RNA–Protein interactions for RNA: ENST00000532127.5

PUF60-219, Transcript of poly(U) binding splicing factor 60, human

TSL 2

Gene PUF60, Length 604 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PUF60-219	ENST00000532127	ZFYVE9	O95405	1425 aa		28.19	■■■□□ 2.1
PUF60-219	ENST00000532127	RIMS2	Q9UQ26	1411 aa		28.19	■■■□□ 2.1
PUF60-219	ENST00000532127	TIMELESS	Q9UNS1	1208 aa		28.19	■■■□□ 2.1
PUF60-219	ENST00000532127	L3MBTL2	Q969R5	705 aa		28.16	■■■□□ 2.1
PUF60-219	ENST00000532127	MYOM2	P54296	1465 aa		28.15	■■■□□ 2.1
PUF60-219	ENST00000532127	HDGF	P51858	240 aa	Known RBP	28.14	■■■□□ 2.1
PUF60-219	ENST00000532127	AEBP2	Q6ZN18	517 aa	Predicted RBP	28.14	■■■□□ 2.1
PUF60-219	ENST00000532127	ABCF1	Q8NE71	845 aa	Known RBP eCLIP	28.14	■■■□□ 2.1
PUF60-219	ENST00000532127	STAC3	Q96MF2	364 aa		28.14	■■■□□ 2.1
PUF60-219	ENST00000532127	EID1	Q9Y6B2	187 aa		28.12	■■■□□ 2.09
PUF60-219	ENST00000532127	SCAF11	Q99590	1463 aa	Known RBP	28.12	■■■□□ 2.09
PUF60-219	ENST00000532127	DCAF11	Q8TEB1	546 aa		28.11	■■■□□ 2.09
PUF60-219	ENST00000532127	VGF	O15240	615 aa	Predicted RBP	28.1	■■■□□ 2.09
PUF60-219	ENST00000532127	POLR1A	O95602	1720 aa	Predicted RBP	28.09	■■■□□ 2.09
PUF60-219	ENST00000532127	PPP1R15A	O75807	674 aa	Predicted RBP	28.08	■■■□□ 2.09
PUF60-219	ENST00000532127	TXNDC2	Q86VQ3	553 aa		28.08	■■■□□ 2.09
PUF60-219	ENST00000532127	ANKLE2	Q86XL3	938 aa		28.08	■■■□□ 2.09
PUF60-219	ENST00000532127	NRXN1	Q9ULB1	1477 aa		28.08	■■■□□ 2.09
PUF60-219	ENST00000532127	HSPA2	P54652	639 aa		28.07	■■■□□ 2.08
PUF60-219	ENST00000532127	LTK	P29376	864 aa		28.06	■■■□□ 2.08
PUF60-219	ENST00000532127	NUTM2D	Q5VT03	806 aa	Predicted RBP	28.05	■■■□□ 2.08
PUF60-219	ENST00000532127	KDM2A	Q9Y2K7	1162 aa		28.05	■■■□□ 2.08
PUF60-219	ENST00000532127	PLEKHG1	Q9ULL1	1385 aa		28.03	■■■□□ 2.08
PUF60-219	ENST00000532127	PIK3C2G	O75747	1445 aa		28.02	■■■□□ 2.08
PUF60-219	ENST00000532127	PRAG1	Q86YV5	1406 aa		28.02	■■■□□ 2.08
PUF60-219	ENST00000532127	ADGRF5	Q8IZF2	1346 aa		28.02	■■■□□ 2.08
PUF60-219	ENST00000532127	SETBP1	Q9Y6X0	1596 aa		28.01	■■■□□ 2.07
PUF60-219	ENST00000532127	MED14	O60244	1454 aa		28.01	■■■□□ 2.07
PUF60-219	ENST00000532127	ZEB1	P37275	1124 aa	Predicted RBP	27.99	■■■□□ 2.07
PUF60-219	ENST00000532127	NCKAP5L	Q9HCH0	1330 aa		27.97	■■■□□ 2.07
PUF60-219	ENST00000532127	NPHP4	O75161	1426 aa	Predicted RBP	27.97	■■■□□ 2.07
PUF60-219	ENST00000532127	IQGAP1	P46940	1657 aa		27.97	■■■□□ 2.07
PUF60-219	ENST00000532127	STRC	Q7RTU9	1775 aa		27.96	■■■□□ 2.07
PUF60-219	ENST00000532127	NRXN3	Q9Y4C0	1643 aa		27.96	■■■□□ 2.07
PUF60-219	ENST00000532127	LAMC1	P11047	1609 aa		27.96	■■■□□ 2.07
PUF60-219	ENST00000532127	DIP2A	Q14689	1571 aa		27.94	■■■□□ 2.06
PUF60-219	ENST00000532127	KIAA1210	Q9ULL0	1709 aa		27.93	■■■□□ 2.06
PUF60-219	ENST00000532127	BCAN	Q96GW7	911 aa		27.92	■■■□□ 2.06
PUF60-219	ENST00000532127	ALK	Q9UM73	1620 aa		27.91	■■■□□ 2.06
PUF60-219	ENST00000532127	ADAMTS13	Q76LX8	1427 aa		27.91	■■■□□ 2.06
PUF60-219	ENST00000532127	TRPM1	Q7Z4N2	1603 aa		27.9	■■■□□ 2.06
PUF60-219	ENST00000532127	NBPF8	Q3BBV2	869 aa		27.9	■■■□□ 2.06
PUF60-219	ENST00000532127	C14orf93	Q9H972	538 aa	Known RBP	27.89	■■■□□ 2.06
PUF60-219	ENST00000532127	SETD1A	O15047	1707 aa	Known RBP	27.89	■■■□□ 2.05
PUF60-219	ENST00000532127	RALGAPB	Q86X10	1494 aa		27.89	■■■□□ 2.05
PUF60-219	ENST00000532127	SENP3	Q9H4L4	574 aa	Predicted RBP	27.87	■■■□□ 2.05
PUF60-219	ENST00000532127	CFAP70	Q5T0N1	1121 aa		27.85	■■■□□ 2.05
PUF60-219	ENST00000532127	TBX22	Q9Y458	520 aa		27.85	■■■□□ 2.05
PUF60-219	ENST00000532127	SLC26A8	Q96RN1	970 aa		27.83	■■■□□ 2.05
PUF60-219	ENST00000532127	DMRT2	Q9Y5R5	561 aa		27.83	■■■□□ 2.05
PUF60-219	ENST00000532127	ASXL1	Q8IXJ9	1541 aa		27.82	■■■□□ 2.04
PUF60-219	ENST00000532127	ADGRB1	O14514	1584 aa		27.82	■■■□□ 2.04
PUF60-219	ENST00000532127	ROCK2	O75116	1388 aa	Known RBP	27.81	■■■□□ 2.04
PUF60-219	ENST00000532127	PIK3R4	Q99570	1358 aa		27.8	■■■□□ 2.04
PUF60-219	ENST00000532127	GPRASP1	Q5JY77	1395 aa		27.79	■■■□□ 2.04
PUF60-219	ENST00000532127	MET	P08581	1390 aa		27.78	■■■□□ 2.04
PUF60-219	ENST00000532127	NBPF1	Q3BBV0	1214 aa		27.76	■■■□□ 2.03
PUF60-219	ENST00000532127	TMEM132E	Q6IEE7	984 aa		27.74	■■■□□ 2.03
PUF60-219	ENST00000532127	YTHDC2	Q9H6S0	1430 aa	Known RBP	27.73	■■■□□ 2.03
PUF60-219	ENST00000532127	LRPPRC	P42704	1394 aa	Known RBP	27.72	■■■□□ 2.03
PUF60-219	ENST00000532127	NWD1	Q149M9	1564 aa		27.71	■■■□□ 2.03
PUF60-219	ENST00000532127	CARD11	Q9BXL7	1154 aa		27.71	■■■□□ 2.03
PUF60-219	ENST00000532127	CHD2	O14647	1828 aa	Known RBP	27.71	■■■□□ 2.03
PUF60-219	ENST00000532127	KNDC1	Q76NI1	1749 aa		27.7	■■■□□ 2.03
PUF60-219	ENST00000532127	XRN1	Q8IZH2	1706 aa	Known RBP	27.7	■■■□□ 2.03
PUF60-219	ENST00000532127	PTPRU	Q92729	1446 aa		27.69	■■■□□ 2.02
PUF60-219	ENST00000532127	TECPR2	O15040	1411 aa		27.68	■■■□□ 2.02
PUF60-219	ENST00000532127	ABCC11	Q96J66	1382 aa		27.68	■■■□□ 2.02
PUF60-219	ENST00000532127	CPS1	P31327	1500 aa		27.66	■■■□□ 2.02
PUF60-219	ENST00000532127	DLC1	Q96QB1	1528 aa		27.66	■■■□□ 2.02
PUF60-219	ENST00000532127	KCNA6	P17658	529 aa		27.65	■■■□□ 2.02
PUF60-219	ENST00000532127	PTCH1	Q13635	1447 aa		27.65	■■■□□ 2.02
PUF60-219	ENST00000532127	STK26	Q9P289	416 aa		27.64	■■■□□ 2.02
PUF60-219	ENST00000532127	AMOTL2	Q9Y2J4	779 aa		27.64	■■■□□ 2.02
PUF60-219	ENST00000532127	NKTR	P30414	1462 aa	Known RBP	27.64	■■■□□ 2.01
PUF60-219	ENST00000532127	EIF3A	Q14152	1382 aa	Known RBP	27.62	■■■□□ 2.01
PUF60-219	ENST00000532127	ARHGEF28	Q8N1W1	1705 aa	Known RBP	27.62	■■■□□ 2.01
PUF60-219	ENST00000532127	USP47	Q96K76	1375 aa		27.61	■■■□□ 2.01
PUF60-219	ENST00000532127	TRAK1	Q9UPV9	953 aa		27.61	■■■□□ 2.01
PUF60-219	ENST00000532127	FAM135B	Q49AJ0	1406 aa		27.59	■■■□□ 2.01
PUF60-219	ENST00000532127	STRCP1	A6NGW2	1772 aa		27.59	■■■□□ 2.01
PUF60-219	ENST00000532127	SIRT1	Q96EB6	747 aa		27.58	■■■□□ 2.01
PUF60-219	ENST00000532127	ZNF335	Q9H4Z2	1342 aa	Predicted RBP	27.58	■■■□□ 2.01
PUF60-219	ENST00000532127	ROBO2	Q9HCK4	1378 aa		27.58	■■■□□ 2.01
PUF60-219	ENST00000532127	EIF4G2	P78344	907 aa	Known RBP eCLIP	27.54	■■■□□ 2
PUF60-219	ENST00000532127	CENPJ	Q9HC77	1338 aa	Predicted RBP	27.52	■■■□□ 2
PUF60-219	ENST00000532127	PRAM1	Q96QH2	718 aa		27.52	■■■□□ 2
PUF60-219	ENST00000532127	POGK	Q9P215	609 aa		27.51	■■□□□ 1.99
PUF60-219	ENST00000532127	QRICH2	Q9H0J4	1663 aa		27.49	■■□□□ 1.99
PUF60-219	ENST00000532127	PLEKHH1	Q9ULM0	1364 aa		27.49	■■□□□ 1.99
PUF60-219	ENST00000532127	LTBP4	Q8N2S1	1624 aa		27.49	■■□□□ 1.99
PUF60-219	ENST00000532127	WAPL	Q7Z5K2	1190 aa		27.48	■■□□□ 1.99
PUF60-219	ENST00000532127	PROSER2	Q86WR7	435 aa	Predicted RBP	27.48	■■□□□ 1.99
PUF60-219	ENST00000532127	SBNO2	Q9Y2G9	1366 aa		27.47	■■□□□ 1.99
PUF60-219	ENST00000532127	LRRC7	Q96NW7	1537 aa		27.46	■■□□□ 1.99
PUF60-219	ENST00000532127	ST20-MTHFS	A0A0A6YYL1	179 aa		27.46	■■□□□ 1.99
PUF60-219	ENST00000532127	HSPA5	P11021	654 aa	Known RBP	27.46	■■□□□ 1.99
PUF60-219	ENST00000532127	NCOA3	Q9Y6Q9	1424 aa		27.46	■■□□□ 1.99
PUF60-219	ENST00000532127	TMEM94	Q12767	1356 aa		27.44	■■□□□ 1.98
PUF60-219	ENST00000532127	SAFB2	Q14151	953 aa	Known RBP eCLIP	27.43	■■□□□ 1.98

Retrieved 100 of 20,778 RNA–protein pairs in 38 ms