RNA–Protein interactions for RNA: ENST00000539442.1

LEMD3-202, Transcript of LEM domain containing 3, humanhuman

TSL 2

Gene LEMD3, Length 932 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LEMD3-202ENST00000539442 MADDQ8WXG6 1647 aa15.28■□□□□ 0.04
LEMD3-202ENST00000539442 FBXO31Q5XUX0 539 aaPredicted RBP15.28■□□□□ 0.04
LEMD3-202ENST00000539442 STAC3Q96MF2 364 aa15.27■□□□□ 0.04
LEMD3-202ENST00000539442 KIF1BO60333 1816 aa15.27■□□□□ 0.03
LEMD3-202ENST00000539442 TNRQ92752 1358 aa15.26■□□□□ 0.03
LEMD3-202ENST00000539442 PIP4P2Q8N4L2 257 aa15.26■□□□□ 0.03
LEMD3-202ENST00000539442 C3P01024 1663 aa15.25■□□□□ 0.03
LEMD3-202ENST00000539442 IDI1Q13907 227 aa15.25■□□□□ 0.03
LEMD3-202ENST00000539442 CFAP65Q6ZU64 1925 aaKnown RBP15.25■□□□□ 0.03
LEMD3-202ENST00000539442 UHRF1BP1Q6BDS2 1440 aa15.25■□□□□ 0.03
LEMD3-202ENST00000539442 RGL3Q3MIN7 710 aa15.24■□□□□ 0.03
LEMD3-202ENST00000539442 PLSCR2Q9NRY7 297 aa15.24■□□□□ 0.03
LEMD3-202ENST00000539442 RIMS1Q86UR5 1692 aaKnown RBP15.24■□□□□ 0.03
LEMD3-202ENST00000539442 NLRP1Q9C000 1473 aa15.23■□□□□ 0.03
LEMD3-202ENST00000539442 DCAF11Q8TEB1 546 aa15.23■□□□□ 0.03
LEMD3-202ENST00000539442 RPGRIP1LQ68CZ1 1315 aa15.22■□□□□ 0.03
LEMD3-202ENST00000539442 MYOM2P54296 1465 aa15.21■□□□□ 0.03
LEMD3-202ENST00000539442 CHGAP10645 457 aaKnown RBP15.21■□□□□ 0.03
LEMD3-202ENST00000539442 TMEM131LA2VDJ0 1609 aa15.21■□□□□ 0.02
LEMD3-202ENST00000539442 KCNA4P22459 653 aa15.2■□□□□ 0.02
LEMD3-202ENST00000539442 CEBPAP49715 358 aaPredicted RBP15.2■□□□□ 0.02
LEMD3-202ENST00000539442 AKT1S1Q96B36 256 aa15.2■□□□□ 0.02
LEMD3-202ENST00000539442 KDM5AP29375 1690 aaKnown RBP15.19■□□□□ 0.02
LEMD3-202ENST00000539442 PRAG1Q86YV5 1406 aa15.19■□□□□ 0.02
LEMD3-202ENST00000539442 ZNF326Q5BKZ1 582 aaKnown RBP15.19■□□□□ 0.02
LEMD3-202ENST00000539442 SAMD1Q6SPF0 538 aaPredicted RBP15.19■□□□□ 0.02
LEMD3-202ENST00000539442 NBPF8Q3BBV2 869 aa15.18■□□□□ 0.02
LEMD3-202ENST00000539442 KDM2AQ9Y2K7 1162 aa15.18■□□□□ 0.02
LEMD3-202ENST00000539442 A2ML1A8K2U0 1454 aa15.18■□□□□ 0.02
LEMD3-202ENST00000539442 IFT172Q9UG01 1749 aa15.17■□□□□ 0.02
LEMD3-202ENST00000539442 PTPRMP28827 1452 aa15.17■□□□□ 0.02
LEMD3-202ENST00000539442 RALGAPBQ86X10 1494 aa15.17■□□□□ 0.02
LEMD3-202ENST00000539442 STAG3Q9UJ98 1225 aa15.17■□□□□ 0.02
LEMD3-202ENST00000539442 NEXMIFQ5QGS0 1516 aa15.17■□□□□ 0.02
LEMD3-202ENST00000539442 NRXN1Q9ULB1 1477 aa15.16■□□□□ 0.02
LEMD3-202ENST00000539442 ZFYVE9O95405 1425 aa15.16■□□□□ 0.02
LEMD3-202ENST00000539442 MYO3AQ8NEV4 1616 aa15.15■□□□□ 0.02
LEMD3-202ENST00000539442 PPLO60437 1756 aa15.15■□□□□ 0.02
LEMD3-202ENST00000539442 VGFO15240 615 aaPredicted RBP15.13■□□□□ 0.01
LEMD3-202ENST00000539442 UBR1Q8IWV7 1749 aa15.12■□□□□ 0.01
LEMD3-202ENST00000539442 TRPM1Q7Z4N2 1603 aa15.12■□□□□ 0.01
LEMD3-202ENST00000539442 PIK3C2GO75747 1445 aa15.11■□□□□ 0.01
LEMD3-202ENST00000539442 MYO5BQ9ULV0 1848 aa15.11■□□□□ 0.01
LEMD3-202ENST00000539442 ABCF1Q8NE71 845 aaKnown RBP eCLIP15.11■□□□□ 0.01
LEMD3-202ENST00000539442 ADGRF5Q8IZF2 1346 aa15.11■□□□□ 0.01
LEMD3-202ENST00000539442 CEP170BQ9Y4F5 1589 aaPredicted RBP15.11■□□□□ 0.01
LEMD3-202ENST00000539442 GPRASP1Q5JY77 1395 aa15.11■□□□□ 0.01
LEMD3-202ENST00000539442 RIMS2Q9UQ26 1411 aa15.1■□□□□ 0.01
LEMD3-202ENST00000539442 KIAA1210Q9ULL0 1709 aa15.1■□□□□ 0.01
LEMD3-202ENST00000539442 HDGFP51858 240 aaKnown RBP15.1■□□□□ 0.01
LEMD3-202ENST00000539442 ROCK2O75116 1388 aaKnown RBP15.1■□□□□ 0.01
LEMD3-202ENST00000539442 TMEM2Q9UHN6 1383 aa15.1■□□□□ 0.01
LEMD3-202ENST00000539442 ZNF142P52746 1687 aaPredicted RBP15.09■□□□□ 0.01
LEMD3-202ENST00000539442 LAMC1P11047 1609 aa15.09■□□□□ 0.01
LEMD3-202ENST00000539442 SETD1BQ9UPS6 1966 aaKnown RBP15.09■□□□□ 0.01
LEMD3-202ENST00000539442 SLIT1O75093 1534 aa15.08■□□□□ 0.01
LEMD3-202ENST00000539442 THEMISQ8N1K5 641 aaPredicted RBP15.08■□□□□ 0
LEMD3-202ENST00000539442 ARHGAP23Q9P227 1491 aa15.08■□□□□ 0
LEMD3-202ENST00000539442 KDM4FA0A1W2PPD8 638 aa15.07■□□□□ 0
LEMD3-202ENST00000539442 LHX8Q68G74 356 aa15.06■□□□□ 0
LEMD3-202ENST00000539442 CARD11Q9BXL7 1154 aa15.06■□□□□ 0
LEMD3-202ENST00000539442 ZNF316A6NFI3 1004 aaPredicted RBP15.05■□□□□ -0
LEMD3-202ENST00000539442 SLC4A2P04920 1241 aa15.05■□□□□ -0
LEMD3-202ENST00000539442 EIF4G2P78344 907 aaKnown RBP eCLIP15.05■□□□□ -0
LEMD3-202ENST00000539442 C14orf93Q9H972 538 aaKnown RBP15.05■□□□□ -0
LEMD3-202ENST00000539442 SETBP1Q9Y6X0 1596 aa15.05■□□□□ -0
LEMD3-202ENST00000539442 USP47Q96K76 1375 aa15.03■□□□□ -0
LEMD3-202ENST00000539442 NBPF1Q3BBV0 1214 aa15.03■□□□□ -0
LEMD3-202ENST00000539442 CFAP70Q5T0N1 1121 aa15.03■□□□□ -0
LEMD3-202ENST00000539442 NUTM2DQ5VT03 806 aaPredicted RBP15.03■□□□□ -0
LEMD3-202ENST00000539442 EID1Q9Y6B2 187 aa15.03■□□□□ -0
LEMD3-202ENST00000539442 POLA2Q14181 598 aa15.02■□□□□ -0
LEMD3-202ENST00000539442 PLEKHG1Q9ULL1 1385 aa15.01□□□□□ -0.01
LEMD3-202ENST00000539442 HSPA5P11021 654 aaKnown RBP15.01□□□□□ -0.01
LEMD3-202ENST00000539442 ADGRB1O14514 1584 aa15.01□□□□□ -0.01
LEMD3-202ENST00000539442 SCAF11Q99590 1463 aaKnown RBP15.01□□□□□ -0.01
LEMD3-202ENST00000539442 REM2Q8IYK8 340 aaPredicted RBP15□□□□□ -0.01
LEMD3-202ENST00000539442 TXNDC2Q86VQ3 553 aa14.99□□□□□ -0.01
LEMD3-202ENST00000539442 ALKQ9UM73 1620 aa14.99□□□□□ -0.01
LEMD3-202ENST00000539442 EIF3AQ14152 1382 aaKnown RBP14.98□□□□□ -0.01
LEMD3-202ENST00000539442 IQGAP1P46940 1657 aa14.98□□□□□ -0.01
LEMD3-202ENST00000539442 LTKP29376 864 aa14.98□□□□□ -0.01
LEMD3-202ENST00000539442 NRXN3Q9Y4C0 1643 aa14.98□□□□□ -0.01
LEMD3-202ENST00000539442 FXR2P51116 673 aaKnown RBP eCLIP14.96□□□□□ -0.01
LEMD3-202ENST00000539442 ANKLE2Q86XL3 938 aa14.96□□□□□ -0.01
LEMD3-202ENST00000539442 ASXL1Q8IXJ9 1541 aa14.96□□□□□ -0.02
LEMD3-202ENST00000539442 DIP2AQ14689 1571 aa14.95□□□□□ -0.02
LEMD3-202ENST00000539442 ADAMTS13Q76LX8 1427 aa14.95□□□□□ -0.02
LEMD3-202ENST00000539442 SETD1AO15047 1707 aaKnown RBP14.95□□□□□ -0.02
LEMD3-202ENST00000539442 MED14O60244 1454 aa14.94□□□□□ -0.02
LEMD3-202ENST00000539442 ST20-MTHFSA0A0A6YYL1 179 aa14.93□□□□□ -0.02
LEMD3-202ENST00000539442 TMEM132EQ6IEE7 984 aa14.92□□□□□ -0.02
LEMD3-202ENST00000539442 BCANQ96GW7 911 aa14.92□□□□□ -0.02
LEMD3-202ENST00000539442 HIRIP3Q9BW71 556 aaPredicted RBP14.92□□□□□ -0.02
LEMD3-202ENST00000539442 YTHDC2Q9H6S0 1430 aaKnown RBP14.92□□□□□ -0.02
LEMD3-202ENST00000539442 LMTK3Q96Q04 1460 aa14.91□□□□□ -0.02
LEMD3-202ENST00000539442 LRPPRCP42704 1394 aaKnown RBP14.91□□□□□ -0.02
LEMD3-202ENST00000539442 SLC24A1O60721 1099 aa14.91□□□□□ -0.02
LEMD3-202ENST00000539442 TBX22Q9Y458 520 aa14.91□□□□□ -0.02
LEMD3-202ENST00000539442 SBNO2Q9Y2G9 1366 aa14.9□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 53.8 ms