RNA–Protein interactions for RNA: ENST00000494123.5

BRCA1-223, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 1,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-223ENST00000494123 ANKLE2Q86XL3 938 aa21.11■□□□□ 0.97
BRCA1-223ENST00000494123 POLR1AO95602 1720 aaPredicted RBP21.11■□□□□ 0.97
BRCA1-223ENST00000494123 PPP1R15AO75807 674 aaPredicted RBP21.1■□□□□ 0.97
BRCA1-223ENST00000494123 TXNDC2Q86VQ3 553 aa21.1■□□□□ 0.97
BRCA1-223ENST00000494123 RPGRIP1LQ68CZ1 1315 aa21.09■□□□□ 0.97
BRCA1-223ENST00000494123 ABCF1Q8NE71 845 aaKnown RBP eCLIP21.09■□□□□ 0.97
BRCA1-223ENST00000494123 ZFYVE9O95405 1425 aa21.09■□□□□ 0.97
BRCA1-223ENST00000494123 SCAF11Q99590 1463 aaKnown RBP21.09■□□□□ 0.97
BRCA1-223ENST00000494123 NEXMIFQ5QGS0 1516 aa21.08■□□□□ 0.97
BRCA1-223ENST00000494123 PPLO60437 1756 aa21.08■□□□□ 0.96
BRCA1-223ENST00000494123 NUTM2DQ5VT03 806 aaPredicted RBP21.07■□□□□ 0.96
BRCA1-223ENST00000494123 NCKAP5LQ9HCH0 1330 aa21.06■□□□□ 0.96
BRCA1-223ENST00000494123 LTKP29376 864 aa21.06■□□□□ 0.96
BRCA1-223ENST00000494123 IFT172Q9UG01 1749 aa21.06■□□□□ 0.96
BRCA1-223ENST00000494123 STRCQ7RTU9 1775 aa21.06■□□□□ 0.96
BRCA1-223ENST00000494123 VGFO15240 615 aaPredicted RBP21.04■□□□□ 0.96
BRCA1-223ENST00000494123 TONSLQ96HA7 1378 aa21.03■□□□□ 0.96
BRCA1-223ENST00000494123 DCAF11Q8TEB1 546 aa21.03■□□□□ 0.96
BRCA1-223ENST00000494123 BCANQ96GW7 911 aa21.03■□□□□ 0.96
BRCA1-223ENST00000494123 NPHP4O75161 1426 aaPredicted RBP21.01■□□□□ 0.95
BRCA1-223ENST00000494123 IQGAP1P46940 1657 aa21.01■□□□□ 0.95
BRCA1-223ENST00000494123 MED14O60244 1454 aa21■□□□□ 0.95
BRCA1-223ENST00000494123 SENP3Q9H4L4 574 aaPredicted RBP21■□□□□ 0.95
BRCA1-223ENST00000494123 KDM2AQ9Y2K7 1162 aa21■□□□□ 0.95
BRCA1-223ENST00000494123 PLEKHG1Q9ULL1 1385 aa21■□□□□ 0.95
BRCA1-223ENST00000494123 MYOM2P54296 1465 aa20.99■□□□□ 0.95
BRCA1-223ENST00000494123 L3MBTL2Q969R5 705 aa20.99■□□□□ 0.95
BRCA1-223ENST00000494123 DMRT2Q9Y5R5 561 aa20.99■□□□□ 0.95
BRCA1-223ENST00000494123 STAC3Q96MF2 364 aa20.97■□□□□ 0.95
BRCA1-223ENST00000494123 ADGRF5Q8IZF2 1346 aa20.96■□□□□ 0.95
BRCA1-223ENST00000494123 SETBP1Q9Y6X0 1596 aa20.94■□□□□ 0.94
BRCA1-223ENST00000494123 NRXN1Q9ULB1 1477 aa20.92■□□□□ 0.94
BRCA1-223ENST00000494123 NRXN3Q9Y4C0 1643 aa20.92■□□□□ 0.94
BRCA1-223ENST00000494123 SLC26A8Q96RN1 970 aa20.92■□□□□ 0.94
BRCA1-223ENST00000494123 TIMELESSQ9UNS1 1208 aa20.92■□□□□ 0.94
BRCA1-223ENST00000494123 PIK3C2GO75747 1445 aa20.91■□□□□ 0.94
BRCA1-223ENST00000494123 DIP2AQ14689 1571 aa20.91■□□□□ 0.94
BRCA1-223ENST00000494123 ADAMTS13Q76LX8 1427 aa20.89■□□□□ 0.94
BRCA1-223ENST00000494123 LAMC1P11047 1609 aa20.88■□□□□ 0.93
BRCA1-223ENST00000494123 ALKQ9UM73 1620 aa20.88■□□□□ 0.93
BRCA1-223ENST00000494123 PRAG1Q86YV5 1406 aa20.88■□□□□ 0.93
BRCA1-223ENST00000494123 TBX22Q9Y458 520 aa20.87■□□□□ 0.93
BRCA1-223ENST00000494123 SETD1AO15047 1707 aaKnown RBP20.84■□□□□ 0.93
BRCA1-223ENST00000494123 CFAP70Q5T0N1 1121 aa20.84■□□□□ 0.93
BRCA1-223ENST00000494123 C14orf93Q9H972 538 aaKnown RBP20.84■□□□□ 0.93
BRCA1-223ENST00000494123 KIAA1210Q9ULL0 1709 aa20.82■□□□□ 0.92
BRCA1-223ENST00000494123 PIK3R4Q99570 1358 aa20.82■□□□□ 0.92
BRCA1-223ENST00000494123 METP08581 1390 aa20.81■□□□□ 0.92
BRCA1-223ENST00000494123 TRPM1Q7Z4N2 1603 aa20.8■□□□□ 0.92
BRCA1-223ENST00000494123 CHD2O14647 1828 aaKnown RBP20.79■□□□□ 0.92
BRCA1-223ENST00000494123 ZNF335Q9H4Z2 1342 aaPredicted RBP20.79■□□□□ 0.92
BRCA1-223ENST00000494123 NBPF8Q3BBV2 869 aa20.78■□□□□ 0.92
BRCA1-223ENST00000494123 TMEM132EQ6IEE7 984 aa20.78■□□□□ 0.92
BRCA1-223ENST00000494123 ASXL1Q8IXJ9 1541 aa20.77■□□□□ 0.92
BRCA1-223ENST00000494123 KCNA6P17658 529 aa20.76■□□□□ 0.91
BRCA1-223ENST00000494123 NWD1Q149M9 1564 aa20.76■□□□□ 0.91
BRCA1-223ENST00000494123 ROCK2O75116 1388 aaKnown RBP20.75■□□□□ 0.91
BRCA1-223ENST00000494123 AMOTL2Q9Y2J4 779 aa20.75■□□□□ 0.91
BRCA1-223ENST00000494123 PTPRUQ92729 1446 aa20.74■□□□□ 0.91
BRCA1-223ENST00000494123 ADGRB1O14514 1584 aa20.74■□□□□ 0.91
BRCA1-223ENST00000494123 STRCP1A6NGW2 1772 aa20.74■□□□□ 0.91
BRCA1-223ENST00000494123 YTHDC2Q9H6S0 1430 aaKnown RBP20.74■□□□□ 0.91
BRCA1-223ENST00000494123 STK26Q9P289 416 aa20.74■□□□□ 0.91
BRCA1-223ENST00000494123 RALGAPBQ86X10 1494 aa20.73■□□□□ 0.91
BRCA1-223ENST00000494123 XRN1Q8IZH2 1706 aaKnown RBP20.73■□□□□ 0.91
BRCA1-223ENST00000494123 NBPF1Q3BBV0 1214 aa20.73■□□□□ 0.91
BRCA1-223ENST00000494123 LRPPRCP42704 1394 aaKnown RBP20.72■□□□□ 0.91
BRCA1-223ENST00000494123 NKTRP30414 1462 aaKnown RBP20.71■□□□□ 0.91
BRCA1-223ENST00000494123 CPS1P31327 1500 aa20.71■□□□□ 0.91
BRCA1-223ENST00000494123 KNDC1Q76NI1 1749 aa20.7■□□□□ 0.9
BRCA1-223ENST00000494123 ABCC11Q96J66 1382 aa20.68■□□□□ 0.9
BRCA1-223ENST00000494123 CARD11Q9BXL7 1154 aa20.68■□□□□ 0.9
BRCA1-223ENST00000494123 LTBP4Q8N2S1 1624 aa20.68■□□□□ 0.9
BRCA1-223ENST00000494123 PROSER2Q86WR7 435 aaPredicted RBP20.67■□□□□ 0.9
BRCA1-223ENST00000494123 TRAK1Q9UPV9 953 aa20.67■□□□□ 0.9
BRCA1-223ENST00000494123 TECPR2O15040 1411 aa20.67■□□□□ 0.9
BRCA1-223ENST00000494123 PTCH1Q13635 1447 aa20.67■□□□□ 0.9
BRCA1-223ENST00000494123 ZEB1P37275 1124 aaPredicted RBP20.67■□□□□ 0.9
BRCA1-223ENST00000494123 GPRASP1Q5JY77 1395 aa20.66■□□□□ 0.9
BRCA1-223ENST00000494123 ROBO2Q9HCK4 1378 aa20.65■□□□□ 0.9
BRCA1-223ENST00000494123 DLC1Q96QB1 1528 aa20.64■□□□□ 0.9
BRCA1-223ENST00000494123 LRRC7Q96NW7 1537 aa20.64■□□□□ 0.89
BRCA1-223ENST00000494123 ARHGEF28Q8N1W1 1705 aaKnown RBP20.63■□□□□ 0.89
BRCA1-223ENST00000494123 POGKQ9P215 609 aa20.63■□□□□ 0.89
BRCA1-223ENST00000494123 TMEM94Q12767 1356 aa20.62■□□□□ 0.89
BRCA1-223ENST00000494123 EIF3AQ14152 1382 aaKnown RBP20.62■□□□□ 0.89
BRCA1-223ENST00000494123 C14orf37Q86TY3 774 aa20.61■□□□□ 0.89
BRCA1-223ENST00000494123 SIRT1Q96EB6 747 aa20.61■□□□□ 0.89
BRCA1-223ENST00000494123 RBM33Q96EV2 1170 aaKnown RBP20.61■□□□□ 0.89
BRCA1-223ENST00000494123 PRAM1Q96QH2 718 aa20.61■□□□□ 0.89
BRCA1-223ENST00000494123 FAM135BQ49AJ0 1406 aa20.61■□□□□ 0.89
BRCA1-223ENST00000494123 WAPLQ7Z5K2 1190 aa20.6■□□□□ 0.89
BRCA1-223ENST00000494123 XIRP1Q702N8 1843 aaKnown RBP20.59■□□□□ 0.89
BRCA1-223ENST00000494123 SAFB2Q14151 953 aaKnown RBP eCLIP20.59■□□□□ 0.893e-6■□□□□ 8.3
BRCA1-223ENST00000494123 PLEKHH1Q9ULM0 1364 aa20.58■□□□□ 0.89
BRCA1-223ENST00000494123 NCOA3Q9Y6Q9 1424 aa20.58■□□□□ 0.88
BRCA1-223ENST00000494123 CENPJQ9HC77 1338 aaPredicted RBP20.56■□□□□ 0.88
BRCA1-223ENST00000494123 USP47Q96K76 1375 aa20.55■□□□□ 0.88
BRCA1-223ENST00000494123 NALCNQ8IZF0 1738 aa20.55■□□□□ 0.88
BRCA1-223ENST00000494123 CERKQ8TCT0 537 aa20.55■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 54 ms