RNA–Protein interactions for RNA: ENST00000497580.5

GAPVD1-220, Transcript of GTPase activating protein and VPS9 domains 1, humanhuman

TSL 2

Gene GAPVD1, Length 3,720 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GAPVD1-220ENST00000497580 CENPJQ9HC77 1338 aaPredicted RBP16.5■□□□□ 0.23
GAPVD1-220ENST00000497580 DMRT2Q9Y5R5 561 aa16.5■□□□□ 0.23
GAPVD1-220ENST00000497580 ROCK1Q13464 1354 aa16.5■□□□□ 0.23
GAPVD1-220ENST00000497580 NCLP19338 710 aaKnown RBP16.5■□□□□ 0.23
GAPVD1-220ENST00000497580 EIF3AQ14152 1382 aaKnown RBP16.5■□□□□ 0.23
GAPVD1-220ENST00000497580 KIF14Q15058 1648 aa16.49■□□□□ 0.23
GAPVD1-220ENST00000497580 DISP3Q9P2K9 1392 aa16.49■□□□□ 0.23
GAPVD1-220ENST00000497580 HSP90AB1P08238 724 aaKnown RBP16.49■□□□□ 0.23
GAPVD1-220ENST00000497580 CALD1Q05682 793 aaKnown RBP16.48■□□□□ 0.23
GAPVD1-220ENST00000497580 TMF1P82094 1093 aa16.48■□□□□ 0.23
GAPVD1-220ENST00000497580 PCDHB15Q9Y5E8 787 aa16.48■□□□□ 0.23
GAPVD1-220ENST00000497580 NASPP49321 788 aaPredicted RBP16.47■□□□□ 0.23
GAPVD1-220ENST00000497580 RRP7AQ9Y3A4 280 aaKnown RBP16.47■□□□□ 0.23
GAPVD1-220ENST00000497580 EPRSP07814 1512 aaKnown RBP16.47■□□□□ 0.23
GAPVD1-220ENST00000497580 PRG4Q92954 1404 aaPredicted RBP16.46■□□□□ 0.23
GAPVD1-220ENST00000497580 PLEKHH2Q8IVE3 1493 aa16.46■□□□□ 0.23
GAPVD1-220ENST00000497580 ARHGEF11O15085 1522 aa16.46■□□□□ 0.23
GAPVD1-220ENST00000497580 TNPO1Q92973 898 aaKnown RBP16.46■□□□□ 0.23
GAPVD1-220ENST00000497580 PMFBP1Q8TBY8 1022 aa16.45■□□□□ 0.22
GAPVD1-220ENST00000497580 PLEKHD1A6NEE1 506 aa16.45■□□□□ 0.22
GAPVD1-220ENST00000497580 RIPK4P57078 832 aa16.45■□□□□ 0.22
GAPVD1-220ENST00000497580 ZSCAN30Q86W11 494 aa16.45■□□□□ 0.22
GAPVD1-220ENST00000497580 PRDM4Q9UKN5 801 aa16.45■□□□□ 0.22
GAPVD1-220ENST00000497580 XPCQ01831 940 aaPredicted RBP16.44■□□□□ 0.22
GAPVD1-220ENST00000497580 GBP4Q96PP9 640 aa16.44■□□□□ 0.22
GAPVD1-220ENST00000497580 CTTNBP2Q8WZ74 1663 aa16.44■□□□□ 0.22
GAPVD1-220ENST00000497580 E9PSI1 815 aa16.44■□□□□ 0.22
GAPVD1-220ENST00000497580 PDZRN4Q6ZMN7 1036 aaPredicted RBP16.44■□□□□ 0.22
GAPVD1-220ENST00000497580 TNNT2P45379 298 aaPredicted RBP16.43■□□□□ 0.22
GAPVD1-220ENST00000497580 UQCRHLA0A096LP55 91 aa16.43■□□□□ 0.22
GAPVD1-220ENST00000497580 UQCRHP07919 91 aa16.43■□□□□ 0.22
GAPVD1-220ENST00000497580 NLRP1Q9C000 1473 aa16.42■□□□□ 0.22
GAPVD1-220ENST00000497580 RLBP1P12271 317 aa16.42■□□□□ 0.22
GAPVD1-220ENST00000497580 PDE3AQ14432 1141 aa16.42■□□□□ 0.22
GAPVD1-220ENST00000497580 ZNF521Q96K83 1311 aa16.42■□□□□ 0.22
GAPVD1-220ENST00000497580 NKTRP30414 1462 aaKnown RBP16.41■□□□□ 0.22
GAPVD1-220ENST00000497580 RWDD1Q9H446 243 aaPredicted RBP16.41■□□□□ 0.22
GAPVD1-220ENST00000497580 CCDC173Q0VFZ6 552 aa16.41■□□□□ 0.22
GAPVD1-220ENST00000497580 DDX49Q9Y6V7 483 aaKnown RBP16.41■□□□□ 0.22
GAPVD1-220ENST00000497580 UHRF1BP1Q6BDS2 1440 aa16.4■□□□□ 0.22
GAPVD1-220ENST00000497580 OFD1O75665 1012 aa16.4■□□□□ 0.22
GAPVD1-220ENST00000497580 AAMPQ13685 434 aa16.4■□□□□ 0.22
GAPVD1-220ENST00000497580 ANKRD50Q9ULJ7 1429 aa16.4■□□□□ 0.22
GAPVD1-220ENST00000497580 KIAA0586Q9BVV6 1533 aa16.4■□□□□ 0.22
GAPVD1-220ENST00000497580 ANKRD30AQ9BXX3 1397 aa16.39■□□□□ 0.21
GAPVD1-220ENST00000497580 TESK2Q96S53 571 aa16.39■□□□□ 0.21
GAPVD1-220ENST00000497580 ERCC6Q03468 1493 aa16.38■□□□□ 0.21
GAPVD1-220ENST00000497580 ISY1Q9ULR0 285 aaKnown RBP16.38■□□□□ 0.21
GAPVD1-220ENST00000497580 CAMSAP2Q08AD1 1489 aa16.37■□□□□ 0.21
GAPVD1-220ENST00000497580 FTSJ3Q8IY81 847 aaKnown RBP16.37■□□□□ 0.21
GAPVD1-220ENST00000497580 GOLGA6L22H0YM25 854 aa16.37■□□□□ 0.21
GAPVD1-220ENST00000497580 ERBINQ96RT1 1412 aa16.35■□□□□ 0.21
GAPVD1-220ENST00000497580 SSFA2P28290 1259 aa16.35■□□□□ 0.21
GAPVD1-220ENST00000497580 SAMD9Q5K651 1589 aa16.35■□□□□ 0.21
GAPVD1-220ENST00000497580 ZNF608Q9ULD9 1512 aaPredicted RBP16.35■□□□□ 0.21
GAPVD1-220ENST00000497580 SKOR2Q2VWA4 1001 aaPredicted RBP16.34■□□□□ 0.21
GAPVD1-220ENST00000497580 DNTTIP2Q5QJE6 756 aaKnown RBP16.34■□□□□ 0.21
GAPVD1-220ENST00000497580 CAVIN1Q6NZI2 390 aaKnown RBP16.33■□□□□ 0.21
GAPVD1-220ENST00000497580 MPNDQ8N594 471 aa16.33■□□□□ 0.2
GAPVD1-220ENST00000497580 MAP7D2Q96T17 732 aa16.33■□□□□ 0.2
GAPVD1-220ENST00000497580 ZNF692Q9BU19 519 aaPredicted RBP16.33■□□□□ 0.2
GAPVD1-220ENST00000497580 CUL7Q14999 1698 aa16.33■□□□□ 0.2
GAPVD1-220ENST00000497580 TRMT2AQ8IZ69 625 aaKnown RBP16.32■□□□□ 0.2
GAPVD1-220ENST00000497580 DNMT1P26358 1616 aaKnown RBP16.32■□□□□ 0.2
GAPVD1-220ENST00000497580 RARSP54136 660 aaKnown RBP16.31■□□□□ 0.2
GAPVD1-220ENST00000497580 AMER1Q5JTC6 1135 aaPredicted RBP16.31■□□□□ 0.2
GAPVD1-220ENST00000497580 WWC1Q8IX03 1113 aa16.31■□□□□ 0.2
GAPVD1-220ENST00000497580 MCTP1Q6DN14 999 aa16.3■□□□□ 0.2
GAPVD1-220ENST00000497580 ITPRIPQ8IWB1 547 aa16.3■□□□□ 0.2
GAPVD1-220ENST00000497580 RBM42Q9BTD8 480 aaKnown RBP16.3■□□□□ 0.2
GAPVD1-220ENST00000497580 COL17A1Q9UMD9 1497 aaPredicted RBP16.3■□□□□ 0.2
GAPVD1-220ENST00000497580 PTMAP06454 111 aaKnown RBP16.3■□□□□ 0.2
GAPVD1-220ENST00000497580 CCDC144AA2RUR9 1427 aa16.3■□□□□ 0.2
GAPVD1-220ENST00000497580 INSRP06213 1382 aa16.29■□□□□ 0.2
GAPVD1-220ENST00000497580 TSC1Q92574 1164 aa16.29■□□□□ 0.2
GAPVD1-220ENST00000497580 LNPKQ9C0E8 428 aa16.29■□□□□ 0.2
GAPVD1-220ENST00000497580 IFT140Q96RY7 1462 aa16.29■□□□□ 0.2
GAPVD1-220ENST00000497580 JARID2Q92833 1246 aaPredicted RBP16.29■□□□□ 0.2
GAPVD1-220ENST00000497580 E9PCH4 1651 aa16.29■□□□□ 0.2
GAPVD1-220ENST00000497580 CHGAP10645 457 aaKnown RBP16.29■□□□□ 0.2
GAPVD1-220ENST00000497580 PLB1Q6P1J6 1458 aa16.28■□□□□ 0.2
GAPVD1-220ENST00000497580 RAB3GAP1Q15042 981 aa16.28■□□□□ 0.2
GAPVD1-220ENST00000497580 PPP1R9BQ96SB3 815 aa16.28■□□□□ 0.2
GAPVD1-220ENST00000497580 RNF214Q8ND24 703 aa16.28■□□□□ 0.2
GAPVD1-220ENST00000497580 FGD1P98174 961 aa16.28■□□□□ 0.2
GAPVD1-220ENST00000497580 JPH4Q96JJ6 628 aa16.28■□□□□ 0.2
GAPVD1-220ENST00000497580 PBRM1Q86U86 1689 aa16.27■□□□□ 0.2
GAPVD1-220ENST00000497580 CD2BP2O95400 341 aaKnown RBP16.27■□□□□ 0.2
GAPVD1-220ENST00000497580 PRAG1Q86YV5 1406 aa16.27■□□□□ 0.2
GAPVD1-220ENST00000497580 FOXD4L5Q5VV16 416 aaPredicted RBP16.27■□□□□ 0.19
GAPVD1-220ENST00000497580 FOXD4L4Q8WXT5 416 aaPredicted RBP16.27■□□□□ 0.19
GAPVD1-220ENST00000497580 CBX1P83916 185 aa16.26■□□□□ 0.19
GAPVD1-220ENST00000497580 SMAP1Q8IYB5 467 aaPredicted RBP16.26■□□□□ 0.19
GAPVD1-220ENST00000497580 TPRNQ4KMQ1 711 aa16.26■□□□□ 0.19
GAPVD1-220ENST00000497580 FAM177BA6PVY3 158 aa16.26■□□□□ 0.19
GAPVD1-220ENST00000497580 ARHGEF12Q9NZN5 1544 aa16.25■□□□□ 0.19
GAPVD1-220ENST00000497580 EIF4G3O43432 1585 aaKnown RBP16.25■□□□□ 0.19
GAPVD1-220ENST00000497580 RBM27Q9P2N5 1060 aaKnown RBP16.25■□□□□ 0.19
GAPVD1-220ENST00000497580 MAGI2Q86UL8 1455 aa16.24■□□□□ 0.19
GAPVD1-220ENST00000497580 RBSNQ9H1K0 784 aa16.24■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 84.1 ms