RNA–Protein interactions for RNA: ENST00000533806.5

VPS28-216, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 650 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-216ENST00000533806 HDGFP51858 240 aaKnown RBP19.29■□□□□ 0.68
VPS28-216ENST00000533806 ABCF1Q8NE71 845 aaKnown RBP eCLIP19.29■□□□□ 0.68
VPS28-216ENST00000533806 PLEKHG1Q9ULL1 1385 aa19.29■□□□□ 0.68
VPS28-216ENST00000533806 MYO5BQ9ULV0 1848 aa19.28■□□□□ 0.68
VPS28-216ENST00000533806 FBXO41Q8TF61 875 aa19.27■□□□□ 0.68
VPS28-216ENST00000533806 ILDR1Q86SU0 546 aaPredicted RBP19.26■□□□□ 0.67
VPS28-216ENST00000533806 IQSEC2Q5JU85 1478 aa19.26■□□□□ 0.67
VPS28-216ENST00000533806 SLC26A8Q96RN1 970 aa19.24■□□□□ 0.67
VPS28-216ENST00000533806 CPS1P31327 1500 aa19.24■□□□□ 0.67
VPS28-216ENST00000533806 NUTM2DQ5VT03 806 aaPredicted RBP19.23■□□□□ 0.67
VPS28-216ENST00000533806 PPP1R15AO75807 674 aaPredicted RBP19.22■□□□□ 0.67
VPS28-216ENST00000533806 TBX22Q9Y458 520 aa19.22■□□□□ 0.67
VPS28-216ENST00000533806 ADAMTS13Q76LX8 1427 aa19.22■□□□□ 0.67
VPS28-216ENST00000533806 CCDC144AA2RUR9 1427 aa19.21■□□□□ 0.67
VPS28-216ENST00000533806 SPATA31E1Q6ZUB1 1445 aa19.21■□□□□ 0.67
VPS28-216ENST00000533806 NEXMIFQ5QGS0 1516 aa19.2■□□□□ 0.66
VPS28-216ENST00000533806 STRCP1A6NGW2 1772 aa19.2■□□□□ 0.66
VPS28-216ENST00000533806 ZNF326Q5BKZ1 582 aaKnown RBP19.2■□□□□ 0.66
VPS28-216ENST00000533806 RPGRIP1LQ68CZ1 1315 aa19.2■□□□□ 0.66
VPS28-216ENST00000533806 ANKRD30BQ9BXX2 1392 aa19.19■□□□□ 0.66
VPS28-216ENST00000533806 KCNA6P17658 529 aa19.19■□□□□ 0.66
VPS28-216ENST00000533806 LRRC7Q96NW7 1537 aa19.18■□□□□ 0.66
VPS28-216ENST00000533806 KIF1BO60333 1816 aa19.16■□□□□ 0.66
VPS28-216ENST00000533806 BCANQ96GW7 911 aa19.16■□□□□ 0.66
VPS28-216ENST00000533806 SENP3Q9H4L4 574 aaPredicted RBP19.16■□□□□ 0.66
VPS28-216ENST00000533806 SETBP1Q9Y6X0 1596 aa19.15■□□□□ 0.66
VPS28-216ENST00000533806 TRIM26Q12899 539 aaPredicted RBP19.15■□□□□ 0.66
VPS28-216ENST00000533806 VGFO15240 615 aaPredicted RBP19.14■□□□□ 0.65
VPS28-216ENST00000533806 PIK3R4Q99570 1358 aa19.14■□□□□ 0.65
VPS28-216ENST00000533806 DIP2AQ14689 1571 aa19.14■□□□□ 0.65
VPS28-216ENST00000533806 NRXN3Q9Y4C0 1643 aa19.14■□□□□ 0.65
VPS28-216ENST00000533806 NWD1Q149M9 1564 aa19.13■□□□□ 0.65
VPS28-216ENST00000533806 RGL3Q3MIN7 710 aa19.1■□□□□ 0.65
VPS28-216ENST00000533806 NKTRP30414 1462 aaKnown RBP19.09■□□□□ 0.65
VPS28-216ENST00000533806 PTPRUQ92729 1446 aa19.09■□□□□ 0.65
VPS28-216ENST00000533806 METP08581 1390 aa19.09■□□□□ 0.65
VPS28-216ENST00000533806 TMEM94Q12767 1356 aa19.07■□□□□ 0.64
VPS28-216ENST00000533806 CHD2O14647 1828 aaKnown RBP19.07■□□□□ 0.64
VPS28-216ENST00000533806 ADGRF5Q8IZF2 1346 aa19.07■□□□□ 0.64
VPS28-216ENST00000533806 PPLO60437 1756 aa19.07■□□□□ 0.64
VPS28-216ENST00000533806 ALKQ9UM73 1620 aa19.07■□□□□ 0.64
VPS28-216ENST00000533806 UBAP1LF5GYI3 381 aa19.06■□□□□ 0.64
VPS28-216ENST00000533806 PROSER2Q86WR7 435 aaPredicted RBP19.06■□□□□ 0.64
VPS28-216ENST00000533806 AMOTL2Q9Y2J4 779 aa19.05■□□□□ 0.64
VPS28-216ENST00000533806 XIRP1Q702N8 1843 aaKnown RBP19.04■□□□□ 0.64
VPS28-216ENST00000533806 IFT172Q9UG01 1749 aa19.03■□□□□ 0.64
VPS28-216ENST00000533806 TOM1O60784 492 aa19.03■□□□□ 0.64
VPS28-216ENST00000533806 RBM33Q96EV2 1170 aaKnown RBP19.03■□□□□ 0.64
VPS28-216ENST00000533806 NRXN1Q9ULB1 1477 aa19.03■□□□□ 0.64
VPS28-216ENST00000533806 NCOA3Q9Y6Q9 1424 aa19.02■□□□□ 0.64
VPS28-216ENST00000533806 PIK3C2GO75747 1445 aa19.01■□□□□ 0.63
VPS28-216ENST00000533806 SETD1AO15047 1707 aaKnown RBP19■□□□□ 0.63
VPS28-216ENST00000533806 XRN1Q8IZH2 1706 aaKnown RBP19■□□□□ 0.63
VPS28-216ENST00000533806 DHX57Q6P158 1386 aaKnown RBP19■□□□□ 0.63
VPS28-216ENST00000533806 MYOM2P54296 1465 aa19■□□□□ 0.63
VPS28-216ENST00000533806 PRAG1Q86YV5 1406 aa19■□□□□ 0.63
VPS28-216ENST00000533806 STAC3Q96MF2 364 aa18.97■□□□□ 0.63
VPS28-216ENST00000533806 C14orf93Q9H972 538 aaKnown RBP18.96■□□□□ 0.63
VPS28-216ENST00000533806 PIP4K2BP78356 416 aa18.94■□□□□ 0.62
VPS28-216ENST00000533806 DCAF11Q8TEB1 546 aa18.94■□□□□ 0.62
VPS28-216ENST00000533806 MSH6P52701 1360 aa18.93■□□□□ 0.62
VPS28-216ENST00000533806 ROBO2Q9HCK4 1378 aa18.93■□□□□ 0.62
VPS28-216ENST00000533806 PTCH1Q13635 1447 aa18.93■□□□□ 0.62
VPS28-216ENST00000533806 C19orf44Q9H6X5 657 aa18.93■□□□□ 0.62
VPS28-216ENST00000533806 ASXL1Q8IXJ9 1541 aa18.93■□□□□ 0.62
VPS28-216ENST00000533806 CFAP70Q5T0N1 1121 aa18.92■□□□□ 0.62
VPS28-216ENST00000533806 LRPPRCP42704 1394 aaKnown RBP18.91■□□□□ 0.62
VPS28-216ENST00000533806 ABCC11Q96J66 1382 aa18.91■□□□□ 0.62
VPS28-216ENST00000533806 TECPR2O15040 1411 aa18.91■□□□□ 0.62
VPS28-216ENST00000533806 FAM135BQ49AJ0 1406 aa18.91■□□□□ 0.62
VPS28-216ENST00000533806 TMEM132EQ6IEE7 984 aa18.9■□□□□ 0.62
VPS28-216ENST00000533806 SIN3AQ96ST3 1273 aa18.89■□□□□ 0.61
VPS28-216ENST00000533806 SLAIN2Q9P270 581 aa18.89■□□□□ 0.61
VPS28-216ENST00000533806 KDM2AQ9Y2K7 1162 aa18.89■□□□□ 0.61
VPS28-216ENST00000533806 DCCP43146 1447 aa18.88■□□□□ 0.61
VPS28-216ENST00000533806 HSPA1LP34931 641 aa18.87■□□□□ 0.61
VPS28-216ENST00000533806 CADPS2Q86UW7 1296 aa18.87■□□□□ 0.61
VPS28-216ENST00000533806 SIRT1Q96EB6 747 aa18.87■□□□□ 0.61
VPS28-216ENST00000533806 YTHDC2Q9H6S0 1430 aaKnown RBP18.87■□□□□ 0.61
VPS28-216ENST00000533806 SCAF1Q9H7N4 1312 aaKnown RBP18.87■□□□□ 0.61
VPS28-216ENST00000533806 ADGRL3Q9HAR2 1447 aa18.87■□□□□ 0.61
VPS28-216ENST00000533806 C14orf37Q86TY3 774 aa18.86■□□□□ 0.61
VPS28-216ENST00000533806 SIPA1L2Q9P2F8 1722 aaPredicted RBP18.86■□□□□ 0.61
VPS28-216ENST00000533806 ADGRB1O14514 1584 aa18.85■□□□□ 0.61
VPS28-216ENST00000533806 LAMC1P11047 1609 aa18.85■□□□□ 0.61
VPS28-216ENST00000533806 ATF3P18847 181 aa18.84■□□□□ 0.61
VPS28-216ENST00000533806 L3MBTL2Q969R5 705 aa18.84■□□□□ 0.61
VPS28-216ENST00000533806 STK26Q9P289 416 aa18.84■□□□□ 0.61
VPS28-216ENST00000533806 WAPLQ7Z5K2 1190 aa18.82■□□□□ 0.6
VPS28-216ENST00000533806 PCGF6Q9BYE7 350 aa18.82■□□□□ 0.6
VPS28-216ENST00000533806 MST1RQ04912 1400 aa18.81■□□□□ 0.6
VPS28-216ENST00000533806 PLEKHH1Q9ULM0 1364 aa18.81■□□□□ 0.6
VPS28-216ENST00000533806 NEUROD1Q13562 356 aa18.8■□□□□ 0.6
VPS28-216ENST00000533806 KNDC1Q76NI1 1749 aa18.8■□□□□ 0.6
VPS28-216ENST00000533806 NALCNQ8IZF0 1738 aa18.8■□□□□ 0.6
VPS28-216ENST00000533806 ROBO1Q9Y6N7 1651 aa18.78■□□□□ 0.6
VPS28-216ENST00000533806 DLC1Q96QB1 1528 aa18.78■□□□□ 0.6
VPS28-216ENST00000533806 BRINP3Q76B58 766 aa18.77■□□□□ 0.6
VPS28-216ENST00000533806 C1orf167Q5SNV9 1468 aa18.74■□□□□ 0.59
VPS28-216ENST00000533806 NBPF1Q3BBV0 1214 aa18.74■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms