RNA–Protein interactions for RNA: ENST00000539041.5

SMPDL3A-203, Transcript of sphingomyelin phosphodiesterase acid like 3A, humanhuman

TSL 2 BASIC

Gene SMPDL3A, Length 1,755 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPDL3A-203ENST00000539041 HNRNPUQ00839 825 aaKnown RBP eCLIP28.25■■■□□ 2.11
SMPDL3A-203ENST00000539041 NOS1P29475 1434 aa28.25■■■□□ 2.11
SMPDL3A-203ENST00000539041 TMF1P82094 1093 aa28.24■■■□□ 2.11
SMPDL3A-203ENST00000539041 SYNMO15061 1565 aa28.24■■■□□ 2.11
SMPDL3A-203ENST00000539041 KTN1Q86UP2 1357 aaKnown RBP28.23■■■□□ 2.11
SMPDL3A-203ENST00000539041 ARHGAP31Q2M1Z3 1444 aa28.23■■■□□ 2.11
SMPDL3A-203ENST00000539041 REREQ9P2R6 1566 aa28.23■■■□□ 2.11
SMPDL3A-203ENST00000539041 PREX1Q8TCU6 1659 aa28.21■■■□□ 2.11
SMPDL3A-203ENST00000539041 EIF3AQ14152 1382 aaKnown RBP28.19■■■□□ 2.1
SMPDL3A-203ENST00000539041 SETBP1Q9Y6X0 1596 aa28.18■■■□□ 2.1
SMPDL3A-203ENST00000539041 ADGRF5Q8IZF2 1346 aa28.18■■■□□ 2.1
SMPDL3A-203ENST00000539041 DNAJC5Q9H3Z4 198 aa28.18■■■□□ 2.1
SMPDL3A-203ENST00000539041 MYO3AQ8NEV4 1616 aa28.17■■■□□ 2.1
SMPDL3A-203ENST00000539041 FAM9BQ8IZU0 186 aa28.17■■■□□ 2.1
SMPDL3A-203ENST00000539041 KDM5AP29375 1690 aaKnown RBP28.16■■■□□ 2.1
SMPDL3A-203ENST00000539041 MYO5BQ9ULV0 1848 aa28.15■■■□□ 2.1
SMPDL3A-203ENST00000539041 CHGAP10645 457 aaKnown RBP28.14■■■□□ 2.1
SMPDL3A-203ENST00000539041 CNGB1Q14028 1251 aaPredicted RBP28.14■■■□□ 2.1
SMPDL3A-203ENST00000539041 RALBP1Q15311 655 aa28.14■■■□□ 2.1
SMPDL3A-203ENST00000539041 SUPT16HQ9Y5B9 1047 aaKnown RBP28.14■■■□□ 2.09
SMPDL3A-203ENST00000539041 MYOM1P52179 1685 aa28.13■■■□□ 2.09
SMPDL3A-203ENST00000539041 AGLP35573 1532 aa28.13■■■□□ 2.09
SMPDL3A-203ENST00000539041 CFAP70Q5T0N1 1121 aa28.12■■■□□ 2.09
SMPDL3A-203ENST00000539041 RPGRIP1LQ68CZ1 1315 aa28.12■■■□□ 2.09
SMPDL3A-203ENST00000539041 PIK3C2GO75747 1445 aa28.1■■■□□ 2.09
SMPDL3A-203ENST00000539041 MYBBP1AQ9BQG0 1328 aaKnown RBP28.1■■■□□ 2.09
SMPDL3A-203ENST00000539041 NEXMIFQ5QGS0 1516 aa28.09■■■□□ 2.09
SMPDL3A-203ENST00000539041 PER1O15534 1290 aaPredicted RBP28.09■■■□□ 2.09
SMPDL3A-203ENST00000539041 PARD3Q8TEW0 1356 aa28.08■■■□□ 2.09
SMPDL3A-203ENST00000539041 CDCA8Q53HL2 280 aa28.08■■■□□ 2.09
SMPDL3A-203ENST00000539041 BRD4O60885 1362 aaPredicted RBP28.07■■■□□ 2.08
SMPDL3A-203ENST00000539041 CLTCQ00610 1675 aaKnown RBP28.06■■■□□ 2.08
SMPDL3A-203ENST00000539041 ARHGEF40Q8TER5 1519 aa28.06■■■□□ 2.08
SMPDL3A-203ENST00000539041 ZBED9Q6R2W3 1325 aa28.04■■■□□ 2.08
SMPDL3A-203ENST00000539041 PANK3Q9H999 370 aa28.04■■■□□ 2.08
SMPDL3A-203ENST00000539041 TMEM131LA2VDJ0 1609 aa28.03■■■□□ 2.08
SMPDL3A-203ENST00000539041 QRICH2Q9H0J4 1663 aa28.03■■■□□ 2.08
SMPDL3A-203ENST00000539041 ADGRB1O14514 1584 aa28.02■■■□□ 2.08
SMPDL3A-203ENST00000539041 SLC24A1O60721 1099 aa28.02■■■□□ 2.08
SMPDL3A-203ENST00000539041 TMC1Q8TDI8 760 aa28.02■■■□□ 2.08
SMPDL3A-203ENST00000539041 C14orf93Q9H972 538 aaKnown RBP27.99■■■□□ 2.07
SMPDL3A-203ENST00000539041 SLC52A1Q9NWF4 448 aa27.99■■■□□ 2.07
SMPDL3A-203ENST00000539041 ERVK-7P63135 1459 aa27.99■■■□□ 2.07
SMPDL3A-203ENST00000539041 PNISRQ8TF01 805 aaKnown RBP27.99■■■□□ 2.07
SMPDL3A-203ENST00000539041 SBNO2Q9Y2G9 1366 aa27.97■■■□□ 2.07
SMPDL3A-203ENST00000539041 NEFLP07196 543 aa27.97■■■□□ 2.07
SMPDL3A-203ENST00000539041 PPP6R1Q9UPN7 881 aa27.97■■■□□ 2.07
SMPDL3A-203ENST00000539041 ARHGEF28Q8N1W1 1705 aaKnown RBP27.96■■■□□ 2.07
SMPDL3A-203ENST00000539041 IDI1Q13907 227 aa27.96■■■□□ 2.07
SMPDL3A-203ENST00000539041 NLRP13Q86W25 1043 aa27.95■■■□□ 2.06
SMPDL3A-203ENST00000539041 LRPPRCP42704 1394 aaKnown RBP27.95■■■□□ 2.06
SMPDL3A-203ENST00000539041 ZFYVE9O95405 1425 aa27.94■■■□□ 2.06
SMPDL3A-203ENST00000539041 FKBP8Q14318 412 aa27.94■■■□□ 2.06
SMPDL3A-203ENST00000539041 VGFO15240 615 aaPredicted RBP27.93■■■□□ 2.06
SMPDL3A-203ENST00000539041 CC2D1BQ5T0F9 858 aaKnown RBP27.91■■■□□ 2.06
SMPDL3A-203ENST00000539041 ASXL1Q8IXJ9 1541 aa27.9■■■□□ 2.06
SMPDL3A-203ENST00000539041 CENPJQ9HC77 1338 aaPredicted RBP27.9■■■□□ 2.06
SMPDL3A-203ENST00000539041 SPATA31D1Q6ZQQ2 1576 aa27.89■■■□□ 2.06
SMPDL3A-203ENST00000539041 KNSTRNQ9Y448 316 aa27.87■■■□□ 2.05
SMPDL3A-203ENST00000539041 TRAK1Q9UPV9 953 aa27.84■■■□□ 2.05
SMPDL3A-203ENST00000539041 FBXO31Q5XUX0 539 aaPredicted RBP27.83■■■□□ 2.05
SMPDL3A-203ENST00000539041 NPC1L1Q9UHC9 1359 aa27.82■■■□□ 2.04
SMPDL3A-203ENST00000539041 NUTM2DQ5VT03 806 aaPredicted RBP27.82■■■□□ 2.04
SMPDL3A-203ENST00000539041 TMEM132EQ6IEE7 984 aa27.82■■■□□ 2.04
SMPDL3A-203ENST00000539041 AMER1Q5JTC6 1135 aaPredicted RBP27.8■■■□□ 2.04
SMPDL3A-203ENST00000539041 SMG6Q86US8 1419 aaKnown RBP27.78■■■□□ 2.04
SMPDL3A-203ENST00000539041 INSRP06213 1382 aa27.77■■■□□ 2.04
SMPDL3A-203ENST00000539041 MLECQ14165 292 aa27.76■■■□□ 2.03
SMPDL3A-203ENST00000539041 BCANQ96GW7 911 aa27.75■■■□□ 2.03
SMPDL3A-203ENST00000539041 PELP1Q8IZL8 1130 aaKnown RBP27.74■■■□□ 2.03
SMPDL3A-203ENST00000539041 ALKQ9UM73 1620 aa27.73■■■□□ 2.03
SMPDL3A-203ENST00000539041 A2ML1A8K2U0 1454 aa27.72■■■□□ 2.03
SMPDL3A-203ENST00000539041 TULP4Q9NRJ4 1543 aa27.72■■■□□ 2.03
SMPDL3A-203ENST00000539041 STAG3Q9UJ98 1225 aa27.71■■■□□ 2.03
SMPDL3A-203ENST00000539041 USP32Q8NFA0 1604 aa27.71■■■□□ 2.03
SMPDL3A-203ENST00000539041 BLMP54132 1417 aaPredicted RBP27.71■■■□□ 2.03
SMPDL3A-203ENST00000539041 PPP2R1AP30153 589 aa27.71■■■□□ 2.03
SMPDL3A-203ENST00000539041 SETD1AO15047 1707 aaKnown RBP27.7■■■□□ 2.03
SMPDL3A-203ENST00000539041 NUDCQ9Y266 331 aa27.69■■■□□ 2.02
SMPDL3A-203ENST00000539041 PUS7Q96PZ0 661 aaKnown RBP27.67■■■□□ 2.02
SMPDL3A-203ENST00000539041 ESF1Q9H501 851 aaKnown RBP27.67■■■□□ 2.02
SMPDL3A-203ENST00000539041 PTPRMP28827 1452 aa27.66■■■□□ 2.02
SMPDL3A-203ENST00000539041 EVC2Q86UK5 1308 aa27.66■■■□□ 2.02
SMPDL3A-203ENST00000539041 ZMYM3Q14202 1370 aa27.65■■■□□ 2.02
SMPDL3A-203ENST00000539041 YTHDC2Q9H6S0 1430 aaKnown RBP27.64■■■□□ 2.02
SMPDL3A-203ENST00000539041 RIMS2Q9UQ26 1411 aa27.64■■■□□ 2.02
SMPDL3A-203ENST00000539041 CARD14Q9BXL6 1004 aa27.64■■■□□ 2.02
SMPDL3A-203ENST00000539041 ERICH6BQ5W0A0 696 aa27.62■■■□□ 2.01
SMPDL3A-203ENST00000539041 NSD3Q9BZ95 1437 aa27.6■■■□□ 2.01
SMPDL3A-203ENST00000539041 SENP3-EIF4A1A0A087X0R7 540 aa27.6■■■□□ 2.01
SMPDL3A-203ENST00000539041 NRXN3Q9Y4C0 1643 aa27.59■■■□□ 2.01
SMPDL3A-203ENST00000539041 UBR1Q8IWV7 1749 aa27.59■■■□□ 2.01
SMPDL3A-203ENST00000539041 STK26Q9P289 416 aa27.58■■■□□ 2.01
SMPDL3A-203ENST00000539041 IRX6P78412 446 aaPredicted RBP27.58■■■□□ 2
SMPDL3A-203ENST00000539041 DLC1Q96QB1 1528 aa27.57■■■□□ 2
SMPDL3A-203ENST00000539041 SLC12A5Q9H2X9 1139 aa27.57■■■□□ 2
SMPDL3A-203ENST00000539041 SENP3Q9H4L4 574 aaPredicted RBP27.56■■■□□ 2
SMPDL3A-203ENST00000539041 PDE3BQ13370 1112 aa27.55■■■□□ 2
SMPDL3A-203ENST00000539041 TNRQ92752 1358 aa27.54■■■□□ 2
SMPDL3A-203ENST00000539041 WDR43Q15061 677 aaKnown RBP eCLIP27.54■■■□□ 2
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms