RNA–Protein interactions for RNA: ENST00000492996.6

HERC4-211, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase 4, humanhuman

TSL 1 (best) BASIC

Gene HERC4, Length 3,385 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC4-211ENST00000492996 PTCH1Q13635 1447 aa10.57□□□□□ -0.72
HERC4-211ENST00000492996 CLTCL1P53675 1640 aa10.56□□□□□ -0.72
HERC4-211ENST00000492996 MYOM2P54296 1465 aa10.56□□□□□ -0.72
HERC4-211ENST00000492996 TOPAZ1Q8N9V7 1692 aa10.55□□□□□ -0.72
HERC4-211ENST00000492996 FMN2Q9NZ56 1722 aa10.54□□□□□ -0.72
HERC4-211ENST00000492996 SIPA1L2Q9P2F8 1722 aaPredicted RBP10.54□□□□□ -0.72
HERC4-211ENST00000492996 NWD2Q9ULI1 1742 aa10.53□□□□□ -0.72
HERC4-211ENST00000492996 ABCC6O95255 1503 aa10.52□□□□□ -0.73
HERC4-211ENST00000492996 CERKQ8TCT0 537 aa10.52□□□□□ -0.73
HERC4-211ENST00000492996 SCAF1Q9H7N4 1312 aaKnown RBP10.5□□□□□ -0.73
HERC4-211ENST00000492996 ANKRD30AQ9BXX3 1397 aa10.5□□□□□ -0.73
HERC4-211ENST00000492996 ROBO1Q9Y6N7 1651 aa10.5□□□□□ -0.73
HERC4-211ENST00000492996 HFM1A2PYH4 1435 aa10.49□□□□□ -0.73
HERC4-211ENST00000492996 COL24A1Q17RW2 1714 aa10.49□□□□□ -0.73
HERC4-211ENST00000492996 TMEM2Q9UHN6 1383 aa10.48□□□□□ -0.73
HERC4-211ENST00000492996 TRPM3Q9HCF6 1732 aaPredicted RBP10.48□□□□□ -0.73
HERC4-211ENST00000492996 KANK4Q5T7N3 995 aaPredicted RBP10.48□□□□□ -0.73
HERC4-211ENST00000492996 PHLPP1O60346 1717 aa10.47□□□□□ -0.73
HERC4-211ENST00000492996 WNK3Q9BYP7 1800 aa10.47□□□□□ -0.73
HERC4-211ENST00000492996 ITSN1Q15811 1721 aa10.47□□□□□ -0.73
HERC4-211ENST00000492996 ADAMTS13Q76LX8 1427 aa10.46□□□□□ -0.74
HERC4-211ENST00000492996 P3H3Q8IVL6 736 aa10.45□□□□□ -0.74
HERC4-211ENST00000492996 KIF15Q9NS87 1388 aa10.45□□□□□ -0.74
HERC4-211ENST00000492996 KCNH8Q96L42 1107 aa10.44□□□□□ -0.74
HERC4-211ENST00000492996 NRAPQ86VF7 1730 aa10.44□□□□□ -0.74
HERC4-211ENST00000492996 PLCH1Q4KWH8 1693 aa10.44□□□□□ -0.74
HERC4-211ENST00000492996 PHRF1Q9P1Y6 1649 aaKnown RBP10.44□□□□□ -0.74
HERC4-211ENST00000492996 CFDP1Q9UEE9 299 aaPredicted RBP10.43□□□□□ -0.74
HERC4-211ENST00000492996 TRPM1Q7Z4N2 1603 aa10.43□□□□□ -0.74
HERC4-211ENST00000492996 AFAP1Q8N556 730 aa10.43□□□□□ -0.74
HERC4-211ENST00000492996 ALS2Q96Q42 1657 aa10.43□□□□□ -0.74
HERC4-211ENST00000492996 ATP1B4Q9UN42 357 aaPredicted RBP10.43□□□□□ -0.74
HERC4-211ENST00000492996 ILDR1Q86SU0 546 aaPredicted RBP10.42□□□□□ -0.74
HERC4-211ENST00000492996 SETD5Q9C0A6 1442 aa10.41□□□□□ -0.74
HERC4-211ENST00000492996 ITGAEP38570 1179 aa10.41□□□□□ -0.74
HERC4-211ENST00000492996 SIRT1Q96EB6 747 aa10.41□□□□□ -0.74
HERC4-211ENST00000492996 SLC52A1Q9NWF4 448 aa10.41□□□□□ -0.74
HERC4-211ENST00000492996 KANK1Q14678 1352 aa10.4□□□□□ -0.74
HERC4-211ENST00000492996 LRP5O75197 1615 aa10.4□□□□□ -0.74
HERC4-211ENST00000492996 ANKRD50Q9ULJ7 1429 aa10.4□□□□□ -0.75
HERC4-211ENST00000492996 QSER1Q2KHR3 1735 aa10.39□□□□□ -0.75
HERC4-211ENST00000492996 ASXL1Q8IXJ9 1541 aa10.38□□□□□ -0.75
HERC4-211ENST00000492996 SPATA31E1Q6ZUB1 1445 aa10.38□□□□□ -0.75
HERC4-211ENST00000492996 RPGRIP1LQ68CZ1 1315 aa10.37□□□□□ -0.75
HERC4-211ENST00000492996 NAIPQ13075 1403 aa10.36□□□□□ -0.75
HERC4-211ENST00000492996 ADGRB1O14514 1584 aa10.36□□□□□ -0.75
HERC4-211ENST00000492996 THEMISQ8N1K5 641 aaPredicted RBP10.35□□□□□ -0.75
HERC4-211ENST00000492996 ARHGEF28Q8N1W1 1705 aaKnown RBP10.35□□□□□ -0.75
HERC4-211ENST00000492996 USP32Q8NFA0 1604 aa10.35□□□□□ -0.75
HERC4-211ENST00000492996 DIEXFQ68CQ4 756 aaKnown RBP10.34□□□□□ -0.75
HERC4-211ENST00000492996 STAC3Q96MF2 364 aa10.34□□□□□ -0.75
HERC4-211ENST00000492996 NRKQ7Z2Y5 1582 aa10.33□□□□□ -0.76
HERC4-211ENST00000492996 THSD7AQ9UPZ6 1657 aa10.33□□□□□ -0.76
HERC4-211ENST00000492996 BRD4O60885 1362 aaPredicted RBP10.31□□□□□ -0.76
HERC4-211ENST00000492996 RREB1Q92766 1687 aa10.31□□□□□ -0.76
HERC4-211ENST00000492996 TBX22Q9Y458 520 aa10.31□□□□□ -0.76
HERC4-211ENST00000492996 ADGRL3Q9HAR2 1447 aa10.31□□□□□ -0.76
HERC4-211ENST00000492996 RIMS2Q9UQ26 1411 aa10.31□□□□□ -0.76
HERC4-211ENST00000492996 AKAP12Q02952 1782 aa10.31□□□□□ -0.76
HERC4-211ENST00000492996 PIK3C2GO75747 1445 aa10.3□□□□□ -0.76
HERC4-211ENST00000492996 QRICH2Q9H0J4 1663 aa10.3□□□□□ -0.76
HERC4-211ENST00000492996 ANKARQ7Z5J8 1434 aa10.3□□□□□ -0.76
HERC4-211ENST00000492996 HNRNPMP52272 730 aaKnown RBP eCLIP10.29□□□□□ -0.761e-6■■■■□ 20.7
HERC4-211ENST00000492996 ZNF316A6NFI3 1004 aaPredicted RBP10.29□□□□□ -0.76
HERC4-211ENST00000492996 ABCF1Q8NE71 845 aaKnown RBP eCLIP10.29□□□□□ -0.76
HERC4-211ENST00000492996 KCNA6P17658 529 aa10.28□□□□□ -0.76
HERC4-211ENST00000492996 FAM50AQ14320 339 aaKnown RBP10.28□□□□□ -0.76
HERC4-211ENST00000492996 PXDNQ92626 1479 aa10.28□□□□□ -0.76
HERC4-211ENST00000492996 FAM208AQ9UK61 1670 aaKnown RBP10.28□□□□□ -0.76
HERC4-211ENST00000492996 CICQ96RK0 1608 aaPredicted RBP10.28□□□□□ -0.76
HERC4-211ENST00000492996 CAMTA1Q9Y6Y1 1673 aa10.27□□□□□ -0.76
HERC4-211ENST00000492996 COL14A1Q05707 1796 aaKnown RBP10.27□□□□□ -0.77
HERC4-211ENST00000492996 RGPD1P0DJD0 1748 aa10.27□□□□□ -0.77
HERC4-211ENST00000492996 LMO7Q8WWI1 1683 aa10.26□□□□□ -0.77
HERC4-211ENST00000492996 PTPRUQ92729 1446 aa10.26□□□□□ -0.77
HERC4-211ENST00000492996 ANKLE2Q86XL3 938 aa10.26□□□□□ -0.77
HERC4-211ENST00000492996 DHX57Q6P158 1386 aaKnown RBP10.25□□□□□ -0.77
HERC4-211ENST00000492996 PARP4Q9UKK3 1724 aaKnown RBP10.24□□□□□ -0.77
HERC4-211ENST00000492996 ZNF644Q9H582 1327 aaPredicted RBP10.24□□□□□ -0.77
HERC4-211ENST00000492996 TSPY4P0CV99 314 aa10.24□□□□□ -0.77
HERC4-211ENST00000492996 TSPY10P0CW01 314 aa10.24□□□□□ -0.77
HERC4-211ENST00000492996 BCL11AQ9H165 835 aa10.24□□□□□ -0.77
HERC4-211ENST00000492996 ANKRD26Q9UPS8 1709 aa10.24□□□□□ -0.77
HERC4-211ENST00000492996 LRP6O75581 1613 aa10.24□□□□□ -0.77
HERC4-211ENST00000492996 PEAK1Q9H792 1746 aa10.23□□□□□ -0.77
HERC4-211ENST00000492996 ZNF831Q5JPB2 1677 aa10.23□□□□□ -0.77
HERC4-211ENST00000492996 PLEKHG2Q9H7P9 1386 aa10.23□□□□□ -0.77
HERC4-211ENST00000492996 MON2Q7Z3U7 1717 aa10.23□□□□□ -0.77
HERC4-211ENST00000492996 TNS1Q9HBL0 1735 aaKnown RBP10.23□□□□□ -0.77
HERC4-211ENST00000492996 PRKCSHP14314 528 aaPredicted RBP10.23□□□□□ -0.77
HERC4-211ENST00000492996 GLI3P10071 1580 aa10.22□□□□□ -0.77
HERC4-211ENST00000492996 SPATA31A6Q5VVP1 1343 aa10.22□□□□□ -0.77
HERC4-211ENST00000492996 CCDC144AA2RUR9 1427 aa10.21□□□□□ -0.77
HERC4-211ENST00000492996 ATP7BP35670 1465 aa10.2□□□□□ -0.78
HERC4-211ENST00000492996 ANKRD30BQ9BXX2 1392 aa10.2□□□□□ -0.78
HERC4-211ENST00000492996 ARID3CA6NKF2 412 aa10.2□□□□□ -0.78
HERC4-211ENST00000492996 ABCC11Q96J66 1382 aa10.19□□□□□ -0.78
HERC4-211ENST00000492996 HDGFP51858 240 aaKnown RBP10.19□□□□□ -0.78
HERC4-211ENST00000492996 DISP2A7MBM2 1401 aa10.19□□□□□ -0.78
HERC4-211ENST00000492996 COL18A1P39060 1754 aa10.19□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 43 ms