RNA–Protein interactions for RNA: ENST00000526025.1

CD44-222, Transcript of CD44 molecule (Indian blood group), human

TSL 2 BASIC

Gene CD44, Length 1,052 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-222	ENST00000526025	NEXMIF	Q5QGS0	1516 aa		30.34	■■■□□ 2.45
CD44-222	ENST00000526025	DMRT2	Q9Y5R5	561 aa		30.34	■■■□□ 2.45
CD44-222	ENST00000526025	PPL	O60437	1756 aa		30.33	■■■□□ 2.45
CD44-222	ENST00000526025	RPGRIP1L	Q68CZ1	1315 aa		30.33	■■■□□ 2.45
CD44-222	ENST00000526025	ABCF1	Q8NE71	845 aa	Known RBP eCLIP	30.33	■■■□□ 2.45
CD44-222	ENST00000526025	IFT172	Q9UG01	1749 aa		30.33	■■■□□ 2.45
CD44-222	ENST00000526025	IQGAP1	P46940	1657 aa		30.33	■■■□□ 2.45
CD44-222	ENST00000526025	NCKAP5L	Q9HCH0	1330 aa		30.31	■■■□□ 2.44
CD44-222	ENST00000526025	TXNDC2	Q86VQ3	553 aa		30.31	■■■□□ 2.44
CD44-222	ENST00000526025	LTK	P29376	864 aa		30.3	■■■□□ 2.44
CD44-222	ENST00000526025	NPHP4	O75161	1426 aa	Predicted RBP	30.3	■■■□□ 2.44
CD44-222	ENST00000526025	ZNF326	Q5BKZ1	582 aa	Known RBP	30.28	■■■□□ 2.44
CD44-222	ENST00000526025	PLEKHG1	Q9ULL1	1385 aa		30.26	■■■□□ 2.43
CD44-222	ENST00000526025	CLSPN	Q9HAW4	1339 aa		30.22	■■■□□ 2.43
CD44-222	ENST00000526025	PPP1R15A	O75807	674 aa	Predicted RBP	30.21	■■■□□ 2.43
CD44-222	ENST00000526025	SETBP1	Q9Y6X0	1596 aa		30.2	■■■□□ 2.43
CD44-222	ENST00000526025	DIP2A	Q14689	1571 aa		30.2	■■■□□ 2.42
CD44-222	ENST00000526025	VGF	O15240	615 aa	Predicted RBP	30.19	■■■□□ 2.42
CD44-222	ENST00000526025	MYOM2	P54296	1465 aa		30.19	■■■□□ 2.42
CD44-222	ENST00000526025	RGL3	Q3MIN7	710 aa		30.17	■■■□□ 2.42
CD44-222	ENST00000526025	STAC3	Q96MF2	364 aa		30.17	■■■□□ 2.42
CD44-222	ENST00000526025	NRXN3	Q9Y4C0	1643 aa		30.16	■■■□□ 2.42
CD44-222	ENST00000526025	NRXN1	Q9ULB1	1477 aa		30.12	■■■□□ 2.41
CD44-222	ENST00000526025	NUTM2D	Q5VT03	806 aa	Predicted RBP	30.11	■■■□□ 2.41
CD44-222	ENST00000526025	SIN3A	Q96ST3	1273 aa		30.11	■■■□□ 2.41
CD44-222	ENST00000526025	ADAMTS13	Q76LX8	1427 aa		30.11	■■■□□ 2.41
CD44-222	ENST00000526025	SETD1A	O15047	1707 aa	Known RBP	30.08	■■■□□ 2.41
CD44-222	ENST00000526025	PIK3C2G	O75747	1445 aa		30.07	■■■□□ 2.4
CD44-222	ENST00000526025	TBX22	Q9Y458	520 aa		30.07	■■■□□ 2.4
CD44-222	ENST00000526025	LAMC1	P11047	1609 aa		30.06	■■■□□ 2.4
CD44-222	ENST00000526025	PIK3R4	Q99570	1358 aa		30.05	■■■□□ 2.4
CD44-222	ENST00000526025	ADGRF5	Q8IZF2	1346 aa		30.04	■■■□□ 2.4
CD44-222	ENST00000526025	ALK	Q9UM73	1620 aa		30.04	■■■□□ 2.4
CD44-222	ENST00000526025	CHD2	O14647	1828 aa	Known RBP	30.03	■■■□□ 2.4
CD44-222	ENST00000526025	BCAN	Q96GW7	911 aa		30.03	■■■□□ 2.4
CD44-222	ENST00000526025	NEUROD1	Q13562	356 aa		30.02	■■■□□ 2.4
CD44-222	ENST00000526025	CCER1	Q8TC90	406 aa	Predicted RBP	30.02	■■■□□ 2.4
CD44-222	ENST00000526025	NWD1	Q149M9	1564 aa		30.02	■■■□□ 2.4
CD44-222	ENST00000526025	DCAF11	Q8TEB1	546 aa		30.01	■■■□□ 2.39
CD44-222	ENST00000526025	SLC26A8	Q96RN1	970 aa		30.01	■■■□□ 2.39
CD44-222	ENST00000526025	LTBP4	Q8N2S1	1624 aa		29.99	■■■□□ 2.39
CD44-222	ENST00000526025	STRCP1	A6NGW2	1772 aa		29.98	■■■□□ 2.39
CD44-222	ENST00000526025	CPS1	P31327	1500 aa		29.97	■■■□□ 2.39
CD44-222	ENST00000526025	KIAA1210	Q9ULL0	1709 aa		29.97	■■■□□ 2.39
CD44-222	ENST00000526025	L3MBTL2	Q969R5	705 aa		29.97	■■■□□ 2.39
CD44-222	ENST00000526025	TONSL	Q96HA7	1378 aa		29.96	■■■□□ 2.39
CD44-222	ENST00000526025	ZNF335	Q9H4Z2	1342 aa	Predicted RBP	29.96	■■■□□ 2.39
CD44-222	ENST00000526025	TIMELESS	Q9UNS1	1208 aa		29.93	■■■□□ 2.38
CD44-222	ENST00000526025	PRAG1	Q86YV5	1406 aa		29.93	■■■□□ 2.38
CD44-222	ENST00000526025	XRN1	Q8IZH2	1706 aa	Known RBP	29.93	■■■□□ 2.38
CD44-222	ENST00000526025	NKTR	P30414	1462 aa	Known RBP	29.93	■■■□□ 2.38
CD44-222	ENST00000526025	KCNA6	P17658	529 aa		29.92	■■■□□ 2.38
CD44-222	ENST00000526025	C14orf93	Q9H972	538 aa	Known RBP	29.92	■■■□□ 2.38
CD44-222	ENST00000526025	KDM2A	Q9Y2K7	1162 aa		29.92	■■■□□ 2.38
CD44-222	ENST00000526025	MET	P08581	1390 aa		29.9	■■■□□ 2.38
CD44-222	ENST00000526025	SENP3	Q9H4L4	574 aa	Predicted RBP	29.89	■■■□□ 2.38
CD44-222	ENST00000526025	ASXL1	Q8IXJ9	1541 aa		29.88	■■■□□ 2.37
CD44-222	ENST00000526025	PTPRU	Q92729	1446 aa		29.87	■■■□□ 2.37
CD44-222	ENST00000526025	KNDC1	Q76NI1	1749 aa		29.85	■■■□□ 2.37
CD44-222	ENST00000526025	IQSEC2	Q5JU85	1478 aa		29.85	■■■□□ 2.37
CD44-222	ENST00000526025	ADGRB1	O14514	1584 aa		29.84	■■■□□ 2.37
CD44-222	ENST00000526025	CFAP70	Q5T0N1	1121 aa		29.83	■■■□□ 2.37
CD44-222	ENST00000526025	TRPM1	Q7Z4N2	1603 aa		29.82	■■■□□ 2.36
CD44-222	ENST00000526025	LRRC7	Q96NW7	1537 aa		29.81	■■■□□ 2.36
CD44-222	ENST00000526025	TECPR2	O15040	1411 aa		29.8	■■■□□ 2.36
CD44-222	ENST00000526025	PTCH1	Q13635	1447 aa		29.8	■■■□□ 2.36
CD44-222	ENST00000526025	LRPPRC	P42704	1394 aa	Known RBP	29.8	■■■□□ 2.36
CD44-222	ENST00000526025	AMOTL2	Q9Y2J4	779 aa		29.8	■■■□□ 2.36
CD44-222	ENST00000526025	XIRP1	Q702N8	1843 aa	Known RBP	29.79	■■■□□ 2.36
CD44-222	ENST00000526025	YTHDC2	Q9H6S0	1430 aa	Known RBP	29.78	■■■□□ 2.36
CD44-222	ENST00000526025	ABCC11	Q96J66	1382 aa		29.77	■■■□□ 2.36
CD44-222	ENST00000526025	NCOA3	Q9Y6Q9	1424 aa		29.77	■■■□□ 2.36
CD44-222	ENST00000526025	DLC1	Q96QB1	1528 aa		29.74	■■■□□ 2.35
CD44-222	ENST00000526025	CERK	Q8TCT0	537 aa		29.73	■■■□□ 2.35
CD44-222	ENST00000526025	TMEM132E	Q6IEE7	984 aa		29.72	■■■□□ 2.35
CD44-222	ENST00000526025	SIRT1	Q96EB6	747 aa		29.71	■■■□□ 2.35
CD44-222	ENST00000526025	RALGAPB	Q86X10	1494 aa		29.71	■■■□□ 2.35
CD44-222	ENST00000526025	TMEM94	Q12767	1356 aa		29.7	■■■□□ 2.35
CD44-222	ENST00000526025	PROSER2	Q86WR7	435 aa	Predicted RBP	29.7	■■■□□ 2.35
CD44-222	ENST00000526025	FAM135B	Q49AJ0	1406 aa		29.7	■■■□□ 2.34
CD44-222	ENST00000526025	NBPF8	Q3BBV2	869 aa		29.69	■■■□□ 2.34
CD44-222	ENST00000526025	GPRASP1	Q5JY77	1395 aa		29.68	■■■□□ 2.34
CD44-222	ENST00000526025	ROBO2	Q9HCK4	1378 aa		29.68	■■■□□ 2.34
CD44-222	ENST00000526025	ARHGEF28	Q8N1W1	1705 aa	Known RBP	29.66	■■■□□ 2.34
CD44-222	ENST00000526025	NBPF1	Q3BBV0	1214 aa		29.64	■■■□□ 2.34
CD44-222	ENST00000526025	ROCK2	O75116	1388 aa	Known RBP	29.64	■■■□□ 2.33
CD44-222	ENST00000526025	STK26	Q9P289	416 aa		29.62	■■■□□ 2.33
CD44-222	ENST00000526025	NALCN	Q8IZF0	1738 aa		29.62	■■■□□ 2.33
CD44-222	ENST00000526025	ADGRL3	Q9HAR2	1447 aa		29.61	■■■□□ 2.33
CD44-222	ENST00000526025	DCC	P43146	1447 aa		29.59	■■■□□ 2.33
CD44-222	ENST00000526025	MSH6	P52701	1360 aa		29.58	■■■□□ 2.33
CD44-222	ENST00000526025	SIPA1L2	Q9P2F8	1722 aa	Predicted RBP	29.58	■■■□□ 2.33
CD44-222	ENST00000526025	C19orf44	Q9H6X5	657 aa		29.55	■■■□□ 2.32
CD44-222	ENST00000526025	TRAK1	Q9UPV9	953 aa		29.55	■■■□□ 2.32
CD44-222	ENST00000526025	ADGRB2	O60241	1585 aa		29.53	■■■□□ 2.32
CD44-222	ENST00000526025	CDC42BPG	Q6DT37	1551 aa		29.53	■■■□□ 2.32
CD44-222	ENST00000526025	RBM33	Q96EV2	1170 aa	Known RBP	29.53	■■■□□ 2.32
CD44-222	ENST00000526025	PLEKHH1	Q9ULM0	1364 aa		29.52	■■■□□ 2.32
CD44-222	ENST00000526025	WAPL	Q7Z5K2	1190 aa		29.51	■■■□□ 2.31
CD44-222	ENST00000526025	C14orf37	Q86TY3	774 aa		29.51	■■■□□ 2.31

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