RNA–Protein interactions for RNA: ENST00000530983.5

VPS28-213, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,337 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-213ENST00000530983 AMER1Q5JTC6 1135 aaPredicted RBP25.49■■□□□ 1.67
VPS28-213ENST00000530983 PPP2R1AP30153 589 aa25.48■■□□□ 1.67
VPS28-213ENST00000530983 STAC3Q96MF2 364 aa25.47■■□□□ 1.67
VPS28-213ENST00000530983 VWDEQ8N2E2 1590 aa25.46■■□□□ 1.67
VPS28-213ENST00000530983 INO80Q9ULG1 1556 aaPredicted RBP25.46■■□□□ 1.67
VPS28-213ENST00000530983 KIAA1210Q9ULL0 1709 aa25.45■■□□□ 1.66
VPS28-213ENST00000530983 CDCA8Q53HL2 280 aa25.45■■□□□ 1.66
VPS28-213ENST00000530983 ASXL1Q8IXJ9 1541 aa25.44■■□□□ 1.66
VPS28-213ENST00000530983 NBR1Q14596 966 aa25.44■■□□□ 1.66
VPS28-213ENST00000530983 ATP7AQ04656 1500 aa25.44■■□□□ 1.66
VPS28-213ENST00000530983 CRBNQ96SW2 442 aa25.43■■□□□ 1.66
VPS28-213ENST00000530983 PLEKHH1Q9ULM0 1364 aa25.43■■□□□ 1.66
VPS28-213ENST00000530983 ZBTB47Q9UFB7 747 aaPredicted RBP25.42■■□□□ 1.66
VPS28-213ENST00000530983 PDE4AP27815 886 aa25.42■■□□□ 1.66
VPS28-213ENST00000530983 ABCA9Q8IUA7 1624 aa25.42■■□□□ 1.66
VPS28-213ENST00000530983 MS4A1P11836 297 aa25.41■■□□□ 1.66
VPS28-213ENST00000530983 NEURL4Q96JN8 1562 aa25.4■■□□□ 1.66
VPS28-213ENST00000530983 WDR43Q15061 677 aaKnown RBP eCLIP25.4■■□□□ 1.66
VPS28-213ENST00000530983 KDM5AP29375 1690 aaKnown RBP25.4■■□□□ 1.66
VPS28-213ENST00000530983 PIK3C2GO75747 1445 aa25.4■■□□□ 1.66
VPS28-213ENST00000530983 BACH2Q9BYV9 841 aa25.4■■□□□ 1.66
VPS28-213ENST00000530983 ZNF521Q96K83 1311 aa25.39■■□□□ 1.65
VPS28-213ENST00000530983 EIF3AQ14152 1382 aaKnown RBP25.38■■□□□ 1.65
VPS28-213ENST00000530983 FANCAO15360 1455 aa25.38■■□□□ 1.65
VPS28-213ENST00000530983 NPC1L1Q9UHC9 1359 aa25.38■■□□□ 1.65
VPS28-213ENST00000530983 KANK1Q14678 1352 aa25.37■■□□□ 1.65
VPS28-213ENST00000530983 DUSP27Q5VZP5 1158 aa25.37■■□□□ 1.65
VPS28-213ENST00000530983 MROH1Q8NDA8 1641 aa25.37■■□□□ 1.65
VPS28-213ENST00000530983 C20orf194Q5TEA3 1177 aa25.37■■□□□ 1.65
VPS28-213ENST00000530983 MAP3K4Q9Y6R4 1608 aa25.36■■□□□ 1.65
VPS28-213ENST00000530983 ABCA6Q8N139 1617 aa25.35■■□□□ 1.65
VPS28-213ENST00000530983 UGGT1Q9NYU2 1555 aa25.34■■□□□ 1.65
VPS28-213ENST00000530983 NPM2Q86SE8 214 aaKnown RBP25.34■■□□□ 1.65
VPS28-213ENST00000530983 KIF3BO15066 747 aa25.33■■□□□ 1.65
VPS28-213ENST00000530983 MYOM2P54296 1465 aa25.33■■□□□ 1.65
VPS28-213ENST00000530983 IFT172Q9UG01 1749 aa25.31■■□□□ 1.64
VPS28-213ENST00000530983 KIF1BO60333 1816 aa25.31■■□□□ 1.64
VPS28-213ENST00000530983 ERVK-7P63135 1459 aa25.31■■□□□ 1.64
VPS28-213ENST00000530983 GOLGA2Q08379 1002 aa25.31■■□□□ 1.64
VPS28-213ENST00000530983 SKAP1Q86WV1 359 aa25.31■■□□□ 1.64
VPS28-213ENST00000530983 ADGRL1O94910 1474 aa25.3■■□□□ 1.64
VPS28-213ENST00000530983 CFAP70Q5T0N1 1121 aa25.29■■□□□ 1.64
VPS28-213ENST00000530983 KDM2BQ8NHM5 1336 aa25.28■■□□□ 1.64
VPS28-213ENST00000530983 EFCAB6Q5THR3 1501 aa25.28■■□□□ 1.64
VPS28-213ENST00000530983 MROH2AA6NES4 1674 aa25.28■■□□□ 1.64
VPS28-213ENST00000530983 ADGRF5Q8IZF2 1346 aa25.27■■□□□ 1.64
VPS28-213ENST00000530983 SLFN5Q08AF3 891 aa25.26■■□□□ 1.63
VPS28-213ENST00000530983 PPRC1Q5VV67 1664 aaKnown RBP25.25■■□□□ 1.63
VPS28-213ENST00000530983 CCDC146Q8IYE0 955 aa25.24■■□□□ 1.63
VPS28-213ENST00000530983 TRMT2AQ8IZ69 625 aaKnown RBP25.24■■□□□ 1.63
VPS28-213ENST00000530983 MYO3AQ8NEV4 1616 aa25.24■■□□□ 1.63
VPS28-213ENST00000530983 KIDINS220Q9ULH0 1771 aa25.23■■□□□ 1.63
VPS28-213ENST00000530983 NRXN1Q9ULB1 1477 aa25.22■■□□□ 1.63
VPS28-213ENST00000530983 SLC24A1O60721 1099 aa25.22■■□□□ 1.63
VPS28-213ENST00000530983 CARD14Q9BXL6 1004 aa25.21■■□□□ 1.63
VPS28-213ENST00000530983 SPINK5Q9NQ38 1064 aaPredicted RBP25.2■■□□□ 1.62
VPS28-213ENST00000530983 APAF1O14727 1248 aa25.19■■□□□ 1.62
VPS28-213ENST00000530983 CENPQQ7L2Z9 268 aaPredicted RBP25.19■■□□□ 1.62
VPS28-213ENST00000530983 GOLGA6L2Q8N9W4 650 aaPredicted RBP25.19■■□□□ 1.62
VPS28-213ENST00000530983 ASXL2Q76L83 1435 aa25.19■■□□□ 1.62
VPS28-213ENST00000530983 NKTRP30414 1462 aaKnown RBP25.18■■□□□ 1.62
VPS28-213ENST00000530983 LMTK2Q8IWU2 1503 aa25.18■■□□□ 1.62
VPS28-213ENST00000530983 RTL5Q5HYW3 569 aaPredicted RBP25.17■■□□□ 1.62
VPS28-213ENST00000530983 SBNO2Q9Y2G9 1366 aa25.17■■□□□ 1.62
VPS28-213ENST00000530983 ADGRB3O60242 1522 aa25.16■■□□□ 1.62
VPS28-213ENST00000530983 SETBP1Q9Y6X0 1596 aa25.14■■□□□ 1.62
VPS28-213ENST00000530983 NOS1P29475 1434 aa25.13■■□□□ 1.61
VPS28-213ENST00000530983 ZC3H13Q5T200 1668 aaKnown RBP25.11■■□□□ 1.61
VPS28-213ENST00000530983 E9PSI1 815 aa25.11■■□□□ 1.61
VPS28-213ENST00000530983 DMRT2Q9Y5R5 561 aa25.11■■□□□ 1.61
VPS28-213ENST00000530983 ZNF518AQ6AHZ1 1483 aa25.1■■□□□ 1.61
VPS28-213ENST00000530983 PPLO60437 1756 aa25.1■■□□□ 1.61
VPS28-213ENST00000530983 POLR3AO14802 1390 aaPredicted RBP25.09■■□□□ 1.61
VPS28-213ENST00000530983 CENPJQ9HC77 1338 aaPredicted RBP25.09■■□□□ 1.61
VPS28-213ENST00000530983 BCAR3O75815 825 aa25.09■■□□□ 1.61
VPS28-213ENST00000530983 LAS1LQ9Y4W2 734 aaKnown RBP25.09■■□□□ 1.61
VPS28-213ENST00000530983 SHPRHQ149N8 1683 aa25.08■■□□□ 1.61
VPS28-213ENST00000530983 QRICH2Q9H0J4 1663 aa25.08■■□□□ 1.61
VPS28-213ENST00000530983 NGEFQ8N5V2 710 aa25.08■■□□□ 1.61
VPS28-213ENST00000530983 CFAP65Q6ZU64 1925 aaKnown RBP25.07■■□□□ 1.6
VPS28-213ENST00000530983 DDRGK1Q96HY6 314 aa25.07■■□□□ 1.6
VPS28-213ENST00000530983 NPATQ14207 1427 aa25.05■■□□□ 1.6
VPS28-213ENST00000530983 ADGRB1O14514 1584 aa25.05■■□□□ 1.6
VPS28-213ENST00000530983 CFAP74Q9C0B2 1584 aa25.05■■□□□ 1.6
VPS28-213ENST00000530983 NPM1P06748 294 aaKnown RBP eCLIP25.05■■□□□ 1.6
VPS28-213ENST00000530983 NSD3Q9BZ95 1437 aa25.05■■□□□ 1.6
VPS28-213ENST00000530983 C8orf34Q49A92 452 aa25.04■■□□□ 1.6
VPS28-213ENST00000530983 FRMPD1Q5SYB0 1578 aa25.04■■□□□ 1.6
VPS28-213ENST00000530983 FAM161AQ3B820 660 aa25.03■■□□□ 1.6
VPS28-213ENST00000530983 CHGAP10645 457 aaKnown RBP25.03■■□□□ 1.6
VPS28-213ENST00000530983 TRAK1Q9UPV9 953 aa25.03■■□□□ 1.6
VPS28-213ENST00000530983 PRKCSHP14314 528 aaPredicted RBP25.02■■□□□ 1.6
VPS28-213ENST00000530983 NEFMP07197 916 aa25.01■■□□□ 1.59
VPS28-213ENST00000530983 WWC1Q8IX03 1113 aa25.01■■□□□ 1.59
VPS28-213ENST00000530983 C14orf93Q9H972 538 aaKnown RBP25.01■■□□□ 1.59
VPS28-213ENST00000530983 USP35Q9P2H5 1018 aa25.01■■□□□ 1.59
VPS28-213ENST00000530983 USP32Q8NFA0 1604 aa24.99■■□□□ 1.59
VPS28-213ENST00000530983 PPM1GO15355 546 aaPredicted RBP24.99■■□□□ 1.59
VPS28-213ENST00000530983 SLC12A5Q9H2X9 1139 aa24.99■■□□□ 1.59
VPS28-213ENST00000530983 POGZQ7Z3K3 1410 aa24.98■■□□□ 1.59
Retrieved 100 of 20,778 RNA–protein pairs in 55.6 ms