RNA–Protein interactions for RNA: ENST00000509277.5

LIMCH1-209, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2 BASIC

Gene LIMCH1, Length 3,474 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-209ENST00000509277 RBM33Q96EV2 1170 aaKnown RBP11.94□□□□□ -0.5
LIMCH1-209ENST00000509277 EFCAB6Q5THR3 1501 aa11.94□□□□□ -0.5
LIMCH1-209ENST00000509277 TET3O43151 1660 aa11.94□□□□□ -0.5
LIMCH1-209ENST00000509277 EIF2AK4Q9P2K8 1649 aaKnown RBP11.94□□□□□ -0.5
LIMCH1-209ENST00000509277 NUTM2FA1L443 756 aa11.94□□□□□ -0.5
LIMCH1-209ENST00000509277 VGFO15240 615 aaPredicted RBP11.94□□□□□ -0.5
LIMCH1-209ENST00000509277 EID1Q9Y6B2 187 aa11.93□□□□□ -0.5
LIMCH1-209ENST00000509277 PPP6R1Q9UPN7 881 aa11.93□□□□□ -0.5
LIMCH1-209ENST00000509277 POGKQ9P215 609 aa11.91□□□□□ -0.5
LIMCH1-209ENST00000509277 CAMSAP1Q5T5Y3 1602 aa11.91□□□□□ -0.5
LIMCH1-209ENST00000509277 PLEKHG5O94827 1062 aa11.91□□□□□ -0.5
LIMCH1-209ENST00000509277 CLTCL1P53675 1640 aa11.91□□□□□ -0.5
LIMCH1-209ENST00000509277 USP47Q96K76 1375 aa11.9□□□□□ -0.5
LIMCH1-209ENST00000509277 ERVK-7P63135 1459 aa11.9□□□□□ -0.51
LIMCH1-209ENST00000509277 DEPDC5O75140 1603 aa11.9□□□□□ -0.51
LIMCH1-209ENST00000509277 C14orf37Q86TY3 774 aa11.9□□□□□ -0.51
LIMCH1-209ENST00000509277 SPHKAPQ2M3C7 1700 aa11.89□□□□□ -0.51
LIMCH1-209ENST00000509277 CNTLNQ9NXG0 1405 aa11.89□□□□□ -0.51
LIMCH1-209ENST00000509277 RNF17Q9BXT8 1623 aaKnown RBP11.89□□□□□ -0.51
LIMCH1-209ENST00000509277 DEKP35659 375 aaKnown RBP11.88□□□□□ -0.51
LIMCH1-209ENST00000509277 THEMISQ8N1K5 641 aaPredicted RBP11.88□□□□□ -0.51
LIMCH1-209ENST00000509277 TMC1Q8TDI8 760 aa11.88□□□□□ -0.51
LIMCH1-209ENST00000509277 RIMS1Q86UR5 1692 aaKnown RBP11.88□□□□□ -0.51
LIMCH1-209ENST00000509277 AGLP35573 1532 aa11.88□□□□□ -0.51
LIMCH1-209ENST00000509277 MINK1Q8N4C8 1332 aaPredicted RBP11.88□□□□□ -0.51
LIMCH1-209ENST00000509277 LTKP29376 864 aa11.88□□□□□ -0.51
LIMCH1-209ENST00000509277 HDGFP51858 240 aaKnown RBP11.88□□□□□ -0.51
LIMCH1-209ENST00000509277 MADDQ8WXG6 1647 aa11.88□□□□□ -0.51
LIMCH1-209ENST00000509277 TRPM2O94759 1503 aa11.87□□□□□ -0.51
LIMCH1-209ENST00000509277 PTPRTO14522 1441 aa11.87□□□□□ -0.51
LIMCH1-209ENST00000509277 SALL2Q9Y467 1007 aaPredicted RBP11.86□□□□□ -0.51
LIMCH1-209ENST00000509277 VWDEQ8N2E2 1590 aa11.86□□□□□ -0.51
LIMCH1-209ENST00000509277 KDM4FA0A1W2PPD8 638 aa11.86□□□□□ -0.51
LIMCH1-209ENST00000509277 NCKAP5LQ9HCH0 1330 aa11.86□□□□□ -0.51
LIMCH1-209ENST00000509277 C11orf95C9JLR9 678 aaPredicted RBP11.85□□□□□ -0.51
LIMCH1-209ENST00000509277 FER1L4A9Z1Z3 1794 aa11.85□□□□□ -0.51
LIMCH1-209ENST00000509277 SPATA31E1Q6ZUB1 1445 aa11.85□□□□□ -0.51
LIMCH1-209ENST00000509277 WAPLQ7Z5K2 1190 aa11.85□□□□□ -0.51
LIMCH1-209ENST00000509277 RIMS2Q9UQ26 1411 aa11.85□□□□□ -0.51
LIMCH1-209ENST00000509277 SYNMO15061 1565 aa11.84□□□□□ -0.51
LIMCH1-209ENST00000509277 KIF1BO60333 1816 aa11.84□□□□□ -0.51
LIMCH1-209ENST00000509277 PRAG1Q86YV5 1406 aa11.84□□□□□ -0.51
LIMCH1-209ENST00000509277 SRPK2P78362 688 aaKnown RBP11.84□□□□□ -0.51
LIMCH1-209ENST00000509277 ANKLE2Q86XL3 938 aa11.83□□□□□ -0.52
LIMCH1-209ENST00000509277 LMTK2Q8IWU2 1503 aa11.83□□□□□ -0.52
LIMCH1-209ENST00000509277 PRAM1Q96QH2 718 aa11.83□□□□□ -0.52
LIMCH1-209ENST00000509277 PREX1Q8TCU6 1659 aa11.83□□□□□ -0.52
LIMCH1-209ENST00000509277 ABCF1Q8NE71 845 aaKnown RBP eCLIP11.83□□□□□ -0.52
LIMCH1-209ENST00000509277 ARHGAP31Q2M1Z3 1444 aa11.82□□□□□ -0.52
LIMCH1-209ENST00000509277 SENP3-EIF4A1A0A087X0R7 540 aa11.81□□□□□ -0.52
LIMCH1-209ENST00000509277 RPGRIP1LQ68CZ1 1315 aa11.81□□□□□ -0.52
LIMCH1-209ENST00000509277 MROH2AA6NES4 1674 aa11.8□□□□□ -0.52
LIMCH1-209ENST00000509277 MYO5BQ9ULV0 1848 aa11.8□□□□□ -0.52
LIMCH1-209ENST00000509277 REREQ9P2R6 1566 aa11.8□□□□□ -0.52
LIMCH1-209ENST00000509277 PIK3C2BO00750 1634 aa11.8□□□□□ -0.52
LIMCH1-209ENST00000509277 BCORL1Q5H9F3 1711 aa11.8□□□□□ -0.52
LIMCH1-209ENST00000509277 TMF1P82094 1093 aa11.8□□□□□ -0.52
LIMCH1-209ENST00000509277 RTL5Q5HYW3 569 aaPredicted RBP11.8□□□□□ -0.52
LIMCH1-209ENST00000509277 C14orf93Q9H972 538 aaKnown RBP11.8□□□□□ -0.52
LIMCH1-209ENST00000509277 WASHC2AQ641Q2 1341 aa11.8□□□□□ -0.52
LIMCH1-209ENST00000509277 CABP2Q9NPB3 220 aa11.79□□□□□ -0.52
LIMCH1-209ENST00000509277 PTPRMP28827 1452 aa11.79□□□□□ -0.52
LIMCH1-209ENST00000509277 A2ML1A8K2U0 1454 aa11.79□□□□□ -0.52
LIMCH1-209ENST00000509277 TMEM2Q9UHN6 1383 aa11.79□□□□□ -0.52
LIMCH1-209ENST00000509277 ZC3H13Q5T200 1668 aaKnown RBP11.78□□□□□ -0.52
LIMCH1-209ENST00000509277 UHRF1BP1Q6BDS2 1440 aa11.78□□□□□ -0.52
LIMCH1-209ENST00000509277 KIF7Q2M1P5 1343 aa11.78□□□□□ -0.52
LIMCH1-209ENST00000509277 CENPJQ9HC77 1338 aaPredicted RBP11.78□□□□□ -0.52
LIMCH1-209ENST00000509277 MSH5O43196 834 aa11.78□□□□□ -0.52
LIMCH1-209ENST00000509277 C3P01024 1663 aa11.77□□□□□ -0.52
LIMCH1-209ENST00000509277 TNNT2P45379 298 aaPredicted RBP11.77□□□□□ -0.53
LIMCH1-209ENST00000509277 AMOTL2Q9Y2J4 779 aa11.77□□□□□ -0.53
LIMCH1-209ENST00000509277 ANP32CO43423 234 aa11.76□□□□□ -0.53
LIMCH1-209ENST00000509277 CC2D1BQ5T0F9 858 aaKnown RBP11.76□□□□□ -0.53
LIMCH1-209ENST00000509277 ADGRB3O60242 1522 aa11.75□□□□□ -0.53
LIMCH1-209ENST00000509277 METP08581 1390 aa11.74□□□□□ -0.53
LIMCH1-209ENST00000509277 RALGAPBQ86X10 1494 aa11.74□□□□□ -0.53
LIMCH1-209ENST00000509277 SOX12O15370 315 aa11.74□□□□□ -0.53
LIMCH1-209ENST00000509277 EIF3AQ14152 1382 aaKnown RBP11.74□□□□□ -0.53
LIMCH1-209ENST00000509277 SPATA31D1Q6ZQQ2 1576 aa11.74□□□□□ -0.53
LIMCH1-209ENST00000509277 KCNA6P17658 529 aa11.73□□□□□ -0.53
LIMCH1-209ENST00000509277 STAC3Q96MF2 364 aa11.73□□□□□ -0.53
LIMCH1-209ENST00000509277 NPM2Q86SE8 214 aaKnown RBP11.73□□□□□ -0.53
LIMCH1-209ENST00000509277 DISP3Q9P2K9 1392 aa11.72□□□□□ -0.53
LIMCH1-209ENST00000509277 SLC12A5Q9H2X9 1139 aa11.72□□□□□ -0.53
LIMCH1-209ENST00000509277 CCDC7Q96M83 1385 aa11.72□□□□□ -0.53
LIMCH1-209ENST00000509277 LMOD2Q6P5Q4 547 aa11.72□□□□□ -0.53
LIMCH1-209ENST00000509277 PROSER2Q86WR7 435 aaPredicted RBP11.72□□□□□ -0.53
LIMCH1-209ENST00000509277 PANK3Q9H999 370 aa11.72□□□□□ -0.53
LIMCH1-209ENST00000509277 TMEM131LA2VDJ0 1609 aa11.72□□□□□ -0.53
LIMCH1-209ENST00000509277 PLEKHH1Q9ULM0 1364 aa11.71□□□□□ -0.53
LIMCH1-209ENST00000509277 NLRP1Q9C000 1473 aa11.71□□□□□ -0.53
LIMCH1-209ENST00000509277 IL27Q8NEV9 243 aa11.7□□□□□ -0.54
LIMCH1-209ENST00000509277 PMFBP1Q8TBY8 1022 aa11.7□□□□□ -0.54
LIMCH1-209ENST00000509277 NEXMIFQ5QGS0 1516 aa11.7□□□□□ -0.54
LIMCH1-209ENST00000509277 SUGP2Q8IX01 1082 aaKnown RBP eCLIP11.7□□□□□ -0.54
LIMCH1-209ENST00000509277 PIK3C2GO75747 1445 aa11.7□□□□□ -0.54
LIMCH1-209ENST00000509277 SETD1BQ9UPS6 1966 aaKnown RBP11.7□□□□□ -0.54
LIMCH1-209ENST00000509277 TESK2Q96S53 571 aa11.7□□□□□ -0.54
LIMCH1-209ENST00000509277 CDK19Q9BWU1 502 aa11.7□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms