RNA–Protein interactions for RNA: ENST00000528142.5

VPS28-209, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 1,821 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-209ENST00000528142 PRKRIP1Q9H875 184 aaPredicted RBP28.64■■■□□ 2.17
VPS28-209ENST00000528142 PPP6R1Q9UPN7 881 aa28.64■■■□□ 2.17
VPS28-209ENST00000528142 PIK3C2BO00750 1634 aa28.64■■■□□ 2.17
VPS28-209ENST00000528142 KIAA1210Q9ULL0 1709 aa28.63■■■□□ 2.17
VPS28-209ENST00000528142 SCAF1Q9H7N4 1312 aaKnown RBP28.63■■■□□ 2.17
VPS28-209ENST00000528142 CHGAP10645 457 aaKnown RBP28.6■■■□□ 2.17
VPS28-209ENST00000528142 RPGRIP1LQ68CZ1 1315 aa28.6■■■□□ 2.17
VPS28-209ENST00000528142 SCAF11Q99590 1463 aaKnown RBP28.59■■■□□ 2.17
VPS28-209ENST00000528142 IQGAP1P46940 1657 aa28.59■■■□□ 2.17
VPS28-209ENST00000528142 CFAP70Q5T0N1 1121 aa28.57■■■□□ 2.16
VPS28-209ENST00000528142 FBXO31Q5XUX0 539 aaPredicted RBP28.57■■■□□ 2.16
VPS28-209ENST00000528142 SLC52A1Q9NWF4 448 aa28.57■■■□□ 2.16
VPS28-209ENST00000528142 PREX1Q8TCU6 1659 aa28.56■■■□□ 2.16
VPS28-209ENST00000528142 DISP3Q9P2K9 1392 aa28.55■■■□□ 2.16
VPS28-209ENST00000528142 IDI1Q13907 227 aa28.55■■■□□ 2.16
VPS28-209ENST00000528142 PPLO60437 1756 aa28.53■■■□□ 2.16
VPS28-209ENST00000528142 TMF1P82094 1093 aa28.52■■■□□ 2.16
VPS28-209ENST00000528142 PIK3C2GO75747 1445 aa28.51■■■□□ 2.15
VPS28-209ENST00000528142 ERVK-7P63135 1459 aa28.5■■■□□ 2.15
VPS28-209ENST00000528142 ZMYM3Q14202 1370 aa28.48■■■□□ 2.15
VPS28-209ENST00000528142 C14orf93Q9H972 538 aaKnown RBP28.47■■■□□ 2.15
VPS28-209ENST00000528142 EIF3AQ14152 1382 aaKnown RBP28.47■■■□□ 2.15
VPS28-209ENST00000528142 NEXMIFQ5QGS0 1516 aa28.46■■■□□ 2.15
VPS28-209ENST00000528142 CCDC184Q52MB2 194 aa28.46■■■□□ 2.15
VPS28-209ENST00000528142 SETBP1Q9Y6X0 1596 aa28.45■■■□□ 2.14
VPS28-209ENST00000528142 SPATA31D1Q6ZQQ2 1576 aa28.44■■■□□ 2.14
VPS28-209ENST00000528142 GTF3C3Q9Y5Q9 886 aa28.44■■■□□ 2.14
VPS28-209ENST00000528142 VGFO15240 615 aaPredicted RBP28.43■■■□□ 2.14
VPS28-209ENST00000528142 TMEM131LA2VDJ0 1609 aa28.42■■■□□ 2.14
VPS28-209ENST00000528142 ZFYVE9O95405 1425 aa28.41■■■□□ 2.14
VPS28-209ENST00000528142 ESF1Q9H501 851 aaKnown RBP28.41■■■□□ 2.14
VPS28-209ENST00000528142 FER1L4A9Z1Z3 1794 aa28.4■■■□□ 2.14
VPS28-209ENST00000528142 ADGRB1O14514 1584 aa28.39■■■□□ 2.14
VPS28-209ENST00000528142 PER1O15534 1290 aaPredicted RBP28.39■■■□□ 2.13
VPS28-209ENST00000528142 CEBPAP49715 358 aaPredicted RBP28.36■■■□□ 2.13
VPS28-209ENST00000528142 MRS2Q9HD23 443 aa28.36■■■□□ 2.13
VPS28-209ENST00000528142 CDCA8Q53HL2 280 aa28.36■■■□□ 2.13
VPS28-209ENST00000528142 MYO5BQ9ULV0 1848 aa28.35■■■□□ 2.13
VPS28-209ENST00000528142 C3P01024 1663 aa28.35■■■□□ 2.13
VPS28-209ENST00000528142 SLC24A1O60721 1099 aa28.34■■■□□ 2.13
VPS28-209ENST00000528142 NUTM2DQ5VT03 806 aaPredicted RBP28.34■■■□□ 2.13
VPS28-209ENST00000528142 KTN1Q86UP2 1357 aaKnown RBP28.34■■■□□ 2.13
VPS28-209ENST00000528142 MYO3AQ8NEV4 1616 aa28.32■■■□□ 2.12
VPS28-209ENST00000528142 ADAMTSL3P82987 1691 aa28.32■■■□□ 2.12
VPS28-209ENST00000528142 SBNO2Q9Y2G9 1366 aa28.32■■■□□ 2.12
VPS28-209ENST00000528142 PANK3Q9H999 370 aa28.32■■■□□ 2.12
VPS28-209ENST00000528142 RALBP1Q15311 655 aa28.3■■■□□ 2.12
VPS28-209ENST00000528142 TMEM132EQ6IEE7 984 aa28.29■■■□□ 2.12
VPS28-209ENST00000528142 CNGB1Q14028 1251 aaPredicted RBP28.29■■■□□ 2.12
VPS28-209ENST00000528142 CENPJQ9HC77 1338 aaPredicted RBP28.27■■■□□ 2.12
VPS28-209ENST00000528142 TRAK1Q9UPV9 953 aa28.27■■■□□ 2.12
VPS28-209ENST00000528142 RIMS1Q86UR5 1692 aaKnown RBP28.26■■■□□ 2.12
VPS28-209ENST00000528142 TNRQ92752 1358 aa28.26■■■□□ 2.12
VPS28-209ENST00000528142 PARD3Q8TEW0 1356 aa28.25■■■□□ 2.11
VPS28-209ENST00000528142 A2ML1A8K2U0 1454 aa28.25■■■□□ 2.11
VPS28-209ENST00000528142 STAG3Q9UJ98 1225 aa28.23■■■□□ 2.11
VPS28-209ENST00000528142 MYBBP1AQ9BQG0 1328 aaKnown RBP28.23■■■□□ 2.11
VPS28-209ENST00000528142 PLPPR3Q6T4P5 718 aa28.22■■■□□ 2.11
VPS28-209ENST00000528142 FAM9BQ8IZU0 186 aa28.22■■■□□ 2.11
VPS28-209ENST00000528142 HNRNPUQ00839 825 aaKnown RBP eCLIP28.21■■■□□ 2.11
VPS28-209ENST00000528142 KDM5AP29375 1690 aaKnown RBP28.19■■■□□ 2.1
VPS28-209ENST00000528142 ASXL1Q8IXJ9 1541 aa28.18■■■□□ 2.1
VPS28-209ENST00000528142 MYOM1P52179 1685 aa28.17■■■□□ 2.1
VPS28-209ENST00000528142 BRD4O60885 1362 aaPredicted RBP28.17■■■□□ 2.1
VPS28-209ENST00000528142 RIMS2Q9UQ26 1411 aa28.15■■■□□ 2.1
VPS28-209ENST00000528142 PNISRQ8TF01 805 aaKnown RBP28.14■■■□□ 2.1
VPS28-209ENST00000528142 UBR1Q8IWV7 1749 aa28.14■■■□□ 2.09
VPS28-209ENST00000528142 TMC1Q8TDI8 760 aa28.13■■■□□ 2.09
VPS28-209ENST00000528142 QRICH2Q9H0J4 1663 aa28.13■■■□□ 2.09
VPS28-209ENST00000528142 CC2D1BQ5T0F9 858 aaKnown RBP28.13■■■□□ 2.09
VPS28-209ENST00000528142 ARHGEF28Q8N1W1 1705 aaKnown RBP28.12■■■□□ 2.09
VPS28-209ENST00000528142 ALKQ9UM73 1620 aa28.11■■■□□ 2.09
VPS28-209ENST00000528142 NLRP13Q86W25 1043 aa28.11■■■□□ 2.09
VPS28-209ENST00000528142 KNSTRNQ9Y448 316 aa28.11■■■□□ 2.09
VPS28-209ENST00000528142 AMER1Q5JTC6 1135 aaPredicted RBP28.11■■■□□ 2.09
VPS28-209ENST00000528142 NLRP1Q9C000 1473 aa28.11■■■□□ 2.09
VPS28-209ENST00000528142 YTHDC2Q9H6S0 1430 aaKnown RBP28.07■■■□□ 2.08
VPS28-209ENST00000528142 PUS7Q96PZ0 661 aaKnown RBP28.07■■■□□ 2.08
VPS28-209ENST00000528142 SENP3Q9H4L4 574 aaPredicted RBP28.07■■■□□ 2.08
VPS28-209ENST00000528142 NPC1L1Q9UHC9 1359 aa28.07■■■□□ 2.08
VPS28-209ENST00000528142 LRPPRCP42704 1394 aaKnown RBP28.05■■■□□ 2.08
VPS28-209ENST00000528142 ABCF1Q8NE71 845 aaKnown RBP eCLIP28.05■■■□□ 2.08
VPS28-209ENST00000528142 STK26Q9P289 416 aa28.05■■■□□ 2.08
VPS28-209ENST00000528142 PTPRMP28827 1452 aa28.05■■■□□ 2.08
VPS28-209ENST00000528142 ZBED9Q6R2W3 1325 aa28.03■■■□□ 2.08
VPS28-209ENST00000528142 CARD14Q9BXL6 1004 aa28.02■■■□□ 2.08
VPS28-209ENST00000528142 EVC2Q86UK5 1308 aa28.02■■■□□ 2.08
VPS28-209ENST00000528142 TULP4Q9NRJ4 1543 aa28.02■■■□□ 2.08
VPS28-209ENST00000528142 TMEM2Q9UHN6 1383 aa28.01■■■□□ 2.07
VPS28-209ENST00000528142 HDGFP51858 240 aaKnown RBP27.99■■■□□ 2.07
VPS28-209ENST00000528142 SETD1AO15047 1707 aaKnown RBP27.97■■■□□ 2.07
VPS28-209ENST00000528142 NRXN3Q9Y4C0 1643 aa27.97■■■□□ 2.07
VPS28-209ENST00000528142 PRAM1Q96QH2 718 aa27.97■■■□□ 2.07
VPS28-209ENST00000528142 CEP170BQ9Y4F5 1589 aaPredicted RBP27.96■■■□□ 2.07
VPS28-209ENST00000528142 SLC12A5Q9H2X9 1139 aa27.96■■■□□ 2.07
VPS28-209ENST00000528142 LTKP29376 864 aa27.95■■■□□ 2.06
VPS28-209ENST00000528142 SAFB2Q14151 953 aaKnown RBP eCLIP27.95■■■□□ 2.06
VPS28-209ENST00000528142 DLC1Q96QB1 1528 aa27.94■■■□□ 2.06
VPS28-209ENST00000528142 PPP2R1AP30153 589 aa27.94■■■□□ 2.06
VPS28-209ENST00000528142 ARHGAP23Q9P227 1491 aa27.94■■■□□ 2.06
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms