RNA–Protein interactions for RNA: ENST00000514987.5

NUP54-217, Transcript of nucleoporin 54, humanhuman

TSL 2 BASIC

Gene NUP54, Length 1,563 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-217ENST00000514987 HECW2Q9P2P5 1572 aa19.97■□□□□ 0.79
NUP54-217ENST00000514987 RNF123Q5XPI4 1314 aa19.97■□□□□ 0.79
NUP54-217ENST00000514987 PPRC1Q5VV67 1664 aaKnown RBP19.97■□□□□ 0.79
NUP54-217ENST00000514987 NEO1Q92859 1461 aa19.96■□□□□ 0.79
NUP54-217ENST00000514987 IRX6P78412 446 aaPredicted RBP19.96■□□□□ 0.79
NUP54-217ENST00000514987 IFT172Q9UG01 1749 aa19.96■□□□□ 0.79
NUP54-217ENST00000514987 PDE3BQ13370 1112 aa19.95■□□□□ 0.78
NUP54-217ENST00000514987 NRXN1Q9ULB1 1477 aa19.92■□□□□ 0.78
NUP54-217ENST00000514987 ABCA6Q8N139 1617 aa19.91■□□□□ 0.78
NUP54-217ENST00000514987 NPC1L1Q9UHC9 1359 aa19.9■□□□□ 0.78
NUP54-217ENST00000514987 ADGRB3O60242 1522 aa19.9■□□□□ 0.78
NUP54-217ENST00000514987 KNSTRNQ9Y448 316 aa19.9■□□□□ 0.78
NUP54-217ENST00000514987 KDM5AP29375 1690 aaKnown RBP19.9■□□□□ 0.78
NUP54-217ENST00000514987 FRMPD1Q5SYB0 1578 aa19.9■□□□□ 0.78
NUP54-217ENST00000514987 SETBP1Q9Y6X0 1596 aa19.88■□□□□ 0.77
NUP54-217ENST00000514987 CC2D1BQ5T0F9 858 aaKnown RBP19.88■□□□□ 0.77
NUP54-217ENST00000514987 UGGT1Q9NYU2 1555 aa19.88■□□□□ 0.77
NUP54-217ENST00000514987 BLMP54132 1417 aaPredicted RBP19.88■□□□□ 0.77
NUP54-217ENST00000514987 MYO3AQ8NEV4 1616 aa19.87■□□□□ 0.77
NUP54-217ENST00000514987 MROH2AA6NES4 1674 aa19.87■□□□□ 0.77
NUP54-217ENST00000514987 RPGRIP1LQ68CZ1 1315 aa19.86■□□□□ 0.77
NUP54-217ENST00000514987 ASXL1Q8IXJ9 1541 aa19.86■□□□□ 0.77
NUP54-217ENST00000514987 RBM19Q9Y4C8 960 aaKnown RBP19.86■□□□□ 0.77
NUP54-217ENST00000514987 SBNO2Q9Y2G9 1366 aa19.85■□□□□ 0.77
NUP54-217ENST00000514987 MYOM1P52179 1685 aa19.85■□□□□ 0.77
NUP54-217ENST00000514987 ABCC3O15438 1527 aa19.84■□□□□ 0.77
NUP54-217ENST00000514987 NPATQ14207 1427 aa19.84■□□□□ 0.77
NUP54-217ENST00000514987 ADGRF5Q8IZF2 1346 aa19.82■□□□□ 0.76
NUP54-217ENST00000514987 PPLO60437 1756 aa19.82■□□□□ 0.76
NUP54-217ENST00000514987 AMER1Q5JTC6 1135 aaPredicted RBP19.82■□□□□ 0.76
NUP54-217ENST00000514987 CFAP70Q5T0N1 1121 aa19.82■□□□□ 0.76
NUP54-217ENST00000514987 CAMSAP1Q5T5Y3 1602 aa19.82■□□□□ 0.76
NUP54-217ENST00000514987 ZC3H13Q5T200 1668 aaKnown RBP19.81■□□□□ 0.76
NUP54-217ENST00000514987 PIK3C2GO75747 1445 aa19.8■□□□□ 0.76
NUP54-217ENST00000514987 DIP2CQ9Y2E4 1556 aa19.79■□□□□ 0.76
NUP54-217ENST00000514987 ERVK-7P63135 1459 aa19.79■□□□□ 0.76
NUP54-217ENST00000514987 NOS1P29475 1434 aa19.79■□□□□ 0.76
NUP54-217ENST00000514987 PPP2R1AP30153 589 aa19.78■□□□□ 0.76
NUP54-217ENST00000514987 GGT6Q6P531 493 aa19.78■□□□□ 0.76
NUP54-217ENST00000514987 GLI2P10070 1586 aa19.78■□□□□ 0.76
NUP54-217ENST00000514987 RICTORQ6R327 1708 aa19.78■□□□□ 0.76
NUP54-217ENST00000514987 ARHGAP31Q2M1Z3 1444 aa19.78■□□□□ 0.76
NUP54-217ENST00000514987 B4GALNT3Q6L9W6 998 aa19.78■□□□□ 0.76
NUP54-217ENST00000514987 RCAN3Q9UKA8 241 aa19.76■□□□□ 0.75
NUP54-217ENST00000514987 PIK3C2BO00750 1634 aa19.76■□□□□ 0.75
NUP54-217ENST00000514987 C14orf93Q9H972 538 aaKnown RBP19.75■□□□□ 0.75
NUP54-217ENST00000514987 WDR43Q15061 677 aaKnown RBP eCLIP19.74■□□□□ 0.75
NUP54-217ENST00000514987 CENPJQ9HC77 1338 aaPredicted RBP19.74■□□□□ 0.75
NUP54-217ENST00000514987 CHGAP10645 457 aaKnown RBP19.74■□□□□ 0.75
NUP54-217ENST00000514987 RRP1P56182 461 aaKnown RBP19.74■□□□□ 0.75
NUP54-217ENST00000514987 CCDC136Q96JN2 1154 aa19.73■□□□□ 0.75
NUP54-217ENST00000514987 RAPGEF3O95398 923 aa19.71■□□□□ 0.75
NUP54-217ENST00000514987 FANCIQ9NVI1 1328 aa19.71■□□□□ 0.75
NUP54-217ENST00000514987 ADGRB1O14514 1584 aa19.71■□□□□ 0.75
NUP54-217ENST00000514987 VGFO15240 615 aaPredicted RBP19.7■□□□□ 0.74
NUP54-217ENST00000514987 PUS7Q96PZ0 661 aaKnown RBP19.7■□□□□ 0.74
NUP54-217ENST00000514987 CFAP65Q6ZU64 1925 aaKnown RBP19.7■□□□□ 0.74
NUP54-217ENST00000514987 QRICH2Q9H0J4 1663 aa19.69■□□□□ 0.74
NUP54-217ENST00000514987 ADAMTS8Q9UP79 889 aa19.69■□□□□ 0.74
NUP54-217ENST00000514987 SIGLEC1Q9BZZ2 1709 aa19.69■□□□□ 0.74
NUP54-217ENST00000514987 ZFYVE9O95405 1425 aa19.68■□□□□ 0.74
NUP54-217ENST00000514987 SLC52A1Q9NWF4 448 aa19.68■□□□□ 0.74
NUP54-217ENST00000514987 NGEFQ8N5V2 710 aa19.67■□□□□ 0.74
NUP54-217ENST00000514987 SALL2Q9Y467 1007 aaPredicted RBP19.66■□□□□ 0.74
NUP54-217ENST00000514987 NEXMIFQ5QGS0 1516 aa19.66■□□□□ 0.74
NUP54-217ENST00000514987 SENP3-EIF4A1A0A087X0R7 540 aa19.66■□□□□ 0.74
NUP54-217ENST00000514987 USP32Q8NFA0 1604 aa19.63■□□□□ 0.73
NUP54-217ENST00000514987 CDCA7LQ96GN5 454 aa19.62■□□□□ 0.73
NUP54-217ENST00000514987 CARD14Q9BXL6 1004 aa19.62■□□□□ 0.73
NUP54-217ENST00000514987 TRAK1Q9UPV9 953 aa19.62■□□□□ 0.73
NUP54-217ENST00000514987 ANP32EQ9BTT0 268 aa19.61■□□□□ 0.73
NUP54-217ENST00000514987 PREX1Q8TCU6 1659 aa19.6■□□□□ 0.73
NUP54-217ENST00000514987 REREQ9P2R6 1566 aa19.6■□□□□ 0.73
NUP54-217ENST00000514987 YEATS2Q9ULM3 1422 aa19.6■□□□□ 0.73
NUP54-217ENST00000514987 ZNF521Q96K83 1311 aa19.6■□□□□ 0.73
NUP54-217ENST00000514987 PPP6R1Q9UPN7 881 aa19.6■□□□□ 0.73
NUP54-217ENST00000514987 POLR3AO14802 1390 aaPredicted RBP19.59■□□□□ 0.73
NUP54-217ENST00000514987 EVC2Q86UK5 1308 aa19.59■□□□□ 0.73
NUP54-217ENST00000514987 ARHGEF28Q8N1W1 1705 aaKnown RBP19.59■□□□□ 0.73
NUP54-217ENST00000514987 GOLGA2Q08379 1002 aa19.58■□□□□ 0.73
NUP54-217ENST00000514987 DIP2BQ9P265 1576 aa19.57■□□□□ 0.72
NUP54-217ENST00000514987 IDI1Q13907 227 aa19.57■□□□□ 0.72
NUP54-217ENST00000514987 TMEM131LA2VDJ0 1609 aa19.56■□□□□ 0.72
NUP54-217ENST00000514987 CYB5RLQ6IPT4 315 aa19.56■□□□□ 0.72
NUP54-217ENST00000514987 RIMBP3CA6NJZ7 1639 aa19.56■□□□□ 0.72
NUP54-217ENST00000514987 RIMBP3BA6NNM3 1639 aa19.56■□□□□ 0.72
NUP54-217ENST00000514987 RIMBP3Q9UFD9 1639 aa19.56■□□□□ 0.72
NUP54-217ENST00000514987 NSD3Q9BZ95 1437 aa19.56■□□□□ 0.72
NUP54-217ENST00000514987 NSD2O96028 1365 aa19.55■□□□□ 0.72
NUP54-217ENST00000514987 PLEKHH1Q9ULM0 1364 aa19.55■□□□□ 0.72
NUP54-217ENST00000514987 NINLQ9Y2I6 1382 aa19.55■□□□□ 0.72
NUP54-217ENST00000514987 AGLP35573 1532 aa19.55■□□□□ 0.72
NUP54-217ENST00000514987 TMEM132EQ6IEE7 984 aa19.55■□□□□ 0.72
NUP54-217ENST00000514987 EXOC6Q8TAG9 804 aa19.55■□□□□ 0.72
NUP54-217ENST00000514987 DUSP27Q5VZP5 1158 aa19.53■□□□□ 0.72
NUP54-217ENST00000514987 MORC1Q86VD1 984 aa19.53■□□□□ 0.72
NUP54-217ENST00000514987 GOLGA6L2Q8N9W4 650 aaPredicted RBP19.53■□□□□ 0.72
NUP54-217ENST00000514987 CGNL1Q0VF96 1302 aa19.53■□□□□ 0.72
NUP54-217ENST00000514987 FAM69CQ0P6D2 419 aa19.52■□□□□ 0.71
NUP54-217ENST00000514987 ANKRD36BQ8N2N9 1353 aa19.52■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 8.6 ms