RNA–Protein interactions for RNA: ENST00000519583.5

CLK4-203, Transcript of CDC like kinase 4, humanhuman

TSL 1 (best)

Gene CLK4, Length 3,462 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK4-203ENST00000519583 TMEM131LA2VDJ0 1609 aa11.39□□□□□ -0.59
CLK4-203ENST00000519583 SLIT1O75093 1534 aa11.39□□□□□ -0.59
CLK4-203ENST00000519583 ARHGAP23Q9P227 1491 aa11.39□□□□□ -0.59
CLK4-203ENST00000519583 CCDC144AA2RUR9 1427 aa11.38□□□□□ -0.59
CLK4-203ENST00000519583 SCAF11Q99590 1463 aaKnown RBP11.38□□□□□ -0.59
CLK4-203ENST00000519583 MYO5BQ9ULV0 1848 aa11.38□□□□□ -0.59
CLK4-203ENST00000519583 POLR1AO95602 1720 aaPredicted RBP11.38□□□□□ -0.59
CLK4-203ENST00000519583 RIMS2Q9UQ26 1411 aa11.37□□□□□ -0.59
CLK4-203ENST00000519583 NUTM2DQ5VT03 806 aaPredicted RBP11.37□□□□□ -0.59
CLK4-203ENST00000519583 SENP3Q9H4L4 574 aaPredicted RBP11.37□□□□□ -0.59
CLK4-203ENST00000519583 NPHP4O75161 1426 aaPredicted RBP11.37□□□□□ -0.59
CLK4-203ENST00000519583 NEURL4Q96JN8 1562 aa11.37□□□□□ -0.59
CLK4-203ENST00000519583 HDGFP51858 240 aaKnown RBP11.37□□□□□ -0.59
CLK4-203ENST00000519583 BCANQ96GW7 911 aa11.36□□□□□ -0.59
CLK4-203ENST00000519583 KIF1BO60333 1816 aa11.35□□□□□ -0.59
CLK4-203ENST00000519583 ANKRD30BQ9BXX2 1392 aa11.35□□□□□ -0.59
CLK4-203ENST00000519583 ABCF1Q8NE71 845 aaKnown RBP eCLIP11.35□□□□□ -0.59
CLK4-203ENST00000519583 MED14O60244 1454 aa11.35□□□□□ -0.59
CLK4-203ENST00000519583 ZFYVE9O95405 1425 aa11.35□□□□□ -0.59
CLK4-203ENST00000519583 RGL3Q3MIN7 710 aa11.34□□□□□ -0.59
CLK4-203ENST00000519583 IQGAP1P46940 1657 aa11.33□□□□□ -0.6
CLK4-203ENST00000519583 ZNF335Q9H4Z2 1342 aaPredicted RBP11.32□□□□□ -0.6
CLK4-203ENST00000519583 SLC26A8Q96RN1 970 aa11.32□□□□□ -0.6
CLK4-203ENST00000519583 MIER1Q8N108 512 aa11.32□□□□□ -0.6
CLK4-203ENST00000519583 PLEKHG1Q9ULL1 1385 aa11.31□□□□□ -0.6
CLK4-203ENST00000519583 SPATA31E1Q6ZUB1 1445 aa11.3□□□□□ -0.6
CLK4-203ENST00000519583 RPGRIP1LQ68CZ1 1315 aa11.3□□□□□ -0.6
CLK4-203ENST00000519583 NEXMIFQ5QGS0 1516 aa11.3□□□□□ -0.6
CLK4-203ENST00000519583 L3MBTL2Q969R5 705 aa11.29□□□□□ -0.6
CLK4-203ENST00000519583 VGFO15240 615 aaPredicted RBP11.29□□□□□ -0.6
CLK4-203ENST00000519583 HIRIP3Q9BW71 556 aaPredicted RBP11.28□□□□□ -0.6
CLK4-203ENST00000519583 TBX22Q9Y458 520 aa11.26□□□□□ -0.61
CLK4-203ENST00000519583 ADAMTS13Q76LX8 1427 aa11.26□□□□□ -0.61
CLK4-203ENST00000519583 CERKQ8TCT0 537 aa11.26□□□□□ -0.61
CLK4-203ENST00000519583 LTBP4Q8N2S1 1624 aa11.26□□□□□ -0.61
CLK4-203ENST00000519583 ADGRF5Q8IZF2 1346 aa11.25□□□□□ -0.61
CLK4-203ENST00000519583 PPLO60437 1756 aa11.25□□□□□ -0.61
CLK4-203ENST00000519583 KDM2AQ9Y2K7 1162 aa11.24□□□□□ -0.61
CLK4-203ENST00000519583 KCNA6P17658 529 aa11.23□□□□□ -0.61
CLK4-203ENST00000519583 DCAF11Q8TEB1 546 aa11.23□□□□□ -0.61
CLK4-203ENST00000519583 SETBP1Q9Y6X0 1596 aa11.23□□□□□ -0.61
CLK4-203ENST00000519583 NRXN3Q9Y4C0 1643 aa11.23□□□□□ -0.61
CLK4-203ENST00000519583 DIP2AQ14689 1571 aa11.22□□□□□ -0.61
CLK4-203ENST00000519583 CPS1P31327 1500 aa11.22□□□□□ -0.61
CLK4-203ENST00000519583 IFT172Q9UG01 1749 aa11.22□□□□□ -0.61
CLK4-203ENST00000519583 NBPF8Q3BBV2 869 aa11.22□□□□□ -0.61
CLK4-203ENST00000519583 STRCP1A6NGW2 1772 aa11.21□□□□□ -0.61
CLK4-203ENST00000519583 METP08581 1390 aa11.21□□□□□ -0.61
CLK4-203ENST00000519583 DDX10Q13206 875 aaKnown RBP11.21□□□□□ -0.62
CLK4-203ENST00000519583 PIK3R4Q99570 1358 aa11.2□□□□□ -0.62
CLK4-203ENST00000519583 PROSER2Q86WR7 435 aaPredicted RBP11.2□□□□□ -0.62
CLK4-203ENST00000519583 AMOTL2Q9Y2J4 779 aa11.2□□□□□ -0.62
CLK4-203ENST00000519583 MYOM2P54296 1465 aa11.2□□□□□ -0.62
CLK4-203ENST00000519583 ALKQ9UM73 1620 aa11.2□□□□□ -0.62
CLK4-203ENST00000519583 RBM33Q96EV2 1170 aaKnown RBP11.19□□□□□ -0.62
CLK4-203ENST00000519583 PIK3C2GO75747 1445 aa11.19□□□□□ -0.62
CLK4-203ENST00000519583 HSPA5P11021 654 aaKnown RBP11.19□□□□□ -0.62
CLK4-203ENST00000519583 PTPRUQ92729 1446 aa11.19□□□□□ -0.62
CLK4-203ENST00000519583 LRRC7Q96NW7 1537 aa11.19□□□□□ -0.62
CLK4-203ENST00000519583 CHD2O14647 1828 aaKnown RBP11.19□□□□□ -0.62
CLK4-203ENST00000519583 NWD1Q149M9 1564 aa11.18□□□□□ -0.62
CLK4-203ENST00000519583 CFAP70Q5T0N1 1121 aa11.18□□□□□ -0.62
CLK4-203ENST00000519583 YTHDC1Q96MU7 727 aaKnown RBP11.18□□□□□ -0.62
CLK4-203ENST00000519583 TMEM132EQ6IEE7 984 aa11.18□□□□□ -0.62
CLK4-203ENST00000519583 STAC3Q96MF2 364 aa11.18□□□□□ -0.62
CLK4-203ENST00000519583 NKTRP30414 1462 aaKnown RBP11.17□□□□□ -0.62
CLK4-203ENST00000519583 NRXN1Q9ULB1 1477 aa11.17□□□□□ -0.62
CLK4-203ENST00000519583 TMEM94Q12767 1356 aa11.17□□□□□ -0.62
CLK4-203ENST00000519583 EIF4G2P78344 907 aaKnown RBP eCLIP11.17□□□□□ -0.62
CLK4-203ENST00000519583 C14orf93Q9H972 538 aaKnown RBP11.17□□□□□ -0.62
CLK4-203ENST00000519583 STK26Q9P289 416 aa11.16□□□□□ -0.62
CLK4-203ENST00000519583 IQSEC2Q5JU85 1478 aa11.16□□□□□ -0.62
CLK4-203ENST00000519583 SETD1AO15047 1707 aaKnown RBP11.16□□□□□ -0.62
CLK4-203ENST00000519583 C14orf37Q86TY3 774 aa11.16□□□□□ -0.62
CLK4-203ENST00000519583 UBAP1LF5GYI3 381 aa11.15□□□□□ -0.62
CLK4-203ENST00000519583 FBXO41Q8TF61 875 aa11.14□□□□□ -0.63
CLK4-203ENST00000519583 XRN1Q8IZH2 1706 aaKnown RBP11.14□□□□□ -0.63
CLK4-203ENST00000519583 ASXL1Q8IXJ9 1541 aa11.13□□□□□ -0.63
CLK4-203ENST00000519583 CENPBP07199 599 aaPredicted RBP11.13□□□□□ -0.63
CLK4-203ENST00000519583 LRPPRCP42704 1394 aaKnown RBP11.13□□□□□ -0.63
CLK4-203ENST00000519583 TOM1O60784 492 aa11.12□□□□□ -0.63
CLK4-203ENST00000519583 LAMC1P11047 1609 aa11.12□□□□□ -0.63
CLK4-203ENST00000519583 PRAG1Q86YV5 1406 aa11.12□□□□□ -0.63
CLK4-203ENST00000519583 XIRP1Q702N8 1843 aaKnown RBP11.12□□□□□ -0.63
CLK4-203ENST00000519583 YTHDC2Q9H6S0 1430 aaKnown RBP11.12□□□□□ -0.63
CLK4-203ENST00000519583 MSH6P52701 1360 aa11.12□□□□□ -0.63
CLK4-203ENST00000519583 ROBO2Q9HCK4 1378 aa11.12□□□□□ -0.63
CLK4-203ENST00000519583 WASHC2AQ641Q2 1341 aa11.11□□□□□ -0.63
CLK4-203ENST00000519583 SCAF1Q9H7N4 1312 aaKnown RBP11.11□□□□□ -0.63
CLK4-203ENST00000519583 PTCH1Q13635 1447 aa11.11□□□□□ -0.63
CLK4-203ENST00000519583 PIP4K2BP78356 416 aa11.11□□□□□ -0.63
CLK4-203ENST00000519583 ILDR1Q86SU0 546 aaPredicted RBP11.11□□□□□ -0.63
CLK4-203ENST00000519583 ABCC11Q96J66 1382 aa11.1□□□□□ -0.63
CLK4-203ENST00000519583 NCOA3Q9Y6Q9 1424 aa11.1□□□□□ -0.63
CLK4-203ENST00000519583 WAPLQ7Z5K2 1190 aa11.1□□□□□ -0.63
CLK4-203ENST00000519583 C19orf44Q9H6X5 657 aa11.1□□□□□ -0.63
CLK4-203ENST00000519583 TRAK1Q9UPV9 953 aa11.1□□□□□ -0.63
CLK4-203ENST00000519583 NBPF1Q3BBV0 1214 aa11.09□□□□□ -0.63
CLK4-203ENST00000519583 C11orf95C9JLR9 678 aaPredicted RBP11.09□□□□□ -0.63
CLK4-203ENST00000519583 ADGRB1O14514 1584 aa11.09□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 47.3 ms