RNA–Protein interactions for RNA: ENST00000479161.5

C9orf3-217, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 5

Gene C9orf3, Length 942 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-217ENST00000479161 ABCF1Q8NE71 845 aaKnown RBP eCLIP22.95■■□□□ 1.26
C9orf3-217ENST00000479161 RIMS2Q9UQ26 1411 aa22.91■■□□□ 1.26
C9orf3-217ENST00000479161 IQSEC2Q5JU85 1478 aa22.91■■□□□ 1.26
C9orf3-217ENST00000479161 PLEKHG1Q9ULL1 1385 aa22.89■■□□□ 1.26
C9orf3-217ENST00000479161 CERKQ8TCT0 537 aa22.89■■□□□ 1.25
C9orf3-217ENST00000479161 CHGAP10645 457 aaKnown RBP22.88■■□□□ 1.25
C9orf3-217ENST00000479161 CPS1P31327 1500 aa22.87■■□□□ 1.25
C9orf3-217ENST00000479161 RPGRIP1LQ68CZ1 1315 aa22.86■■□□□ 1.25
C9orf3-217ENST00000479161 CCDC144AA2RUR9 1427 aa22.86■■□□□ 1.25
C9orf3-217ENST00000479161 TRIM26Q12899 539 aaPredicted RBP22.86■■□□□ 1.25
C9orf3-217ENST00000479161 ZNF335Q9H4Z2 1342 aaPredicted RBP22.85■■□□□ 1.25
C9orf3-217ENST00000479161 FOXD1Q16676 465 aa22.83■■□□□ 1.25
C9orf3-217ENST00000479161 TBX22Q9Y458 520 aa22.82■■□□□ 1.24
C9orf3-217ENST00000479161 PPP1R15AO75807 674 aaPredicted RBP22.81■■□□□ 1.24
C9orf3-217ENST00000479161 NEXMIFQ5QGS0 1516 aa22.81■■□□□ 1.24
C9orf3-217ENST00000479161 DIP2AQ14689 1571 aa22.8■■□□□ 1.24
C9orf3-217ENST00000479161 ANKRD30BQ9BXX2 1392 aa22.8■■□□□ 1.24
C9orf3-217ENST00000479161 SPATA31E1Q6ZUB1 1445 aa22.8■■□□□ 1.24
C9orf3-217ENST00000479161 ZNF326Q5BKZ1 582 aaKnown RBP22.79■■□□□ 1.24
C9orf3-217ENST00000479161 PIK3R4Q99570 1358 aa22.78■■□□□ 1.24
C9orf3-217ENST00000479161 VGFO15240 615 aaPredicted RBP22.78■■□□□ 1.24
C9orf3-217ENST00000479161 SETBP1Q9Y6X0 1596 aa22.78■■□□□ 1.24
C9orf3-217ENST00000479161 STRCP1A6NGW2 1772 aa22.76■■□□□ 1.23
C9orf3-217ENST00000479161 ADAMTS13Q76LX8 1427 aa22.76■■□□□ 1.23
C9orf3-217ENST00000479161 PPLO60437 1756 aa22.76■■□□□ 1.23
C9orf3-217ENST00000479161 KCNA6P17658 529 aa22.75■■□□□ 1.23
C9orf3-217ENST00000479161 CHD2O14647 1828 aaKnown RBP22.75■■□□□ 1.23
C9orf3-217ENST00000479161 SLC26A8Q96RN1 970 aa22.74■■□□□ 1.23
C9orf3-217ENST00000479161 NWD1Q149M9 1564 aa22.73■■□□□ 1.23
C9orf3-217ENST00000479161 NRXN3Q9Y4C0 1643 aa22.71■■□□□ 1.23
C9orf3-217ENST00000479161 IFT172Q9UG01 1749 aa22.71■■□□□ 1.23
C9orf3-217ENST00000479161 BCANQ96GW7 911 aa22.71■■□□□ 1.23
C9orf3-217ENST00000479161 NKTRP30414 1462 aaKnown RBP22.71■■□□□ 1.23
C9orf3-217ENST00000479161 LRRC7Q96NW7 1537 aa22.7■■□□□ 1.22
C9orf3-217ENST00000479161 STAC3Q96MF2 364 aa22.69■■□□□ 1.22
C9orf3-217ENST00000479161 NUTM2DQ5VT03 806 aaPredicted RBP22.68■■□□□ 1.22
C9orf3-217ENST00000479161 NCOA3Q9Y6Q9 1424 aa22.65■■□□□ 1.22
C9orf3-217ENST00000479161 RGL3Q3MIN7 710 aa22.63■■□□□ 1.21
C9orf3-217ENST00000479161 SETD1AO15047 1707 aaKnown RBP22.62■■□□□ 1.21
C9orf3-217ENST00000479161 XIRP1Q702N8 1843 aaKnown RBP22.62■■□□□ 1.21
C9orf3-217ENST00000479161 MYOM2P54296 1465 aa22.62■■□□□ 1.21
C9orf3-217ENST00000479161 ALKQ9UM73 1620 aa22.6■■□□□ 1.21
C9orf3-217ENST00000479161 NRXN1Q9ULB1 1477 aa22.6■■□□□ 1.21
C9orf3-217ENST00000479161 PRAG1Q86YV5 1406 aa22.6■■□□□ 1.21
C9orf3-217ENST00000479161 XRN1Q8IZH2 1706 aaKnown RBP22.59■■□□□ 1.21
C9orf3-217ENST00000479161 PIK3C2GO75747 1445 aa22.58■■□□□ 1.21
C9orf3-217ENST00000479161 TOM1O60784 492 aa22.58■■□□□ 1.21
C9orf3-217ENST00000479161 PROSER2Q86WR7 435 aaPredicted RBP22.58■■□□□ 1.21
C9orf3-217ENST00000479161 METP08581 1390 aa22.58■■□□□ 1.21
C9orf3-217ENST00000479161 ADGRF5Q8IZF2 1346 aa22.57■■□□□ 1.2
C9orf3-217ENST00000479161 PTPRUQ92729 1446 aa22.57■■□□□ 1.2
C9orf3-217ENST00000479161 AMOTL2Q9Y2J4 779 aa22.57■■□□□ 1.2
C9orf3-217ENST00000479161 TMEM94Q12767 1356 aa22.57■■□□□ 1.2
C9orf3-217ENST00000479161 DHX57Q6P158 1386 aaKnown RBP22.55■■□□□ 1.2
C9orf3-217ENST00000479161 LAMC1P11047 1609 aa22.53■■□□□ 1.2
C9orf3-217ENST00000479161 UBAP1LF5GYI3 381 aa22.53■■□□□ 1.2
C9orf3-217ENST00000479161 C14orf93Q9H972 538 aaKnown RBP22.52■■□□□ 1.2
C9orf3-217ENST00000479161 SENP3Q9H4L4 574 aaPredicted RBP22.51■■□□□ 1.19
C9orf3-217ENST00000479161 PTCH1Q13635 1447 aa22.5■■□□□ 1.19
C9orf3-217ENST00000479161 MSH6P52701 1360 aa22.48■■□□□ 1.19
C9orf3-217ENST00000479161 TECPR2O15040 1411 aa22.48■■□□□ 1.19
C9orf3-217ENST00000479161 DCAF11Q8TEB1 546 aa22.47■■□□□ 1.19
C9orf3-217ENST00000479161 C19orf44Q9H6X5 657 aa22.47■■□□□ 1.19
C9orf3-217ENST00000479161 ABCC11Q96J66 1382 aa22.47■■□□□ 1.19
C9orf3-217ENST00000479161 DCCP43146 1447 aa22.46■■□□□ 1.19
C9orf3-217ENST00000479161 SIRT1Q96EB6 747 aa22.45■■□□□ 1.18
C9orf3-217ENST00000479161 LRPPRCP42704 1394 aaKnown RBP22.45■■□□□ 1.18
C9orf3-217ENST00000479161 KNDC1Q76NI1 1749 aa22.44■■□□□ 1.18
C9orf3-217ENST00000479161 ASXL1Q8IXJ9 1541 aa22.42■■□□□ 1.18
C9orf3-217ENST00000479161 DISP3Q9P2K9 1392 aa22.42■■□□□ 1.18
C9orf3-217ENST00000479161 ILDR2Q71H61 639 aa22.42■■□□□ 1.18
C9orf3-217ENST00000479161 SIPA1L2Q9P2F8 1722 aaPredicted RBP22.42■■□□□ 1.18
C9orf3-217ENST00000479161 FAM135BQ49AJ0 1406 aa22.41■■□□□ 1.18
C9orf3-217ENST00000479161 KIAA1210Q9ULL0 1709 aa22.41■■□□□ 1.18
C9orf3-217ENST00000479161 CADPS2Q86UW7 1296 aa22.41■■□□□ 1.18
C9orf3-217ENST00000479161 YTHDC2Q9H6S0 1430 aaKnown RBP22.4■■□□□ 1.18
C9orf3-217ENST00000479161 CFAP70Q5T0N1 1121 aa22.4■■□□□ 1.18
C9orf3-217ENST00000479161 ADGRL3Q9HAR2 1447 aa22.4■■□□□ 1.18
C9orf3-217ENST00000479161 ROBO2Q9HCK4 1378 aa22.39■■□□□ 1.18
C9orf3-217ENST00000479161 RBM33Q96EV2 1170 aaKnown RBP22.39■■□□□ 1.17
C9orf3-217ENST00000479161 KDM2AQ9Y2K7 1162 aa22.38■■□□□ 1.17
C9orf3-217ENST00000479161 ADGRB1O14514 1584 aa22.38■■□□□ 1.17
C9orf3-217ENST00000479161 SIN3AQ96ST3 1273 aa22.37■■□□□ 1.17
C9orf3-217ENST00000479161 PCGF6Q9BYE7 350 aa22.37■■□□□ 1.17
C9orf3-217ENST00000479161 CLSPNQ9HAW4 1339 aa22.36■■□□□ 1.17
C9orf3-217ENST00000479161 ATF3P18847 181 aa22.36■■□□□ 1.17
C9orf3-217ENST00000479161 TMEM132EQ6IEE7 984 aa22.36■■□□□ 1.17
C9orf3-217ENST00000479161 C14orf37Q86TY3 774 aa22.36■■□□□ 1.17
C9orf3-217ENST00000479161 SLAIN2Q9P270 581 aa22.36■■□□□ 1.17
C9orf3-217ENST00000479161 DLC1Q96QB1 1528 aa22.36■■□□□ 1.17
C9orf3-217ENST00000479161 L3MBTL2Q969R5 705 aa22.35■■□□□ 1.17
C9orf3-217ENST00000479161 PIP4K2BP78356 416 aa22.34■■□□□ 1.17
C9orf3-217ENST00000479161 NALCNQ8IZF0 1738 aa22.34■■□□□ 1.17
C9orf3-217ENST00000479161 NEUROD1Q13562 356 aa22.3■■□□□ 1.16
C9orf3-217ENST00000479161 STK26Q9P289 416 aa22.29■■□□□ 1.16
C9orf3-217ENST00000479161 ROBO1Q9Y6N7 1651 aa22.29■■□□□ 1.16
C9orf3-217ENST00000479161 SCAF1Q9H7N4 1312 aaKnown RBP22.29■■□□□ 1.16
C9orf3-217ENST00000479161 SOCS7O14512 581 aa22.28■■□□□ 1.16
C9orf3-217ENST00000479161 CDC42BPGQ6DT37 1551 aa22.28■■□□□ 1.16
C9orf3-217ENST00000479161 MST1RQ04912 1400 aa22.27■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 77.5 ms