 aa22.59■■□□□ 1.21
RAB40C-205ENST00000539661 POGKQ9P215 609 aa22.59■■□□□ 1.21
RAB40C-205ENST00000539661 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP22.58■■□□□ 1.212e-6■■■□□ 16.1
RAB40C-205ENST00000539661 SPHKAPQ2M3C7 1700 aa22.58■■□□□ 1.21
RAB40C-205ENST00000539661 ARHGAP5Q13017 1502 aa22.58■■□□□ 1.2
RAB40C-205ENST00000539661 ANTXR1Q9H6X2 564 aa22.57■■□□□ 1.2
RAB40C-205ENST00000539661 CCDC146Q8IYE0 955 aa22.56■■□□□ 1.2
RAB40C-205ENST00000539661 KDM5AP29375 1690 aaKnown RBP22.56■■□□□ 1.2
RAB40C-205ENST00000539661 UPF2Q9HAU5 1272 aaKnown RBP22.55■■□□□ 1.2
RAB40C-205ENST00000539661 CENPJQ9HC77 1338 aaPredicted RBP22.55■■□□□ 1.2
RAB40C-205ENST00000539661 SLC24A1O60721 1099 aa22.54■■□□□ 1.2
RAB40C-205ENST00000539661 SEC24BO95487 1268 aa22.54■■□□□ 1.2
RAB40C-205ENST00000539661 AFAP1Q8N556 730 aa22.54■■□□□ 1.2
RAB40C-205ENST00000539661 PMFBP1Q8TBY8 1022 aa22.54■■□□□ 1.2
RAB40C-205ENST00000539661 KIAA1210Q9ULL0 1709 aa22.52■■□□□ 1.2
RAB40C-205ENST00000539661 CEP152O94986 1710 aa22.52■■□□□ 1.2
RAB40C-205ENST00000539661 TBC1D32Q96NH3 1257 aa22.51■■□□□ 1.19
RAB40C-205ENST00000539661 TRPM2O94759 1503 aa22.51■■□□□ 1.19
RAB40C-205ENST00000539661 CANXP27824 592 aaKnown RBP22.49■■□□□ 1.19
RAB40C-205ENST00000539661 SLKQ9H2G2 1235 aaPredicted RBP22.49■■□□□ 1.19
RAB40C-205ENST00000539661 COG6Q9Y2V7 657 aa22.48■■□□□ 1.19
RAB40C-205ENST00000539661 POLR3AO14802 1390 aaPredicted RBP22.47■■□□□ 1.19
RAB40C-205ENST00000539661 RRAGDQ9NQL2 400 aaPredicted RBP22.47■■□□□ 1.19
RAB40C-205ENST00000539661 PANK1Q8TE04 598 aa22.46■■□□□ 1.19
RAB40C-205ENST00000539661 WWC1Q8IX03 1113 aa22.45■■□□□ 1.19
RAB40C-205ENST00000539661 DMRT2Q9Y5R5 561 aa22.45■■□□□ 1.19
RAB40C-205ENST00000539661 TBC1D2Q9BYX2 928 aa22.44■■□□□ 1.18
RAB40C-205ENST00000539661 ZCCHC11Q5TAX3 1644 aaKnown RBP22.44■■□□□ 1.18
RAB40C-205ENST00000539661 FSD2A1L4K1 749 aa22.44■■□□□ 1.18
RAB40C-205ENST00000539661 PTPRTO14522 1441 aa22.43■■□□□ 1.18
RAB40C-205ENST00000539661 TRAPPC8Q9Y2L5 1435 aa22.43■■□□□ 1.18
RAB40C-205ENST00000539661 NEURL4Q96JN8 1562 aa22.43■■□□□ 1.18
RAB40C-205ENST00000539661 GOLGA6L3A6NEY3 463 aa22.43■■□□□ 1.18
RAB40C-205ENST00000539661 UHRF1BP1LA0JNW5 1464 aa22.41■■□□□ 1.18
RAB40C-205ENST00000539661 RARSP54136 660 aaKnown RBP22.41■■□□□ 1.18
RAB40C-205ENST00000539661 MCM4P33991 863 aa22.4■■□□□ 1.18
RAB40C-205ENST00000539661 RWDD1Q9H446 243 aaPredicted RBP22.4■■□□□ 1.18
RAB40C-205ENST00000539661 ERVK-7P63135 1459 aa22.4■■□□□ 1.18
RAB40C-205ENST00000539661 CLTCL1P53675 1640 aa22.39■■□□□ 1.18
RAB40C-205ENST00000539661 PDZRN3Q9UPQ7 1066 aa22.39■■□□□ 1.17
RAB40C-205ENST00000539661 XRCC6P12956 609 aaKnown RBP eCLIP22.38■■□□□ 1.17
RAB40C-205ENST00000539661 PCDHB15Q9Y5E8 787 aa22.38■■□□□ 1.17
RAB40C-205ENST00000539661 SHPRHQ149N8 1683 aa22.38■■□□□ 1.17
RAB40C-205ENST00000539661 WDR63Q8IWG1 891 aa22.37■■□□□ 1.17
RAB40C-205ENST00000539661 IQSEC2Q5JU85 1478 aa22.37■■□□□ 1.17
RAB40C-205ENST00000539661 CLCN1P35523 988 aa22.36■■□□□ 1.17
RAB40C-205ENST00000539661 EFCAB2Q5VUJ9 269 aa22.36■■□□□ 1.17
RAB40C-205ENST00000539661 PHF23Q9BUL5 403 aaPredicted RBP22.36■■□□□ 1.17
RAB40C-205ENST00000539661 CHMP5Q9NZZ3 219 aa22.36■■□□□ 1.17
RAB40C-205ENST00000539661 KANK1Q14678 1352 aa22.36■■□□□ 1.17
Retrieved 100 of 20,778 RNA–protein pairs in 7.5 ms