RNA–Protein interactions for RNA: ENST00000489741.1

PRPF40A-210, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 3

Gene PRPF40A, Length 776 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-210ENST00000489741 NUP160Q12769 1436 aa11.33□□□□□ -0.6
PRPF40A-210ENST00000489741 NBPF3Q9H094 633 aa11.32□□□□□ -0.6
PRPF40A-210ENST00000489741 CDHR5Q9HBB8 845 aa11.32□□□□□ -0.6
PRPF40A-210ENST00000489741 GRIN2AQ12879 1464 aa11.32□□□□□ -0.6
PRPF40A-210ENST00000489741 TOP2BQ02880 1626 aa11.31□□□□□ -0.6
PRPF40A-210ENST00000489741 FHAD1B1AJZ9 1412 aa11.3□□□□□ -0.6
PRPF40A-210ENST00000489741 MRPL50Q8N5N7 158 aaKnown RBP11.3□□□□□ -0.6
PRPF40A-210ENST00000489741 CERKQ8TCT0 537 aa11.3□□□□□ -0.6
PRPF40A-210ENST00000489741 RABGEF1Q9UJ41 708 aa11.3□□□□□ -0.6
PRPF40A-210ENST00000489741 PBRM1Q86U86 1689 aa11.3□□□□□ -0.6
PRPF40A-210ENST00000489741 TESPA1A2RU30 521 aaPredicted RBP11.28□□□□□ -0.6
PRPF40A-210ENST00000489741 GOLGA8CPA6NN73 597 aa11.28□□□□□ -0.6
PRPF40A-210ENST00000489741 TRIM6-TRIM34B2RNG4 842 aa11.28□□□□□ -0.6
PRPF40A-210ENST00000489741 KIAA1468Q9P260 1216 aa11.28□□□□□ -0.6
PRPF40A-210ENST00000489741 BIVM-ERCC5R4GMW8 1640 aa11.27□□□□□ -0.6
PRPF40A-210ENST00000489741 BHMG1C9JSJ3 638 aaPredicted RBP11.27□□□□□ -0.61
PRPF40A-210ENST00000489741 SMYD5Q6GMV2 418 aa11.27□□□□□ -0.61
PRPF40A-210ENST00000489741 ERICH3Q5RHP9 1530 aa11.26□□□□□ -0.61
PRPF40A-210ENST00000489741 ADAMTS12P58397 1594 aa11.26□□□□□ -0.61
PRPF40A-210ENST00000489741 ERCC6L2Q5T890 1561 aa11.26□□□□□ -0.61
PRPF40A-210ENST00000489741 CDCA7LQ96GN5 454 aa11.26□□□□□ -0.61
PRPF40A-210ENST00000489741 CEP170Q5SW79 1584 aa11.25□□□□□ -0.61
PRPF40A-210ENST00000489741 NUTM2FA1L443 756 aa11.25□□□□□ -0.61
PRPF40A-210ENST00000489741 ONECUT3O60422 494 aaPredicted RBP11.25□□□□□ -0.61
PRPF40A-210ENST00000489741 PRSS12P56730 875 aa11.25□□□□□ -0.61
PRPF40A-210ENST00000489741 KCTD12Q96CX2 325 aaKnown RBP11.25□□□□□ -0.61
PRPF40A-210ENST00000489741 PACS2Q86VP3 889 aa11.24□□□□□ -0.61
PRPF40A-210ENST00000489741 TSKSQ9UJT2 592 aa11.23□□□□□ -0.61
PRPF40A-210ENST00000489741 SEPT9Q9UHD8 586 aaPredicted RBP11.22□□□□□ -0.61
PRPF40A-210ENST00000489741 IGF1RP08069 1367 aa11.21□□□□□ -0.61
PRPF40A-210ENST00000489741 WNT2BQ93097 391 aa11.21□□□□□ -0.61
PRPF40A-210ENST00000489741 SHROOM2Q13796 1616 aa11.2□□□□□ -0.62
PRPF40A-210ENST00000489741 LAPTM4BQ86VI4 370 aa11.2□□□□□ -0.62
PRPF40A-210ENST00000489741 NPDC1Q9NQX5 325 aaPredicted RBP11.2□□□□□ -0.62
PRPF40A-210ENST00000489741 RBM27Q9P2N5 1060 aaKnown RBP11.2□□□□□ -0.62
PRPF40A-210ENST00000489741 PRG4Q92954 1404 aaPredicted RBP11.19□□□□□ -0.62
PRPF40A-210ENST00000489741 NBPF26B4DH59 902 aa11.19□□□□□ -0.62
PRPF40A-210ENST00000489741 TULP1O00294 542 aaPredicted RBP11.19□□□□□ -0.62
PRPF40A-210ENST00000489741 RBM26Q5T8P6 1007 aaKnown RBP11.19□□□□□ -0.62
PRPF40A-210ENST00000489741 PADI6Q6TGC4 694 aa11.19□□□□□ -0.62
PRPF40A-210ENST00000489741 PTGDRQ13258 359 aa11.18□□□□□ -0.62
PRPF40A-210ENST00000489741 ANKK1Q8NFD2 765 aa11.18□□□□□ -0.62
PRPF40A-210ENST00000489741 FAM198AQ9UFP1 575 aa11.18□□□□□ -0.62
PRPF40A-210ENST00000489741 FAM98CQ17RN3 349 aaKnown RBP11.17□□□□□ -0.62
PRPF40A-210ENST00000489741 HCSTQ9UBK5 93 aa11.17□□□□□ -0.62
PRPF40A-210ENST00000489741 FCHSD2O94868 740 aa11.16□□□□□ -0.62
PRPF40A-210ENST00000489741 SMAPO00193 183 aa11.15□□□□□ -0.62
PRPF40A-210ENST00000489741 ZFRQ96KR1 1074 aaKnown RBP11.15□□□□□ -0.62
PRPF40A-210ENST00000489741 PNMA3Q9UL41 463 aa11.15□□□□□ -0.62
PRPF40A-210ENST00000489741 PTPN5P54829 565 aa11.14□□□□□ -0.63
PRPF40A-210ENST00000489741 THSD4Q6ZMP0 1018 aa11.14□□□□□ -0.63
PRPF40A-210ENST00000489741 TATDN2Q93075 761 aa11.14□□□□□ -0.63
PRPF40A-210ENST00000489741 NUDT18Q6ZVK8 323 aa11.13□□□□□ -0.63
PRPF40A-210ENST00000489741 KIAA0586Q9BVV6 1533 aa11.13□□□□□ -0.63
PRPF40A-210ENST00000489741 KIF27Q86VH2 1401 aa11.12□□□□□ -0.63
PRPF40A-210ENST00000489741 SLC24A1O60721 1099 aa11.12□□□□□ -0.63
PRPF40A-210ENST00000489741 TTC13Q8NBP0 860 aa11.12□□□□□ -0.63
PRPF40A-210ENST00000489741 BCAMP50895 628 aa11.11□□□□□ -0.63
PRPF40A-210ENST00000489741 C3orf80F5H4A9 247 aa11.1□□□□□ -0.63
PRPF40A-210ENST00000489741 GPIHBP1Q8IV16 184 aa11.1□□□□□ -0.63
PRPF40A-210ENST00000489741 LRCH3Q96II8 777 aa11.1□□□□□ -0.63
PRPF40A-210ENST00000489741 RUSC2Q8N2Y8 1516 aa11.09□□□□□ -0.63
PRPF40A-210ENST00000489741 CARMIL1Q5VZK9 1371 aa11.09□□□□□ -0.63
PRPF40A-210ENST00000489741 HIC1Q14526 733 aa11.09□□□□□ -0.63
PRPF40A-210ENST00000489741 SOWAHBA6NEL2 793 aa11.08□□□□□ -0.64
PRPF40A-210ENST00000489741 FAM69CQ0P6D2 419 aa11.08□□□□□ -0.64
PRPF40A-210ENST00000489741 CDKN2AIPQ9NXV6 580 aaPredicted RBP11.08□□□□□ -0.64
PRPF40A-210ENST00000489741 ABCC10Q5T3U5 1492 aa11.07□□□□□ -0.64
PRPF40A-210ENST00000489741 GNPATO15228 680 aa11.05□□□□□ -0.64
PRPF40A-210ENST00000489741 HDGFP51858 240 aaKnown RBP11.05□□□□□ -0.64
PRPF40A-210ENST00000489741 SAMD7Q7Z3H4 446 aa11.05□□□□□ -0.64
PRPF40A-210ENST00000489741 ADGRG1Q9Y653 693 aa11.05□□□□□ -0.64
PRPF40A-210ENST00000489741 MAPKBP1O60336 1514 aa11.04□□□□□ -0.64
PRPF40A-210ENST00000489741 GPR37O15354 613 aa11.04□□□□□ -0.64
PRPF40A-210ENST00000489741 FAM161AQ3B820 660 aa11.04□□□□□ -0.64
PRPF40A-210ENST00000489741 RBM46Q8TBY0 533 aaKnown RBP11.04□□□□□ -0.64
PRPF40A-210ENST00000489741 PTPRGP23470 1445 aa11.03□□□□□ -0.64
PRPF40A-210ENST00000489741 RNF40O75150 1001 aa11.03□□□□□ -0.64
PRPF40A-210ENST00000489741 EYA1Q99502 592 aa11.03□□□□□ -0.64
PRPF40A-210ENST00000489741 HPS5Q9UPZ3 1129 aa11.03□□□□□ -0.64
PRPF40A-210ENST00000489741 CUL7Q14999 1698 aa11.02□□□□□ -0.64
PRPF40A-210ENST00000489741 ADCY10Q96PN6 1610 aa11.02□□□□□ -0.65
PRPF40A-210ENST00000489741 TSR3Q9UJK0 312 aaKnown RBP11.01□□□□□ -0.65
PRPF40A-210ENST00000489741 TNIKQ9UKE5 1360 aa11.01□□□□□ -0.65
PRPF40A-210ENST00000489741 KIF13AQ9H1H9 1805 aa11□□□□□ -0.65
PRPF40A-210ENST00000489741 FECHP22830 423 aa11□□□□□ -0.65
PRPF40A-210ENST00000489741 WBP1LQ9NX94 342 aa11□□□□□ -0.65
PRPF40A-210ENST00000489741 SLC4A3P48751 1232 aa10.99□□□□□ -0.65
PRPF40A-210ENST00000489741 DHX30Q7L2E3 1194 aaKnown RBP eCLIP10.99□□□□□ -0.65
PRPF40A-210ENST00000489741 CARMIL2Q6F5E8 1435 aa10.99□□□□□ -0.65
PRPF40A-210ENST00000489741 OATP04181 439 aa10.98□□□□□ -0.65
PRPF40A-210ENST00000489741 DNAJB2P25686 324 aa10.98□□□□□ -0.65
PRPF40A-210ENST00000489741 PPP4CP60510 307 aa10.98□□□□□ -0.65
PRPF40A-210ENST00000489741 SWT1Q5T5J6 900 aaKnown RBP10.98□□□□□ -0.65
PRPF40A-210ENST00000489741 LMOD2Q6P5Q4 547 aa10.98□□□□□ -0.65
PRPF40A-210ENST00000489741 DIP2BQ9P265 1576 aa10.98□□□□□ -0.65
PRPF40A-210ENST00000489741 NYAP1Q6ZVC0 841 aa10.97□□□□□ -0.65
PRPF40A-210ENST00000489741 PLA2G2EQ9NZK7 142 aa10.97□□□□□ -0.65
PRPF40A-210ENST00000489741 RCCD1A6NED2 376 aa10.96□□□□□ -0.65
PRPF40A-210ENST00000489741 SLF2Q8IX21 1173 aa10.96□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms