RNA–Protein interactions for RNA: ENST00000491552.1

MSH5-SAPCD1-206, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

TSL 3

Gene MSH5-SAPCD1, Length 706 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-206ENST00000491552 HDGFP51858 240 aaKnown RBP24.06■■□□□ 1.44
MSH5-SAPCD1-206ENST00000491552 CCDC144AA2RUR9 1427 aa24.05■■□□□ 1.44
MSH5-SAPCD1-206ENST00000491552 LTBP4Q8N2S1 1624 aa24.04■■□□□ 1.44
MSH5-SAPCD1-206ENST00000491552 ABCF1Q8NE71 845 aaKnown RBP eCLIP24.04■■□□□ 1.44
MSH5-SAPCD1-206ENST00000491552 ZNF335Q9H4Z2 1342 aaPredicted RBP24.04■■□□□ 1.44
MSH5-SAPCD1-206ENST00000491552 PPP1R15AO75807 674 aaPredicted RBP24.03■■□□□ 1.44
MSH5-SAPCD1-206ENST00000491552 ZNF326Q5BKZ1 582 aaKnown RBP24.02■■□□□ 1.44
MSH5-SAPCD1-206ENST00000491552 PLEKHG1Q9ULL1 1385 aa24.01■■□□□ 1.43
MSH5-SAPCD1-206ENST00000491552 NEXMIFQ5QGS0 1516 aa23.99■■□□□ 1.43
MSH5-SAPCD1-206ENST00000491552 NUTM2DQ5VT03 806 aaPredicted RBP23.97■■□□□ 1.43
MSH5-SAPCD1-206ENST00000491552 CERKQ8TCT0 537 aa23.97■■□□□ 1.43
MSH5-SAPCD1-206ENST00000491552 BCANQ96GW7 911 aa23.96■■□□□ 1.43
MSH5-SAPCD1-206ENST00000491552 CPS1P31327 1500 aa23.94■■□□□ 1.42
MSH5-SAPCD1-206ENST00000491552 ANKRD30BQ9BXX2 1392 aa23.94■■□□□ 1.42
MSH5-SAPCD1-206ENST00000491552 SPATA31E1Q6ZUB1 1445 aa23.93■■□□□ 1.42
MSH5-SAPCD1-206ENST00000491552 SLC26A8Q96RN1 970 aa23.93■■□□□ 1.42
MSH5-SAPCD1-206ENST00000491552 RPGRIP1LQ68CZ1 1315 aa23.92■■□□□ 1.42
MSH5-SAPCD1-206ENST00000491552 SENP3Q9H4L4 574 aaPredicted RBP23.92■■□□□ 1.42
MSH5-SAPCD1-206ENST00000491552 DIP2AQ14689 1571 aa23.91■■□□□ 1.42
MSH5-SAPCD1-206ENST00000491552 STRCP1A6NGW2 1772 aa23.91■■□□□ 1.42
MSH5-SAPCD1-206ENST00000491552 IQSEC2Q5JU85 1478 aa23.9■■□□□ 1.42
MSH5-SAPCD1-206ENST00000491552 ADAMTS13Q76LX8 1427 aa23.9■■□□□ 1.42
MSH5-SAPCD1-206ENST00000491552 PPLO60437 1756 aa23.9■■□□□ 1.42
MSH5-SAPCD1-206ENST00000491552 SETBP1Q9Y6X0 1596 aa23.9■■□□□ 1.42
MSH5-SAPCD1-206ENST00000491552 NRXN3Q9Y4C0 1643 aa23.88■■□□□ 1.41
MSH5-SAPCD1-206ENST00000491552 RGL3Q3MIN7 710 aa23.87■■□□□ 1.41
MSH5-SAPCD1-206ENST00000491552 TBX22Q9Y458 520 aa23.87■■□□□ 1.41
MSH5-SAPCD1-206ENST00000491552 VGFO15240 615 aaPredicted RBP23.86■■□□□ 1.41
MSH5-SAPCD1-206ENST00000491552 NWD1Q149M9 1564 aa23.86■■□□□ 1.41
MSH5-SAPCD1-206ENST00000491552 IFT172Q9UG01 1749 aa23.85■■□□□ 1.41
MSH5-SAPCD1-206ENST00000491552 KCNA6P17658 529 aa23.83■■□□□ 1.41
MSH5-SAPCD1-206ENST00000491552 LRRC7Q96NW7 1537 aa23.82■■□□□ 1.4
MSH5-SAPCD1-206ENST00000491552 PIK3R4Q99570 1358 aa23.81■■□□□ 1.4
MSH5-SAPCD1-206ENST00000491552 FBXO41Q8TF61 875 aa23.81■■□□□ 1.4
MSH5-SAPCD1-206ENST00000491552 CHD2O14647 1828 aaKnown RBP23.81■■□□□ 1.4
MSH5-SAPCD1-206ENST00000491552 NKTRP30414 1462 aaKnown RBP23.81■■□□□ 1.4
MSH5-SAPCD1-206ENST00000491552 DHX57Q6P158 1386 aaKnown RBP23.78■■□□□ 1.4
MSH5-SAPCD1-206ENST00000491552 ADGRF5Q8IZF2 1346 aa23.76■■□□□ 1.39
MSH5-SAPCD1-206ENST00000491552 ALKQ9UM73 1620 aa23.76■■□□□ 1.39
MSH5-SAPCD1-206ENST00000491552 SETD1AO15047 1707 aaKnown RBP23.76■■□□□ 1.39
MSH5-SAPCD1-206ENST00000491552 MYOM2P54296 1465 aa23.75■■□□□ 1.39
MSH5-SAPCD1-206ENST00000491552 METP08581 1390 aa23.74■■□□□ 1.39
MSH5-SAPCD1-206ENST00000491552 PTPRUQ92729 1446 aa23.74■■□□□ 1.39
MSH5-SAPCD1-206ENST00000491552 ILDR1Q86SU0 546 aaPredicted RBP23.73■■□□□ 1.39
MSH5-SAPCD1-206ENST00000491552 XIRP1Q702N8 1843 aaKnown RBP23.73■■□□□ 1.39
MSH5-SAPCD1-206ENST00000491552 PROSER2Q86WR7 435 aaPredicted RBP23.72■■□□□ 1.39
MSH5-SAPCD1-206ENST00000491552 PIK3C2GO75747 1445 aa23.72■■□□□ 1.39
MSH5-SAPCD1-206ENST00000491552 XRN1Q8IZH2 1706 aaKnown RBP23.72■■□□□ 1.39
MSH5-SAPCD1-206ENST00000491552 NRXN1Q9ULB1 1477 aa23.71■■□□□ 1.39
MSH5-SAPCD1-206ENST00000491552 TMEM94Q12767 1356 aa23.71■■□□□ 1.39
MSH5-SAPCD1-206ENST00000491552 PCGF6Q9BYE7 350 aa23.71■■□□□ 1.39
MSH5-SAPCD1-206ENST00000491552 AMOTL2Q9Y2J4 779 aa23.7■■□□□ 1.38
MSH5-SAPCD1-206ENST00000491552 UBAP1LF5GYI3 381 aa23.68■■□□□ 1.38
MSH5-SAPCD1-206ENST00000491552 DCAF11Q8TEB1 546 aa23.66■■□□□ 1.38
MSH5-SAPCD1-206ENST00000491552 RBM33Q96EV2 1170 aaKnown RBP23.65■■□□□ 1.38
MSH5-SAPCD1-206ENST00000491552 LAMC1P11047 1609 aa23.65■■□□□ 1.38
MSH5-SAPCD1-206ENST00000491552 STAC3Q96MF2 364 aa23.64■■□□□ 1.37
MSH5-SAPCD1-206ENST00000491552 TOM1O60784 492 aa23.63■■□□□ 1.37
MSH5-SAPCD1-206ENST00000491552 KDM2AQ9Y2K7 1162 aa23.63■■□□□ 1.37
MSH5-SAPCD1-206ENST00000491552 NCOA3Q9Y6Q9 1424 aa23.63■■□□□ 1.37
MSH5-SAPCD1-206ENST00000491552 ASXL1Q8IXJ9 1541 aa23.63■■□□□ 1.37
MSH5-SAPCD1-206ENST00000491552 SIN3AQ96ST3 1273 aa23.62■■□□□ 1.37
MSH5-SAPCD1-206ENST00000491552 PRAG1Q86YV5 1406 aa23.61■■□□□ 1.37
MSH5-SAPCD1-206ENST00000491552 PTCH1Q13635 1447 aa23.6■■□□□ 1.37
MSH5-SAPCD1-206ENST00000491552 C14orf93Q9H972 538 aaKnown RBP23.6■■□□□ 1.37
MSH5-SAPCD1-206ENST00000491552 MSH6P52701 1360 aa23.6■■□□□ 1.37
MSH5-SAPCD1-206ENST00000491552 NEUROD1Q13562 356 aa23.58■■□□□ 1.37
MSH5-SAPCD1-206ENST00000491552 CFAP70Q5T0N1 1121 aa23.58■■□□□ 1.37
MSH5-SAPCD1-206ENST00000491552 C14orf37Q86TY3 774 aa23.57■■□□□ 1.36
MSH5-SAPCD1-206ENST00000491552 LRPPRCP42704 1394 aaKnown RBP23.56■■□□□ 1.36
MSH5-SAPCD1-206ENST00000491552 TMEM132EQ6IEE7 984 aa23.56■■□□□ 1.36
MSH5-SAPCD1-206ENST00000491552 KNDC1Q76NI1 1749 aa23.56■■□□□ 1.36
MSH5-SAPCD1-206ENST00000491552 ROBO2Q9HCK4 1378 aa23.55■■□□□ 1.36
MSH5-SAPCD1-206ENST00000491552 PIP4K2BP78356 416 aa23.55■■□□□ 1.36
MSH5-SAPCD1-206ENST00000491552 SCAF1Q9H7N4 1312 aaKnown RBP23.55■■□□□ 1.36
MSH5-SAPCD1-206ENST00000491552 TECPR2O15040 1411 aa23.54■■□□□ 1.36
MSH5-SAPCD1-206ENST00000491552 YTHDC2Q9H6S0 1430 aaKnown RBP23.54■■□□□ 1.36
MSH5-SAPCD1-206ENST00000491552 SIPA1L2Q9P2F8 1722 aaPredicted RBP23.53■■□□□ 1.36
MSH5-SAPCD1-206ENST00000491552 ABCC11Q96J66 1382 aa23.52■■□□□ 1.36
MSH5-SAPCD1-206ENST00000491552 L3MBTL2Q969R5 705 aa23.52■■□□□ 1.36
MSH5-SAPCD1-206ENST00000491552 STK26Q9P289 416 aa23.52■■□□□ 1.36
MSH5-SAPCD1-206ENST00000491552 ADGRB1O14514 1584 aa23.52■■□□□ 1.36
MSH5-SAPCD1-206ENST00000491552 ADGRL3Q9HAR2 1447 aa23.51■■□□□ 1.35
MSH5-SAPCD1-206ENST00000491552 NALCNQ8IZF0 1738 aa23.51■■□□□ 1.35
MSH5-SAPCD1-206ENST00000491552 C19orf44Q9H6X5 657 aa23.51■■□□□ 1.35
MSH5-SAPCD1-206ENST00000491552 DCCP43146 1447 aa23.5■■□□□ 1.35
MSH5-SAPCD1-206ENST00000491552 KIAA1210Q9ULL0 1709 aa23.48■■□□□ 1.35
MSH5-SAPCD1-206ENST00000491552 CADPS2Q86UW7 1296 aa23.48■■□□□ 1.35
MSH5-SAPCD1-206ENST00000491552 ATF3P18847 181 aa23.47■■□□□ 1.35
MSH5-SAPCD1-206ENST00000491552 FAM135BQ49AJ0 1406 aa23.45■■□□□ 1.34
MSH5-SAPCD1-206ENST00000491552 TONSLQ96HA7 1378 aa23.45■■□□□ 1.34
MSH5-SAPCD1-206ENST00000491552 DLC1Q96QB1 1528 aa23.44■■□□□ 1.34
MSH5-SAPCD1-206ENST00000491552 WAPLQ7Z5K2 1190 aa23.43■■□□□ 1.34
MSH5-SAPCD1-206ENST00000491552 SIRT1Q96EB6 747 aa23.43■■□□□ 1.34
MSH5-SAPCD1-206ENST00000491552 SLAIN2Q9P270 581 aa23.43■■□□□ 1.34
MSH5-SAPCD1-206ENST00000491552 PLEKHH1Q9ULM0 1364 aa23.42■■□□□ 1.34
MSH5-SAPCD1-206ENST00000491552 ROBO1Q9Y6N7 1651 aa23.42■■□□□ 1.34
MSH5-SAPCD1-206ENST00000491552 CLSPNQ9HAW4 1339 aa23.4■■□□□ 1.34
MSH5-SAPCD1-206ENST00000491552 CDC42BPGQ6DT37 1551 aa23.4■■□□□ 1.34
MSH5-SAPCD1-206ENST00000491552 TRAK1Q9UPV9 953 aa23.39■■□□□ 1.33
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms