RNA–Protein interactions for RNA: ENST00000506767.1

TCOF1-210, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 5

Gene TCOF1, Length 869 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-210ENST00000506767 RPGRIP1LQ68CZ1 1315 aa18.74■□□□□ 0.59
TCOF1-210ENST00000506767 NCKAP5LQ9HCH0 1330 aa18.74■□□□□ 0.59
TCOF1-210ENST00000506767 SCAF11Q99590 1463 aaKnown RBP18.73■□□□□ 0.59
TCOF1-210ENST00000506767 TXNDC2Q86VQ3 553 aa18.73■□□□□ 0.59
TCOF1-210ENST00000506767 MED14O60244 1454 aa18.72■□□□□ 0.59
TCOF1-210ENST00000506767 HDGFP51858 240 aaKnown RBP18.72■□□□□ 0.59
TCOF1-210ENST00000506767 ZNF326Q5BKZ1 582 aaKnown RBP18.72■□□□□ 0.59
TCOF1-210ENST00000506767 SIN3AQ96ST3 1273 aa18.72■□□□□ 0.59
TCOF1-210ENST00000506767 EID1Q9Y6B2 187 aa18.72■□□□□ 0.59
TCOF1-210ENST00000506767 PPLO60437 1756 aa18.71■□□□□ 0.59
TCOF1-210ENST00000506767 ABCF1Q8NE71 845 aaKnown RBP eCLIP18.71■□□□□ 0.59
TCOF1-210ENST00000506767 IFT172Q9UG01 1749 aa18.71■□□□□ 0.59
TCOF1-210ENST00000506767 CLSPNQ9HAW4 1339 aa18.71■□□□□ 0.59
TCOF1-210ENST00000506767 RGL3Q3MIN7 710 aa18.7■□□□□ 0.58
TCOF1-210ENST00000506767 IQGAP1P46940 1657 aa18.66■□□□□ 0.58
TCOF1-210ENST00000506767 NPHP4O75161 1426 aaPredicted RBP18.66■□□□□ 0.58
TCOF1-210ENST00000506767 NUTM2DQ5VT03 806 aaPredicted RBP18.66■□□□□ 0.58
TCOF1-210ENST00000506767 DMRT2Q9Y5R5 561 aa18.66■□□□□ 0.58
TCOF1-210ENST00000506767 PLEKHG1Q9ULL1 1385 aa18.66■□□□□ 0.58
TCOF1-210ENST00000506767 VGFO15240 615 aaPredicted RBP18.65■□□□□ 0.58
TCOF1-210ENST00000506767 NEUROD1Q13562 356 aa18.65■□□□□ 0.58
TCOF1-210ENST00000506767 CCER1Q8TC90 406 aaPredicted RBP18.65■□□□□ 0.58
TCOF1-210ENST00000506767 CERKQ8TCT0 537 aa18.65■□□□□ 0.58
TCOF1-210ENST00000506767 PPP1R15AO75807 674 aaPredicted RBP18.64■□□□□ 0.57
TCOF1-210ENST00000506767 STAC3Q96MF2 364 aa18.63■□□□□ 0.57
TCOF1-210ENST00000506767 MYOM2P54296 1465 aa18.63■□□□□ 0.57
TCOF1-210ENST00000506767 NRXN1Q9ULB1 1477 aa18.62■□□□□ 0.57
TCOF1-210ENST00000506767 SETBP1Q9Y6X0 1596 aa18.62■□□□□ 0.57
TCOF1-210ENST00000506767 NRXN3Q9Y4C0 1643 aa18.62■□□□□ 0.57
TCOF1-210ENST00000506767 ADGRF5Q8IZF2 1346 aa18.61■□□□□ 0.57
TCOF1-210ENST00000506767 DCAF11Q8TEB1 546 aa18.61■□□□□ 0.57
TCOF1-210ENST00000506767 ADAMTS13Q76LX8 1427 aa18.6■□□□□ 0.57
TCOF1-210ENST00000506767 L3MBTL2Q969R5 705 aa18.6■□□□□ 0.57
TCOF1-210ENST00000506767 PIK3C2GO75747 1445 aa18.57■□□□□ 0.56
TCOF1-210ENST00000506767 DIP2AQ14689 1571 aa18.57■□□□□ 0.56
TCOF1-210ENST00000506767 TBX22Q9Y458 520 aa18.57■□□□□ 0.56
TCOF1-210ENST00000506767 SLC26A8Q96RN1 970 aa18.56■□□□□ 0.56
TCOF1-210ENST00000506767 KDM2AQ9Y2K7 1162 aa18.56■□□□□ 0.56
TCOF1-210ENST00000506767 SETD1AO15047 1707 aaKnown RBP18.55■□□□□ 0.56
TCOF1-210ENST00000506767 BCANQ96GW7 911 aa18.55■□□□□ 0.56
TCOF1-210ENST00000506767 ALKQ9UM73 1620 aa18.55■□□□□ 0.56
TCOF1-210ENST00000506767 TONSLQ96HA7 1378 aa18.55■□□□□ 0.56
TCOF1-210ENST00000506767 SENP3Q9H4L4 574 aaPredicted RBP18.54■□□□□ 0.56
TCOF1-210ENST00000506767 TIMELESSQ9UNS1 1208 aa18.54■□□□□ 0.56
TCOF1-210ENST00000506767 C14orf93Q9H972 538 aaKnown RBP18.52■□□□□ 0.56
TCOF1-210ENST00000506767 PRAG1Q86YV5 1406 aa18.51■□□□□ 0.55
TCOF1-210ENST00000506767 PIK3R4Q99570 1358 aa18.51■□□□□ 0.55
TCOF1-210ENST00000506767 LAMC1P11047 1609 aa18.5■□□□□ 0.55
TCOF1-210ENST00000506767 CHD2O14647 1828 aaKnown RBP18.5■□□□□ 0.55
TCOF1-210ENST00000506767 METP08581 1390 aa18.5■□□□□ 0.55
TCOF1-210ENST00000506767 ZNF335Q9H4Z2 1342 aaPredicted RBP18.49■□□□□ 0.55
TCOF1-210ENST00000506767 STRCP1A6NGW2 1772 aa18.48■□□□□ 0.55
TCOF1-210ENST00000506767 CFAP70Q5T0N1 1121 aa18.48■□□□□ 0.55
TCOF1-210ENST00000506767 KIAA1210Q9ULL0 1709 aa18.48■□□□□ 0.55
TCOF1-210ENST00000506767 NWD1Q149M9 1564 aa18.47■□□□□ 0.55
TCOF1-210ENST00000506767 KCNA6P17658 529 aa18.47■□□□□ 0.55
TCOF1-210ENST00000506767 LTBP4Q8N2S1 1624 aa18.47■□□□□ 0.55
TCOF1-210ENST00000506767 ASXL1Q8IXJ9 1541 aa18.47■□□□□ 0.55
TCOF1-210ENST00000506767 PTPRUQ92729 1446 aa18.47■□□□□ 0.55
TCOF1-210ENST00000506767 NBPF8Q3BBV2 869 aa18.45■□□□□ 0.54
TCOF1-210ENST00000506767 ADGRB1O14514 1584 aa18.45■□□□□ 0.54
TCOF1-210ENST00000506767 XRN1Q8IZH2 1706 aaKnown RBP18.44■□□□□ 0.54
TCOF1-210ENST00000506767 TRPM1Q7Z4N2 1603 aa18.43■□□□□ 0.54
TCOF1-210ENST00000506767 CPS1P31327 1500 aa18.43■□□□□ 0.54
TCOF1-210ENST00000506767 TMEM132EQ6IEE7 984 aa18.42■□□□□ 0.54
TCOF1-210ENST00000506767 AMOTL2Q9Y2J4 779 aa18.42■□□□□ 0.54
TCOF1-210ENST00000506767 NKTRP30414 1462 aaKnown RBP18.41■□□□□ 0.54
TCOF1-210ENST00000506767 LRPPRCP42704 1394 aaKnown RBP18.41■□□□□ 0.54
TCOF1-210ENST00000506767 NBPF1Q3BBV0 1214 aa18.4■□□□□ 0.54
TCOF1-210ENST00000506767 ABCC11Q96J66 1382 aa18.4■□□□□ 0.54
TCOF1-210ENST00000506767 TECPR2O15040 1411 aa18.4■□□□□ 0.54
TCOF1-210ENST00000506767 YTHDC2Q9H6S0 1430 aaKnown RBP18.4■□□□□ 0.54
TCOF1-210ENST00000506767 KNDC1Q76NI1 1749 aa18.39■□□□□ 0.53
TCOF1-210ENST00000506767 LRRC7Q96NW7 1537 aa18.38■□□□□ 0.53
TCOF1-210ENST00000506767 PTCH1Q13635 1447 aa18.37■□□□□ 0.53
TCOF1-210ENST00000506767 RALGAPBQ86X10 1494 aa18.37■□□□□ 0.53
TCOF1-210ENST00000506767 GPRASP1Q5JY77 1395 aa18.36■□□□□ 0.53
TCOF1-210ENST00000506767 XIRP1Q702N8 1843 aaKnown RBP18.35■□□□□ 0.53
TCOF1-210ENST00000506767 SIRT1Q96EB6 747 aa18.35■□□□□ 0.53
TCOF1-210ENST00000506767 DLC1Q96QB1 1528 aa18.34■□□□□ 0.53
TCOF1-210ENST00000506767 ROBO2Q9HCK4 1378 aa18.34■□□□□ 0.53
TCOF1-210ENST00000506767 PROSER2Q86WR7 435 aaPredicted RBP18.34■□□□□ 0.53
TCOF1-210ENST00000506767 STK26Q9P289 416 aa18.34■□□□□ 0.53
TCOF1-210ENST00000506767 NCOA3Q9Y6Q9 1424 aa18.33■□□□□ 0.53
TCOF1-210ENST00000506767 ROCK2O75116 1388 aaKnown RBP18.33■□□□□ 0.53
TCOF1-210ENST00000506767 FAM135BQ49AJ0 1406 aa18.32■□□□□ 0.52
TCOF1-210ENST00000506767 TMEM94Q12767 1356 aa18.32■□□□□ 0.52
TCOF1-210ENST00000506767 TRAK1Q9UPV9 953 aa18.31■□□□□ 0.52
TCOF1-210ENST00000506767 ARHGEF28Q8N1W1 1705 aaKnown RBP18.31■□□□□ 0.52
TCOF1-210ENST00000506767 IQSEC2Q5JU85 1478 aa18.31■□□□□ 0.52
TCOF1-210ENST00000506767 UBAP1LF5GYI3 381 aa18.3■□□□□ 0.52
TCOF1-210ENST00000506767 RBM33Q96EV2 1170 aaKnown RBP18.29■□□□□ 0.52
TCOF1-210ENST00000506767 WAPLQ7Z5K2 1190 aa18.28■□□□□ 0.52
TCOF1-210ENST00000506767 PLEKHH1Q9ULM0 1364 aa18.28■□□□□ 0.52
TCOF1-210ENST00000506767 CARD11Q9BXL7 1154 aa18.27■□□□□ 0.52
TCOF1-210ENST00000506767 SIPA1L2Q9P2F8 1722 aaPredicted RBP18.26■□□□□ 0.51
TCOF1-210ENST00000506767 PRAM1Q96QH2 718 aa18.26■□□□□ 0.51
TCOF1-210ENST00000506767 NALCNQ8IZF0 1738 aa18.25■□□□□ 0.51
TCOF1-210ENST00000506767 ADGRL3Q9HAR2 1447 aa18.24■□□□□ 0.51
TCOF1-210ENST00000506767 C19orf44Q9H6X5 657 aa18.24■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms