RNA–Protein interactions for RNA: ENST00000508235.1

RNF4-210, Transcript of ring finger protein 4, humanhuman

TSL 3

Gene RNF4, Length 603 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-210ENST00000508235 RIMS2Q9UQ26 1411 aa22.06■■□□□ 1.12
RNF4-210ENST00000508235 LTKP29376 864 aa22.06■■□□□ 1.12
RNF4-210ENST00000508235 ZFYVE9O95405 1425 aa22.06■■□□□ 1.12
RNF4-210ENST00000508235 PPP1R15AO75807 674 aaPredicted RBP22.04■■□□□ 1.12
RNF4-210ENST00000508235 ZNF326Q5BKZ1 582 aaKnown RBP22.04■■□□□ 1.12
RNF4-210ENST00000508235 PLEKHG1Q9ULL1 1385 aa21.99■■□□□ 1.11
RNF4-210ENST00000508235 RPGRIP1LQ68CZ1 1315 aa21.99■■□□□ 1.11
RNF4-210ENST00000508235 ANKRD30BQ9BXX2 1392 aa21.99■■□□□ 1.11
RNF4-210ENST00000508235 BCANQ96GW7 911 aa21.98■■□□□ 1.11
RNF4-210ENST00000508235 NEXMIFQ5QGS0 1516 aa21.96■■□□□ 1.11
RNF4-210ENST00000508235 SPATA31E1Q6ZUB1 1445 aa21.95■■□□□ 1.1
RNF4-210ENST00000508235 PPLO60437 1756 aa21.94■■□□□ 1.1
RNF4-210ENST00000508235 ZNF335Q9H4Z2 1342 aaPredicted RBP21.94■■□□□ 1.1
RNF4-210ENST00000508235 VGFO15240 615 aaPredicted RBP21.93■■□□□ 1.1
RNF4-210ENST00000508235 NUTM2DQ5VT03 806 aaPredicted RBP21.93■■□□□ 1.1
RNF4-210ENST00000508235 LTBP4Q8N2S1 1624 aa21.92■■□□□ 1.1
RNF4-210ENST00000508235 DIP2AQ14689 1571 aa21.92■■□□□ 1.1
RNF4-210ENST00000508235 CPS1P31327 1500 aa21.9■■□□□ 1.1
RNF4-210ENST00000508235 RGL3Q3MIN7 710 aa21.9■■□□□ 1.1
RNF4-210ENST00000508235 SLC26A8Q96RN1 970 aa21.9■■□□□ 1.1
RNF4-210ENST00000508235 IFT172Q9UG01 1749 aa21.89■■□□□ 1.1
RNF4-210ENST00000508235 TBX22Q9Y458 520 aa21.89■■□□□ 1.09
RNF4-210ENST00000508235 SETBP1Q9Y6X0 1596 aa21.89■■□□□ 1.09
RNF4-210ENST00000508235 CERKQ8TCT0 537 aa21.88■■□□□ 1.09
RNF4-210ENST00000508235 PCGF6Q9BYE7 350 aa21.88■■□□□ 1.09
RNF4-210ENST00000508235 ADAMTS13Q76LX8 1427 aa21.86■■□□□ 1.09
RNF4-210ENST00000508235 DHX57Q6P158 1386 aaKnown RBP21.86■■□□□ 1.09
RNF4-210ENST00000508235 IQSEC2Q5JU85 1478 aa21.85■■□□□ 1.09
RNF4-210ENST00000508235 NRXN3Q9Y4C0 1643 aa21.84■■□□□ 1.09
RNF4-210ENST00000508235 SENP3Q9H4L4 574 aaPredicted RBP21.84■■□□□ 1.09
RNF4-210ENST00000508235 PIK3R4Q99570 1358 aa21.84■■□□□ 1.09
RNF4-210ENST00000508235 STRCP1A6NGW2 1772 aa21.84■■□□□ 1.09
RNF4-210ENST00000508235 CHD2O14647 1828 aaKnown RBP21.83■■□□□ 1.09
RNF4-210ENST00000508235 KCNA6P17658 529 aa21.83■■□□□ 1.09
RNF4-210ENST00000508235 NWD1Q149M9 1564 aa21.82■■□□□ 1.08
RNF4-210ENST00000508235 STAC3Q96MF2 364 aa21.81■■□□□ 1.08
RNF4-210ENST00000508235 MYOM2P54296 1465 aa21.8■■□□□ 1.08
RNF4-210ENST00000508235 NKTRP30414 1462 aaKnown RBP21.79■■□□□ 1.08
RNF4-210ENST00000508235 ADGRF5Q8IZF2 1346 aa21.78■■□□□ 1.08
RNF4-210ENST00000508235 ALKQ9UM73 1620 aa21.77■■□□□ 1.08
RNF4-210ENST00000508235 LRRC7Q96NW7 1537 aa21.75■■□□□ 1.07
RNF4-210ENST00000508235 SETD1AO15047 1707 aaKnown RBP21.75■■□□□ 1.07
RNF4-210ENST00000508235 PIK3C2GO75747 1445 aa21.75■■□□□ 1.07
RNF4-210ENST00000508235 LAMC1P11047 1609 aa21.74■■□□□ 1.07
RNF4-210ENST00000508235 DCAF11Q8TEB1 546 aa21.74■■□□□ 1.07
RNF4-210ENST00000508235 NRXN1Q9ULB1 1477 aa21.74■■□□□ 1.07
RNF4-210ENST00000508235 METP08581 1390 aa21.73■■□□□ 1.07
RNF4-210ENST00000508235 PROSER2Q86WR7 435 aaPredicted RBP21.72■■□□□ 1.07
RNF4-210ENST00000508235 FBXO41Q8TF61 875 aa21.71■■□□□ 1.07
RNF4-210ENST00000508235 AMOTL2Q9Y2J4 779 aa21.71■■□□□ 1.07
RNF4-210ENST00000508235 XRN1Q8IZH2 1706 aaKnown RBP21.71■■□□□ 1.07
RNF4-210ENST00000508235 SIN3AQ96ST3 1273 aa21.7■■□□□ 1.06
RNF4-210ENST00000508235 KDM2AQ9Y2K7 1162 aa21.7■■□□□ 1.06
RNF4-210ENST00000508235 XIRP1Q702N8 1843 aaKnown RBP21.69■■□□□ 1.06
RNF4-210ENST00000508235 NEUROD1Q13562 356 aa21.69■■□□□ 1.06
RNF4-210ENST00000508235 PTPRUQ92729 1446 aa21.69■■□□□ 1.06
RNF4-210ENST00000508235 C14orf93Q9H972 538 aaKnown RBP21.68■■□□□ 1.06
RNF4-210ENST00000508235 TMEM94Q12767 1356 aa21.68■■□□□ 1.06
RNF4-210ENST00000508235 NCOA3Q9Y6Q9 1424 aa21.68■■□□□ 1.06
RNF4-210ENST00000508235 PRAG1Q86YV5 1406 aa21.64■■□□□ 1.06
RNF4-210ENST00000508235 TOM1O60784 492 aa21.64■■□□□ 1.05
RNF4-210ENST00000508235 CLSPNQ9HAW4 1339 aa21.63■■□□□ 1.05
RNF4-210ENST00000508235 PTCH1Q13635 1447 aa21.63■■□□□ 1.05
RNF4-210ENST00000508235 UBAP1LF5GYI3 381 aa21.62■■□□□ 1.05
RNF4-210ENST00000508235 CFAP70Q5T0N1 1121 aa21.62■■□□□ 1.05
RNF4-210ENST00000508235 MSH6P52701 1360 aa21.61■■□□□ 1.05
RNF4-210ENST00000508235 KNDC1Q76NI1 1749 aa21.61■■□□□ 1.05
RNF4-210ENST00000508235 L3MBTL2Q969R5 705 aa21.61■■□□□ 1.05
RNF4-210ENST00000508235 LRPPRCP42704 1394 aaKnown RBP21.61■■□□□ 1.05
RNF4-210ENST00000508235 KIAA1210Q9ULL0 1709 aa21.6■■□□□ 1.05
RNF4-210ENST00000508235 C14orf37Q86TY3 774 aa21.6■■□□□ 1.05
RNF4-210ENST00000508235 TONSLQ96HA7 1378 aa21.6■■□□□ 1.05
RNF4-210ENST00000508235 ASXL1Q8IXJ9 1541 aa21.6■■□□□ 1.05
RNF4-210ENST00000508235 RBM33Q96EV2 1170 aaKnown RBP21.59■■□□□ 1.05
RNF4-210ENST00000508235 ABCC11Q96J66 1382 aa21.59■■□□□ 1.05
RNF4-210ENST00000508235 TECPR2O15040 1411 aa21.58■■□□□ 1.05
RNF4-210ENST00000508235 YTHDC2Q9H6S0 1430 aaKnown RBP21.58■■□□□ 1.05
RNF4-210ENST00000508235 TMEM132EQ6IEE7 984 aa21.58■■□□□ 1.05
RNF4-210ENST00000508235 C19orf44Q9H6X5 657 aa21.56■■□□□ 1.04
RNF4-210ENST00000508235 STK26Q9P289 416 aa21.56■■□□□ 1.04
RNF4-210ENST00000508235 ILDR1Q86SU0 546 aaPredicted RBP21.55■■□□□ 1.04
RNF4-210ENST00000508235 ROBO2Q9HCK4 1378 aa21.55■■□□□ 1.04
RNF4-210ENST00000508235 ADGRB1O14514 1584 aa21.55■■□□□ 1.04
RNF4-210ENST00000508235 CCER1Q8TC90 406 aaPredicted RBP21.54■■□□□ 1.04
RNF4-210ENST00000508235 SIRT1Q96EB6 747 aa21.54■■□□□ 1.04
RNF4-210ENST00000508235 SIPA1L2Q9P2F8 1722 aaPredicted RBP21.54■■□□□ 1.04
RNF4-210ENST00000508235 DCCP43146 1447 aa21.53■■□□□ 1.04
RNF4-210ENST00000508235 ATF3P18847 181 aa21.52■■□□□ 1.04
RNF4-210ENST00000508235 CADPS2Q86UW7 1296 aa21.52■■□□□ 1.04
RNF4-210ENST00000508235 FAM135BQ49AJ0 1406 aa21.52■■□□□ 1.04
RNF4-210ENST00000508235 ADGRL3Q9HAR2 1447 aa21.52■■□□□ 1.04
RNF4-210ENST00000508235 DLC1Q96QB1 1528 aa21.51■■□□□ 1.03
RNF4-210ENST00000508235 NALCNQ8IZF0 1738 aa21.51■■□□□ 1.03
RNF4-210ENST00000508235 SCAF1Q9H7N4 1312 aaKnown RBP21.5■■□□□ 1.03
RNF4-210ENST00000508235 PIP4K2BP78356 416 aa21.49■■□□□ 1.03
RNF4-210ENST00000508235 TIMELESSQ9UNS1 1208 aa21.48■■□□□ 1.03
RNF4-210ENST00000508235 TRPM1Q7Z4N2 1603 aa21.47■■□□□ 1.03
RNF4-210ENST00000508235 SLAIN2Q9P270 581 aa21.46■■□□□ 1.03
RNF4-210ENST00000508235 WAPLQ7Z5K2 1190 aa21.45■■□□□ 1.02
RNF4-210ENST00000508235 TRAK1Q9UPV9 953 aa21.45■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 79.3 ms