RNA–Protein interactions for RNA: ENST00000526669.6

CD44-224, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5 BASIC

Gene CD44, Length 870 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-224ENST00000526669 SLIT1O75093 1534 aa19.89■□□□□ 0.77
CD44-224ENST00000526669 ARHGAP23Q9P227 1491 aa19.88■□□□□ 0.77
CD44-224ENST00000526669 THEMISQ8N1K5 641 aaPredicted RBP19.88■□□□□ 0.77
CD44-224ENST00000526669 SENP3Q9H4L4 574 aaPredicted RBP19.87■□□□□ 0.77
CD44-224ENST00000526669 IQGAP1P46940 1657 aa19.87■□□□□ 0.77
CD44-224ENST00000526669 ZFYVE9O95405 1425 aa19.86■□□□□ 0.77
CD44-224ENST00000526669 TMEM2Q9UHN6 1383 aa19.86■□□□□ 0.77
CD44-224ENST00000526669 TONSLQ96HA7 1378 aa19.85■□□□□ 0.77
CD44-224ENST00000526669 KDM2AQ9Y2K7 1162 aa19.83■□□□□ 0.77
CD44-224ENST00000526669 SCAF11Q99590 1463 aaKnown RBP19.82■□□□□ 0.76
CD44-224ENST00000526669 LTKP29376 864 aa19.82■□□□□ 0.76
CD44-224ENST00000526669 DCAF11Q8TEB1 546 aa19.82■□□□□ 0.76
CD44-224ENST00000526669 L3MBTL2Q969R5 705 aa19.82■□□□□ 0.76
CD44-224ENST00000526669 NCKAP5LQ9HCH0 1330 aa19.81■□□□□ 0.76
CD44-224ENST00000526669 NRXN3Q9Y4C0 1643 aa19.81■□□□□ 0.76
CD44-224ENST00000526669 PPP1R15AO75807 674 aaPredicted RBP19.81■□□□□ 0.76
CD44-224ENST00000526669 TXNDC2Q86VQ3 553 aa19.81■□□□□ 0.76
CD44-224ENST00000526669 RPGRIP1LQ68CZ1 1315 aa19.8■□□□□ 0.76
CD44-224ENST00000526669 EID1Q9Y6B2 187 aa19.79■□□□□ 0.76
CD44-224ENST00000526669 SETD1AO15047 1707 aaKnown RBP19.79■□□□□ 0.76
CD44-224ENST00000526669 MYOM2P54296 1465 aa19.79■□□□□ 0.76
CD44-224ENST00000526669 ANKLE2Q86XL3 938 aa19.78■□□□□ 0.76
CD44-224ENST00000526669 ADGRF5Q8IZF2 1346 aa19.77■□□□□ 0.76
CD44-224ENST00000526669 ABCF1Q8NE71 845 aaKnown RBP eCLIP19.77■□□□□ 0.76
CD44-224ENST00000526669 HDGFP51858 240 aaKnown RBP19.75■□□□□ 0.75
CD44-224ENST00000526669 BCANQ96GW7 911 aa19.75■□□□□ 0.75
CD44-224ENST00000526669 TRPM1Q7Z4N2 1603 aa19.74■□□□□ 0.75
CD44-224ENST00000526669 NPHP4O75161 1426 aaPredicted RBP19.74■□□□□ 0.75
CD44-224ENST00000526669 SETBP1Q9Y6X0 1596 aa19.74■□□□□ 0.75
CD44-224ENST00000526669 NRXN1Q9ULB1 1477 aa19.73■□□□□ 0.75
CD44-224ENST00000526669 PLEKHG1Q9ULL1 1385 aa19.73■□□□□ 0.75
CD44-224ENST00000526669 VGFO15240 615 aaPredicted RBP19.73■□□□□ 0.75
CD44-224ENST00000526669 KIAA1210Q9ULL0 1709 aa19.73■□□□□ 0.75
CD44-224ENST00000526669 LAMC1P11047 1609 aa19.73■□□□□ 0.75
CD44-224ENST00000526669 ALKQ9UM73 1620 aa19.73■□□□□ 0.75
CD44-224ENST00000526669 MED14O60244 1454 aa19.72■□□□□ 0.75
CD44-224ENST00000526669 PIK3C2GO75747 1445 aa19.71■□□□□ 0.75
CD44-224ENST00000526669 PRAG1Q86YV5 1406 aa19.71■□□□□ 0.75
CD44-224ENST00000526669 CHD2O14647 1828 aaKnown RBP19.69■□□□□ 0.74
CD44-224ENST00000526669 DIP2AQ14689 1571 aa19.69■□□□□ 0.74
CD44-224ENST00000526669 ADAMTS13Q76LX8 1427 aa19.68■□□□□ 0.74
CD44-224ENST00000526669 NBPF8Q3BBV2 869 aa19.68■□□□□ 0.74
CD44-224ENST00000526669 SLC26A8Q96RN1 970 aa19.68■□□□□ 0.74
CD44-224ENST00000526669 ASXL1Q8IXJ9 1541 aa19.67■□□□□ 0.74
CD44-224ENST00000526669 TIMELESSQ9UNS1 1208 aa19.67■□□□□ 0.74
CD44-224ENST00000526669 STRCP1A6NGW2 1772 aa19.67■□□□□ 0.74
CD44-224ENST00000526669 CFAP70Q5T0N1 1121 aa19.65■□□□□ 0.74
CD44-224ENST00000526669 STAC3Q96MF2 364 aa19.64■□□□□ 0.73
CD44-224ENST00000526669 KNDC1Q76NI1 1749 aa19.61■□□□□ 0.73
CD44-224ENST00000526669 RALGAPBQ86X10 1494 aa19.6■□□□□ 0.73
CD44-224ENST00000526669 METP08581 1390 aa19.6■□□□□ 0.73
CD44-224ENST00000526669 NBPF1Q3BBV0 1214 aa19.6■□□□□ 0.73
CD44-224ENST00000526669 TMEM132EQ6IEE7 984 aa19.6■□□□□ 0.73
CD44-224ENST00000526669 C14orf93Q9H972 538 aaKnown RBP19.6■□□□□ 0.73
CD44-224ENST00000526669 ADGRB1O14514 1584 aa19.6■□□□□ 0.73
CD44-224ENST00000526669 XRN1Q8IZH2 1706 aaKnown RBP19.59■□□□□ 0.73
CD44-224ENST00000526669 ARHGEF28Q8N1W1 1705 aaKnown RBP19.59■□□□□ 0.73
CD44-224ENST00000526669 TBX22Q9Y458 520 aa19.58■□□□□ 0.72
CD44-224ENST00000526669 PTPRUQ92729 1446 aa19.58■□□□□ 0.72
CD44-224ENST00000526669 NWD1Q149M9 1564 aa19.57■□□□□ 0.72
CD44-224ENST00000526669 ROCK2O75116 1388 aaKnown RBP19.57■□□□□ 0.72
CD44-224ENST00000526669 DMRT2Q9Y5R5 561 aa19.56■□□□□ 0.72
CD44-224ENST00000526669 XIRP1Q702N8 1843 aaKnown RBP19.55■□□□□ 0.72
CD44-224ENST00000526669 YTHDC2Q9H6S0 1430 aaKnown RBP19.54■□□□□ 0.72
CD44-224ENST00000526669 STK26Q9P289 416 aa19.54■□□□□ 0.72
CD44-224ENST00000526669 ZEB1P37275 1124 aaPredicted RBP19.53■□□□□ 0.72
CD44-224ENST00000526669 ZNF335Q9H4Z2 1342 aaPredicted RBP19.52■□□□□ 0.72
CD44-224ENST00000526669 CPS1P31327 1500 aa19.51■□□□□ 0.71
CD44-224ENST00000526669 PIK3R4Q99570 1358 aa19.51■□□□□ 0.71
CD44-224ENST00000526669 QRICH2Q9H0J4 1663 aa19.51■□□□□ 0.71
CD44-224ENST00000526669 LRPPRCP42704 1394 aaKnown RBP19.5■□□□□ 0.71
CD44-224ENST00000526669 CARD11Q9BXL7 1154 aa19.5■□□□□ 0.71
CD44-224ENST00000526669 TRAK1Q9UPV9 953 aa19.5■□□□□ 0.71
CD44-224ENST00000526669 AMOTL2Q9Y2J4 779 aa19.5■□□□□ 0.71
CD44-224ENST00000526669 GPRASP1Q5JY77 1395 aa19.49■□□□□ 0.71
CD44-224ENST00000526669 KCNA6P17658 529 aa19.48■□□□□ 0.71
CD44-224ENST00000526669 NALCNQ8IZF0 1738 aa19.47■□□□□ 0.71
CD44-224ENST00000526669 DLC1Q96QB1 1528 aa19.46■□□□□ 0.71
CD44-224ENST00000526669 NKTRP30414 1462 aaKnown RBP19.46■□□□□ 0.71
CD44-224ENST00000526669 SIPA1L2Q9P2F8 1722 aaPredicted RBP19.45■□□□□ 0.7
CD44-224ENST00000526669 TECPR2O15040 1411 aa19.45■□□□□ 0.7
CD44-224ENST00000526669 LTBP4Q8N2S1 1624 aa19.45■□□□□ 0.7
CD44-224ENST00000526669 ABCC11Q96J66 1382 aa19.44■□□□□ 0.7
CD44-224ENST00000526669 ROBO2Q9HCK4 1378 aa19.44■□□□□ 0.7
CD44-224ENST00000526669 RBM33Q96EV2 1170 aaKnown RBP19.44■□□□□ 0.7
CD44-224ENST00000526669 PLEKHH1Q9ULM0 1364 aa19.44■□□□□ 0.7
CD44-224ENST00000526669 PTCH1Q13635 1447 aa19.43■□□□□ 0.7
CD44-224ENST00000526669 SAFB2Q14151 953 aaKnown RBP eCLIP19.43■□□□□ 0.7
CD44-224ENST00000526669 WAPLQ7Z5K2 1190 aa19.42■□□□□ 0.7
CD44-224ENST00000526669 USP47Q96K76 1375 aa19.42■□□□□ 0.7
CD44-224ENST00000526669 PROSER2Q86WR7 435 aaPredicted RBP19.41■□□□□ 0.7
CD44-224ENST00000526669 LRRC7Q96NW7 1537 aa19.41■□□□□ 0.7
CD44-224ENST00000526669 PRAM1Q96QH2 718 aa19.4■□□□□ 0.7
CD44-224ENST00000526669 RGPD8O14715 1765 aaPredicted RBP19.39■□□□□ 0.7
CD44-224ENST00000526669 POGKQ9P215 609 aa19.39■□□□□ 0.69
CD44-224ENST00000526669 EIF3AQ14152 1382 aaKnown RBP19.39■□□□□ 0.69
CD44-224ENST00000526669 FAM135BQ49AJ0 1406 aa19.38■□□□□ 0.69
CD44-224ENST00000526669 CENPJQ9HC77 1338 aaPredicted RBP19.37■□□□□ 0.69
CD44-224ENST00000526669 TMEM94Q12767 1356 aa19.36■□□□□ 0.69
CD44-224ENST00000526669 HIRIP3Q9BW71 556 aaPredicted RBP19.36■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 65.2 ms