RNA–Protein interactions for RNA: ENST00000520755.5

LSM1-203, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best) BASIC

Gene LSM1, Length 975 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-203ENST00000520755 ANKLE2Q86XL3 938 aa22.33■■□□□ 1.17
LSM1-203ENST00000520755 RIMS2Q9UQ26 1411 aa22.31■■□□□ 1.16
LSM1-203ENST00000520755 SCAF11Q99590 1463 aaKnown RBP22.31■■□□□ 1.16
LSM1-203ENST00000520755 TXNDC2Q86VQ3 553 aa22.31■■□□□ 1.16
LSM1-203ENST00000520755 EID1Q9Y6B2 187 aa22.3■■□□□ 1.16
LSM1-203ENST00000520755 ZFYVE9O95405 1425 aa22.3■■□□□ 1.16
LSM1-203ENST00000520755 LTKP29376 864 aa22.29■■□□□ 1.16
LSM1-203ENST00000520755 IQGAP1P46940 1657 aa22.29■■□□□ 1.16
LSM1-203ENST00000520755 NUTM2DQ5VT03 806 aaPredicted RBP22.28■■□□□ 1.16
LSM1-203ENST00000520755 NEXMIFQ5QGS0 1516 aa22.27■■□□□ 1.16
LSM1-203ENST00000520755 RGL3Q3MIN7 710 aa22.27■■□□□ 1.16
LSM1-203ENST00000520755 NPHP4O75161 1426 aaPredicted RBP22.26■■□□□ 1.15
LSM1-203ENST00000520755 PPP1R15AO75807 674 aaPredicted RBP22.26■■□□□ 1.15
LSM1-203ENST00000520755 HDGFP51858 240 aaKnown RBP22.25■■□□□ 1.15
LSM1-203ENST00000520755 MED14O60244 1454 aa22.25■■□□□ 1.15
LSM1-203ENST00000520755 NEUROD1Q13562 356 aa22.24■■□□□ 1.15
LSM1-203ENST00000520755 SENP3Q9H4L4 574 aaPredicted RBP22.24■■□□□ 1.15
LSM1-203ENST00000520755 DMRT2Q9Y5R5 561 aa22.24■■□□□ 1.15
LSM1-203ENST00000520755 ABCF1Q8NE71 845 aaKnown RBP eCLIP22.23■■□□□ 1.15
LSM1-203ENST00000520755 BCANQ96GW7 911 aa22.2■■□□□ 1.14
LSM1-203ENST00000520755 RPGRIP1LQ68CZ1 1315 aa22.2■■□□□ 1.14
LSM1-203ENST00000520755 PLEKHG1Q9ULL1 1385 aa22.19■■□□□ 1.14
LSM1-203ENST00000520755 TONSLQ96HA7 1378 aa22.17■■□□□ 1.14
LSM1-203ENST00000520755 MYOM2P54296 1465 aa22.15■■□□□ 1.14
LSM1-203ENST00000520755 VGFO15240 615 aaPredicted RBP22.15■■□□□ 1.14
LSM1-203ENST00000520755 NRXN3Q9Y4C0 1643 aa22.15■■□□□ 1.14
LSM1-203ENST00000520755 SLC26A8Q96RN1 970 aa22.14■■□□□ 1.13
LSM1-203ENST00000520755 SETBP1Q9Y6X0 1596 aa22.13■■□□□ 1.13
LSM1-203ENST00000520755 L3MBTL2Q969R5 705 aa22.13■■□□□ 1.13
LSM1-203ENST00000520755 SETD1AO15047 1707 aaKnown RBP22.12■■□□□ 1.13
LSM1-203ENST00000520755 NRXN1Q9ULB1 1477 aa22.12■■□□□ 1.13
LSM1-203ENST00000520755 ADGRF5Q8IZF2 1346 aa22.11■■□□□ 1.13
LSM1-203ENST00000520755 TRPM1Q7Z4N2 1603 aa22.11■■□□□ 1.13
LSM1-203ENST00000520755 DIP2AQ14689 1571 aa22.1■■□□□ 1.13
LSM1-203ENST00000520755 ADAMTS13Q76LX8 1427 aa22.1■■□□□ 1.13
LSM1-203ENST00000520755 DCAF11Q8TEB1 546 aa22.1■■□□□ 1.13
LSM1-203ENST00000520755 KDM2AQ9Y2K7 1162 aa22.1■■□□□ 1.13
LSM1-203ENST00000520755 KIAA1210Q9ULL0 1709 aa22.09■■□□□ 1.13
LSM1-203ENST00000520755 ZNF335Q9H4Z2 1342 aaPredicted RBP22.07■■□□□ 1.12
LSM1-203ENST00000520755 TIMELESSQ9UNS1 1208 aa22.07■■□□□ 1.12
LSM1-203ENST00000520755 STRCP1A6NGW2 1772 aa22.07■■□□□ 1.12
LSM1-203ENST00000520755 PRAG1Q86YV5 1406 aa22.06■■□□□ 1.12
LSM1-203ENST00000520755 LAMC1P11047 1609 aa22.06■■□□□ 1.12
LSM1-203ENST00000520755 ALKQ9UM73 1620 aa22.06■■□□□ 1.12
LSM1-203ENST00000520755 PIK3C2GO75747 1445 aa22.06■■□□□ 1.12
LSM1-203ENST00000520755 TBX22Q9Y458 520 aa22.05■■□□□ 1.12
LSM1-203ENST00000520755 CHD2O14647 1828 aaKnown RBP22.05■■□□□ 1.12
LSM1-203ENST00000520755 LTBP4Q8N2S1 1624 aa22.01■■□□□ 1.11
LSM1-203ENST00000520755 ASXL1Q8IXJ9 1541 aa22.01■■□□□ 1.11
LSM1-203ENST00000520755 STAC3Q96MF2 364 aa22■■□□□ 1.11
LSM1-203ENST00000520755 METP08581 1390 aa21.99■■□□□ 1.11
LSM1-203ENST00000520755 NWD1Q149M9 1564 aa21.99■■□□□ 1.11
LSM1-203ENST00000520755 RALGAPBQ86X10 1494 aa21.99■■□□□ 1.11
LSM1-203ENST00000520755 NBPF8Q3BBV2 869 aa21.99■■□□□ 1.11
LSM1-203ENST00000520755 PIK3R4Q99570 1358 aa21.98■■□□□ 1.11
LSM1-203ENST00000520755 CPS1P31327 1500 aa21.96■■□□□ 1.11
LSM1-203ENST00000520755 KCNA6P17658 529 aa21.96■■□□□ 1.11
LSM1-203ENST00000520755 ZEB1P37275 1124 aaPredicted RBP21.96■■□□□ 1.11
LSM1-203ENST00000520755 CFAP70Q5T0N1 1121 aa21.96■■□□□ 1.11
LSM1-203ENST00000520755 PTPRUQ92729 1446 aa21.96■■□□□ 1.11
LSM1-203ENST00000520755 ADGRB1O14514 1584 aa21.95■■□□□ 1.11
LSM1-203ENST00000520755 XRN1Q8IZH2 1706 aaKnown RBP21.95■■□□□ 1.1
LSM1-203ENST00000520755 C14orf93Q9H972 538 aaKnown RBP21.95■■□□□ 1.1
LSM1-203ENST00000520755 TMEM132EQ6IEE7 984 aa21.93■■□□□ 1.1
LSM1-203ENST00000520755 AMOTL2Q9Y2J4 779 aa21.93■■□□□ 1.1
LSM1-203ENST00000520755 NKTRP30414 1462 aaKnown RBP21.92■■□□□ 1.1
LSM1-203ENST00000520755 XIRP1Q702N8 1843 aaKnown RBP21.91■■□□□ 1.1
LSM1-203ENST00000520755 KNDC1Q76NI1 1749 aa21.91■■□□□ 1.1
LSM1-203ENST00000520755 LRRC7Q96NW7 1537 aa21.9■■□□□ 1.1
LSM1-203ENST00000520755 ARHGEF28Q8N1W1 1705 aaKnown RBP21.89■■□□□ 1.1
LSM1-203ENST00000520755 PROSER2Q86WR7 435 aaPredicted RBP21.88■■□□□ 1.09
LSM1-203ENST00000520755 STK26Q9P289 416 aa21.88■■□□□ 1.09
LSM1-203ENST00000520755 CERKQ8TCT0 537 aa21.87■■□□□ 1.09
LSM1-203ENST00000520755 YTHDC2Q9H6S0 1430 aaKnown RBP21.87■■□□□ 1.09
LSM1-203ENST00000520755 GPRASP1Q5JY77 1395 aa21.87■■□□□ 1.09
LSM1-203ENST00000520755 RBM33Q96EV2 1170 aaKnown RBP21.86■■□□□ 1.09
LSM1-203ENST00000520755 LRPPRCP42704 1394 aaKnown RBP21.86■■□□□ 1.09
LSM1-203ENST00000520755 TMEM94Q12767 1356 aa21.84■■□□□ 1.09
LSM1-203ENST00000520755 NBPF1Q3BBV0 1214 aa21.83■■□□□ 1.09
LSM1-203ENST00000520755 ROBO2Q9HCK4 1378 aa21.83■■□□□ 1.08
LSM1-203ENST00000520755 PTCH1Q13635 1447 aa21.82■■□□□ 1.08
LSM1-203ENST00000520755 ROCK2O75116 1388 aaKnown RBP21.82■■□□□ 1.08
LSM1-203ENST00000520755 ABCC11Q96J66 1382 aa21.81■■□□□ 1.08
LSM1-203ENST00000520755 IQSEC2Q5JU85 1478 aa21.81■■□□□ 1.08
LSM1-203ENST00000520755 TECPR2O15040 1411 aa21.8■■□□□ 1.08
LSM1-203ENST00000520755 C14orf37Q86TY3 774 aa21.79■■□□□ 1.08
LSM1-203ENST00000520755 TRAK1Q9UPV9 953 aa21.79■■□□□ 1.08
LSM1-203ENST00000520755 NALCNQ8IZF0 1738 aa21.79■■□□□ 1.08
LSM1-203ENST00000520755 DLC1Q96QB1 1528 aa21.77■■□□□ 1.08
LSM1-203ENST00000520755 QRICH2Q9H0J4 1663 aa21.77■■□□□ 1.08
LSM1-203ENST00000520755 WAPLQ7Z5K2 1190 aa21.76■■□□□ 1.07
LSM1-203ENST00000520755 SIPA1L2Q9P2F8 1722 aaPredicted RBP21.75■■□□□ 1.07
LSM1-203ENST00000520755 PLEKHH1Q9ULM0 1364 aa21.74■■□□□ 1.07
LSM1-203ENST00000520755 NCOA3Q9Y6Q9 1424 aa21.74■■□□□ 1.07
LSM1-203ENST00000520755 MSH6P52701 1360 aa21.74■■□□□ 1.07
LSM1-203ENST00000520755 FAM135BQ49AJ0 1406 aa21.73■■□□□ 1.07
LSM1-203ENST00000520755 PRAM1Q96QH2 718 aa21.73■■□□□ 1.07
LSM1-203ENST00000520755 SAFB2Q14151 953 aaKnown RBP eCLIP21.72■■□□□ 1.07
LSM1-203ENST00000520755 POGKQ9P215 609 aa21.72■■□□□ 1.07
LSM1-203ENST00000520755 USP47Q96K76 1375 aa21.72■■□□□ 1.07
Retrieved 100 of 20,778 RNA–protein pairs in 63.3 ms