RNA–Protein interactions for RNA: ENST00000495497.1

HDAC4-212, Transcript of histone deacetylase 4, humanhuman

TSL 5

Gene HDAC4, Length 849 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-212ENST00000495497 NPHP4O75161 1426 aaPredicted RBP28.56■■■□□ 2.16
HDAC4-212ENST00000495497 POLR1AO95602 1720 aaPredicted RBP28.56■■■□□ 2.16
HDAC4-212ENST00000495497 ZFYVE9O95405 1425 aa28.55■■■□□ 2.16
HDAC4-212ENST00000495497 MED14O60244 1454 aa28.53■■■□□ 2.16
HDAC4-212ENST00000495497 PPP1R15AO75807 674 aaPredicted RBP28.51■■■□□ 2.15
HDAC4-212ENST00000495497 HDGFP51858 240 aaKnown RBP28.5■■■□□ 2.15
HDAC4-212ENST00000495497 KIF1BO60333 1816 aa28.5■■■□□ 2.15
HDAC4-212ENST00000495497 RGL3Q3MIN7 710 aa28.49■■■□□ 2.15
HDAC4-212ENST00000495497 ABCF1Q8NE71 845 aaKnown RBP eCLIP28.49■■■□□ 2.15
HDAC4-212ENST00000495497 DHX57Q6P158 1386 aaKnown RBP28.48■■■□□ 2.15
HDAC4-212ENST00000495497 BCANQ96GW7 911 aa28.47■■■□□ 2.15
HDAC4-212ENST00000495497 IQGAP1P46940 1657 aa28.46■■■□□ 2.15
HDAC4-212ENST00000495497 SPATA31E1Q6ZUB1 1445 aa28.45■■■□□ 2.15
HDAC4-212ENST00000495497 ZNF335Q9H4Z2 1342 aaPredicted RBP28.43■■■□□ 2.14
HDAC4-212ENST00000495497 SLC26A8Q96RN1 970 aa28.43■■■□□ 2.14
HDAC4-212ENST00000495497 NEXMIFQ5QGS0 1516 aa28.43■■■□□ 2.14
HDAC4-212ENST00000495497 PLEKHG1Q9ULL1 1385 aa28.42■■■□□ 2.14
HDAC4-212ENST00000495497 RPGRIP1LQ68CZ1 1315 aa28.41■■■□□ 2.14
HDAC4-212ENST00000495497 SIN3AQ96ST3 1273 aa28.35■■■□□ 2.13
HDAC4-212ENST00000495497 VGFO15240 615 aaPredicted RBP28.34■■■□□ 2.13
HDAC4-212ENST00000495497 ADAMTS13Q76LX8 1427 aa28.33■■■□□ 2.13
HDAC4-212ENST00000495497 ADGRF5Q8IZF2 1346 aa28.31■■■□□ 2.12
HDAC4-212ENST00000495497 LTBP4Q8N2S1 1624 aa28.31■■■□□ 2.12
HDAC4-212ENST00000495497 PPLO60437 1756 aa28.3■■■□□ 2.12
HDAC4-212ENST00000495497 TBX22Q9Y458 520 aa28.29■■■□□ 2.12
HDAC4-212ENST00000495497 NEUROD1Q13562 356 aa28.28■■■□□ 2.12
HDAC4-212ENST00000495497 NRXN3Q9Y4C0 1643 aa28.26■■■□□ 2.11
HDAC4-212ENST00000495497 SETBP1Q9Y6X0 1596 aa28.25■■■□□ 2.11
HDAC4-212ENST00000495497 CERKQ8TCT0 537 aa28.25■■■□□ 2.11
HDAC4-212ENST00000495497 DCAF11Q8TEB1 546 aa28.25■■■□□ 2.11
HDAC4-212ENST00000495497 KDM2AQ9Y2K7 1162 aa28.25■■■□□ 2.11
HDAC4-212ENST00000495497 IFT172Q9UG01 1749 aa28.23■■■□□ 2.11
HDAC4-212ENST00000495497 STRCP1A6NGW2 1772 aa28.22■■■□□ 2.11
HDAC4-212ENST00000495497 KCNA6P17658 529 aa28.22■■■□□ 2.11
HDAC4-212ENST00000495497 METP08581 1390 aa28.2■■■□□ 2.1
HDAC4-212ENST00000495497 DIP2AQ14689 1571 aa28.2■■■□□ 2.1
HDAC4-212ENST00000495497 PTPRUQ92729 1446 aa28.18■■■□□ 2.1
HDAC4-212ENST00000495497 MYOM2P54296 1465 aa28.17■■■□□ 2.1
HDAC4-212ENST00000495497 CPS1P31327 1500 aa28.17■■■□□ 2.1
HDAC4-212ENST00000495497 ALKQ9UM73 1620 aa28.16■■■□□ 2.1
HDAC4-212ENST00000495497 PIK3C2GO75747 1445 aa28.16■■■□□ 2.1
HDAC4-212ENST00000495497 AMOTL2Q9Y2J4 779 aa28.15■■■□□ 2.1
HDAC4-212ENST00000495497 NRXN1Q9ULB1 1477 aa28.15■■■□□ 2.1
HDAC4-212ENST00000495497 L3MBTL2Q969R5 705 aa28.14■■■□□ 2.1
HDAC4-212ENST00000495497 RBM33Q96EV2 1170 aaKnown RBP28.14■■■□□ 2.1
HDAC4-212ENST00000495497 PIK3R4Q99570 1358 aa28.13■■■□□ 2.09
HDAC4-212ENST00000495497 LRRC7Q96NW7 1537 aa28.13■■■□□ 2.09
HDAC4-212ENST00000495497 CFAP70Q5T0N1 1121 aa28.12■■■□□ 2.09
HDAC4-212ENST00000495497 NWD1Q149M9 1564 aa28.11■■■□□ 2.09
HDAC4-212ENST00000495497 CHD2O14647 1828 aaKnown RBP28.11■■■□□ 2.09
HDAC4-212ENST00000495497 PROSER2Q86WR7 435 aaPredicted RBP28.11■■■□□ 2.09
HDAC4-212ENST00000495497 SETD1AO15047 1707 aaKnown RBP28.09■■■□□ 2.09
HDAC4-212ENST00000495497 TMEM132EQ6IEE7 984 aa28.09■■■□□ 2.09
HDAC4-212ENST00000495497 C14orf93Q9H972 538 aaKnown RBP28.09■■■□□ 2.09
HDAC4-212ENST00000495497 STAC3Q96MF2 364 aa28.08■■■□□ 2.09
HDAC4-212ENST00000495497 TMEM94Q12767 1356 aa28.07■■■□□ 2.08
HDAC4-212ENST00000495497 CCER1Q8TC90 406 aaPredicted RBP28.06■■■□□ 2.08
HDAC4-212ENST00000495497 NKTRP30414 1462 aaKnown RBP28.06■■■□□ 2.08
HDAC4-212ENST00000495497 ASXL1Q8IXJ9 1541 aa28.03■■■□□ 2.08
HDAC4-212ENST00000495497 STK26Q9P289 416 aa28.03■■■□□ 2.08
HDAC4-212ENST00000495497 IQSEC2Q5JU85 1478 aa28.02■■■□□ 2.08
HDAC4-212ENST00000495497 XRN1Q8IZH2 1706 aaKnown RBP28.01■■■□□ 2.07
HDAC4-212ENST00000495497 TONSLQ96HA7 1378 aa28.01■■■□□ 2.07
HDAC4-212ENST00000495497 PRAG1Q86YV5 1406 aa27.99■■■□□ 2.07
HDAC4-212ENST00000495497 ROBO2Q9HCK4 1378 aa27.98■■■□□ 2.07
HDAC4-212ENST00000495497 XIRP1Q702N8 1843 aaKnown RBP27.97■■■□□ 2.07
HDAC4-212ENST00000495497 LRPPRCP42704 1394 aaKnown RBP27.97■■■□□ 2.07
HDAC4-212ENST00000495497 CLSPNQ9HAW4 1339 aa27.96■■■□□ 2.07
HDAC4-212ENST00000495497 YTHDC2Q9H6S0 1430 aaKnown RBP27.96■■■□□ 2.07
HDAC4-212ENST00000495497 UBAP1LF5GYI3 381 aa27.96■■■□□ 2.07
HDAC4-212ENST00000495497 LAMC1P11047 1609 aa27.94■■■□□ 2.06
HDAC4-212ENST00000495497 C14orf37Q86TY3 774 aa27.94■■■□□ 2.06
HDAC4-212ENST00000495497 FBXO41Q8TF61 875 aa27.94■■■□□ 2.06
HDAC4-212ENST00000495497 NBPF1Q3BBV0 1214 aa27.93■■■□□ 2.06
HDAC4-212ENST00000495497 ADGRB1O14514 1584 aa27.92■■■□□ 2.06
HDAC4-212ENST00000495497 ABCC11Q96J66 1382 aa27.92■■■□□ 2.06
HDAC4-212ENST00000495497 NBPF8Q3BBV2 869 aa27.92■■■□□ 2.06
HDAC4-212ENST00000495497 PTCH1Q13635 1447 aa27.92■■■□□ 2.06
HDAC4-212ENST00000495497 WAPLQ7Z5K2 1190 aa27.91■■■□□ 2.06
HDAC4-212ENST00000495497 TRAK1Q9UPV9 953 aa27.89■■■□□ 2.06
HDAC4-212ENST00000495497 TECPR2O15040 1411 aa27.89■■■□□ 2.06
HDAC4-212ENST00000495497 MSH6P52701 1360 aa27.88■■■□□ 2.05
HDAC4-212ENST00000495497 TOM1O60784 492 aa27.88■■■□□ 2.05
HDAC4-212ENST00000495497 NCOA3Q9Y6Q9 1424 aa27.88■■■□□ 2.05
HDAC4-212ENST00000495497 PLEKHH1Q9ULM0 1364 aa27.87■■■□□ 2.05
HDAC4-212ENST00000495497 PIP4K2BP78356 416 aa27.86■■■□□ 2.05
HDAC4-212ENST00000495497 ILDR1Q86SU0 546 aaPredicted RBP27.86■■■□□ 2.05
HDAC4-212ENST00000495497 C19orf44Q9H6X5 657 aa27.85■■■□□ 2.05
HDAC4-212ENST00000495497 SCAF1Q9H7N4 1312 aaKnown RBP27.83■■■□□ 2.05
HDAC4-212ENST00000495497 KNDC1Q76NI1 1749 aa27.82■■■□□ 2.04
HDAC4-212ENST00000495497 KIAA1210Q9ULL0 1709 aa27.82■■■□□ 2.04
HDAC4-212ENST00000495497 SAFB2Q14151 953 aaKnown RBP eCLIP27.82■■■□□ 2.04
HDAC4-212ENST00000495497 PRAM1Q96QH2 718 aa27.82■■■□□ 2.04
HDAC4-212ENST00000495497 SIRT1Q96EB6 747 aa27.81■■■□□ 2.04
HDAC4-212ENST00000495497 ADGRL3Q9HAR2 1447 aa27.81■■■□□ 2.04
HDAC4-212ENST00000495497 FAM135BQ49AJ0 1406 aa27.79■■■□□ 2.04
HDAC4-212ENST00000495497 ATF3P18847 181 aa27.79■■■□□ 2.04
HDAC4-212ENST00000495497 POGKQ9P215 609 aa27.79■■■□□ 2.04
HDAC4-212ENST00000495497 SIPA1L2Q9P2F8 1722 aaPredicted RBP27.78■■■□□ 2.04
HDAC4-212ENST00000495497 TRPM1Q7Z4N2 1603 aa27.78■■■□□ 2.04
Retrieved 100 of 20,778 RNA–protein pairs in 50.2 ms