RNA–Protein interactions for RNA: ENST00000478582.5

CCM2-211, Transcript of CCM2 scaffold protein, humanhuman

TSL 3

Gene CCM2, Length 937 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCM2-211ENST00000478582 TMEM131LA2VDJ0 1609 aa39.51■■■■□ 3.91
CCM2-211ENST00000478582 MYO5BQ9ULV0 1848 aa39.49■■■■□ 3.91
CCM2-211ENST00000478582 CHGAP10645 457 aaKnown RBP39.47■■■■□ 3.91
CCM2-211ENST00000478582 UBAP1LF5GYI3 381 aa39.46■■■■□ 3.91
CCM2-211ENST00000478582 HDGFP51858 240 aaKnown RBP39.46■■■■□ 3.91
CCM2-211ENST00000478582 CLTCL1P53675 1640 aa39.45■■■■□ 3.91
CCM2-211ENST00000478582 STRCP1A6NGW2 1772 aa39.45■■■■□ 3.91
CCM2-211ENST00000478582 ZFYVE9O95405 1425 aa39.43■■■■□ 3.9
CCM2-211ENST00000478582 RIMS2Q9UQ26 1411 aa39.41■■■■□ 3.9
CCM2-211ENST00000478582 PCGF6Q9BYE7 350 aa39.38■■■■□ 3.89
CCM2-211ENST00000478582 ABCF1Q8NE71 845 aaKnown RBP eCLIP39.37■■■■□ 3.89
CCM2-211ENST00000478582 SLC26A8Q96RN1 970 aa39.37■■■■□ 3.89
CCM2-211ENST00000478582 CCDC144AA2RUR9 1427 aa39.37■■■■□ 3.89
CCM2-211ENST00000478582 ANKRD30BQ9BXX2 1392 aa39.36■■■■□ 3.89
CCM2-211ENST00000478582 LRRC7Q96NW7 1537 aa39.36■■■■□ 3.89
CCM2-211ENST00000478582 PPP1R15AO75807 674 aaPredicted RBP39.35■■■■□ 3.89
CCM2-211ENST00000478582 BCANQ96GW7 911 aa39.35■■■■□ 3.89
CCM2-211ENST00000478582 PLEKHG1Q9ULL1 1385 aa39.34■■■■□ 3.89
CCM2-211ENST00000478582 TOM1O60784 492 aa39.32■■■■□ 3.89
CCM2-211ENST00000478582 KIF1BO60333 1816 aa39.3■■■■□ 3.88
CCM2-211ENST00000478582 KCNA6P17658 529 aa39.29■■■■□ 3.88
CCM2-211ENST00000478582 NUTM2DQ5VT03 806 aaPredicted RBP39.25■■■■□ 3.87
CCM2-211ENST00000478582 SENP3Q9H4L4 574 aaPredicted RBP39.25■■■■□ 3.87
CCM2-211ENST00000478582 DHX57Q6P158 1386 aaKnown RBP39.22■■■■□ 3.87
CCM2-211ENST00000478582 ZNF326Q5BKZ1 582 aaKnown RBP39.21■■■■□ 3.87
CCM2-211ENST00000478582 TBX22Q9Y458 520 aa39.21■■■■□ 3.87
CCM2-211ENST00000478582 SPATA31E1Q6ZUB1 1445 aa39.21■■■■□ 3.87
CCM2-211ENST00000478582 RPGRIP1LQ68CZ1 1315 aa39.18■■■■□ 3.86
CCM2-211ENST00000478582 PIP4K2BP78356 416 aa39.18■■■■□ 3.86
CCM2-211ENST00000478582 SCAF1Q9H7N4 1312 aaKnown RBP39.15■■■■□ 3.86
CCM2-211ENST00000478582 XIRP1Q702N8 1843 aaKnown RBP39.14■■■■□ 3.86
CCM2-211ENST00000478582 NEXMIFQ5QGS0 1516 aa39.14■■■■□ 3.86
CCM2-211ENST00000478582 ADAMTS13Q76LX8 1427 aa39.14■■■■□ 3.86
CCM2-211ENST00000478582 NWD1Q149M9 1564 aa39.13■■■■□ 3.85
CCM2-211ENST00000478582 PROSER2Q86WR7 435 aaPredicted RBP39.13■■■■□ 3.85
CCM2-211ENST00000478582 ALKQ9UM73 1620 aa39.13■■■■□ 3.85
CCM2-211ENST00000478582 CHD2O14647 1828 aaKnown RBP39.11■■■■□ 3.85
CCM2-211ENST00000478582 NKTRP30414 1462 aaKnown RBP39.11■■■■□ 3.85
CCM2-211ENST00000478582 TMEM94Q12767 1356 aa39.1■■■■□ 3.85
CCM2-211ENST00000478582 DIP2AQ14689 1571 aa39.09■■■■□ 3.85
CCM2-211ENST00000478582 RGL3Q3MIN7 710 aa39.08■■■■□ 3.85
CCM2-211ENST00000478582 VGFO15240 615 aaPredicted RBP39.05■■■■□ 3.84
CCM2-211ENST00000478582 PIK3R4Q99570 1358 aa39.05■■■■□ 3.84
CCM2-211ENST00000478582 PPLO60437 1756 aa39.01■■■■□ 3.84
CCM2-211ENST00000478582 RBM33Q96EV2 1170 aaKnown RBP39.01■■■■□ 3.84
CCM2-211ENST00000478582 SETBP1Q9Y6X0 1596 aa38.99■■■■□ 3.83
CCM2-211ENST00000478582 HSPA1LP34931 641 aa38.99■■■■□ 3.83
CCM2-211ENST00000478582 NRXN3Q9Y4C0 1643 aa38.97■■■■□ 3.83
CCM2-211ENST00000478582 IFT172Q9UG01 1749 aa38.96■■■■□ 3.83
CCM2-211ENST00000478582 AMOTL2Q9Y2J4 779 aa38.92■■■■□ 3.82
CCM2-211ENST00000478582 SIN3AQ96ST3 1273 aa38.91■■■■□ 3.82
CCM2-211ENST00000478582 PTPRUQ92729 1446 aa38.9■■■■□ 3.82
CCM2-211ENST00000478582 NCOA3Q9Y6Q9 1424 aa38.89■■■■□ 3.82
CCM2-211ENST00000478582 MSH6P52701 1360 aa38.89■■■■□ 3.82
CCM2-211ENST00000478582 ADGRF5Q8IZF2 1346 aa38.89■■■■□ 3.82
CCM2-211ENST00000478582 STAC3Q96MF2 364 aa38.88■■■■□ 3.81
CCM2-211ENST00000478582 MYOM2P54296 1465 aa38.86■■■■□ 3.81
CCM2-211ENST00000478582 METP08581 1390 aa38.84■■■■□ 3.81
CCM2-211ENST00000478582 NRXN1Q9ULB1 1477 aa38.83■■■■□ 3.81
CCM2-211ENST00000478582 FAM135BQ49AJ0 1406 aa38.82■■■■□ 3.81
CCM2-211ENST00000478582 DCAF11Q8TEB1 546 aa38.81■■■■□ 3.8
CCM2-211ENST00000478582 NEUROD1Q13562 356 aa38.8■■■■□ 3.8
CCM2-211ENST00000478582 C14orf37Q86TY3 774 aa38.79■■■■□ 3.8
CCM2-211ENST00000478582 DISP3Q9P2K9 1392 aa38.79■■■■□ 3.8
CCM2-211ENST00000478582 PIK3C2GO75747 1445 aa38.79■■■■□ 3.8
CCM2-211ENST00000478582 XRN1Q8IZH2 1706 aaKnown RBP38.78■■■■□ 3.8
CCM2-211ENST00000478582 CLSPNQ9HAW4 1339 aa38.77■■■■□ 3.8
CCM2-211ENST00000478582 C19orf44Q9H6X5 657 aa38.76■■■■□ 3.8
CCM2-211ENST00000478582 SLAIN2Q9P270 581 aa38.75■■■■□ 3.79
CCM2-211ENST00000478582 KDM2AQ9Y2K7 1162 aa38.74■■■■□ 3.79
CCM2-211ENST00000478582 SETD1AO15047 1707 aaKnown RBP38.72■■■■□ 3.79
CCM2-211ENST00000478582 L3MBTL2Q969R5 705 aa38.7■■■■□ 3.79
CCM2-211ENST00000478582 SIPA1L2Q9P2F8 1722 aaPredicted RBP38.69■■■■□ 3.78
CCM2-211ENST00000478582 CADPS2Q86UW7 1296 aa38.69■■■■□ 3.78
CCM2-211ENST00000478582 C14orf93Q9H972 538 aaKnown RBP38.69■■■■□ 3.78
CCM2-211ENST00000478582 ROBO1Q9Y6N7 1651 aa38.68■■■■□ 3.78
CCM2-211ENST00000478582 ATF3P18847 181 aa38.66■■■■□ 3.78
CCM2-211ENST00000478582 CCER1Q8TC90 406 aaPredicted RBP38.62■■■■□ 3.77
CCM2-211ENST00000478582 LAMC1P11047 1609 aa38.61■■■■□ 3.77
CCM2-211ENST00000478582 CFAP70Q5T0N1 1121 aa38.61■■■■□ 3.77
CCM2-211ENST00000478582 DCCP43146 1447 aa38.59■■■■□ 3.77
CCM2-211ENST00000478582 TONSLQ96HA7 1378 aa38.57■■■■□ 3.77
CCM2-211ENST00000478582 PTCH1Q13635 1447 aa38.56■■■■□ 3.76
CCM2-211ENST00000478582 PRAG1Q86YV5 1406 aa38.56■■■■□ 3.76
CCM2-211ENST00000478582 ASXL1Q8IXJ9 1541 aa38.55■■■■□ 3.76
CCM2-211ENST00000478582 MED1Q15648 1581 aaPredicted RBP38.54■■■■□ 3.76
CCM2-211ENST00000478582 ROBO2Q9HCK4 1378 aa38.53■■■■□ 3.76
CCM2-211ENST00000478582 ADGRL3Q9HAR2 1447 aa38.53■■■■□ 3.76
CCM2-211ENST00000478582 TMEM132EQ6IEE7 984 aa38.52■■■■□ 3.76
CCM2-211ENST00000478582 LRPPRCP42704 1394 aaKnown RBP38.51■■■■□ 3.76
CCM2-211ENST00000478582 ABCC11Q96J66 1382 aa38.48■■■■□ 3.75
CCM2-211ENST00000478582 TIMELESSQ9UNS1 1208 aa38.47■■■■□ 3.75
CCM2-211ENST00000478582 ADGRB1O14514 1584 aa38.47■■■■□ 3.75
CCM2-211ENST00000478582 TECPR2O15040 1411 aa38.46■■■■□ 3.75
CCM2-211ENST00000478582 YTHDC2Q9H6S0 1430 aaKnown RBP38.46■■■■□ 3.75
CCM2-211ENST00000478582 NALCNQ8IZF0 1738 aa38.46■■■■□ 3.75
CCM2-211ENST00000478582 KIAA1210Q9ULL0 1709 aa38.46■■■■□ 3.75
CCM2-211ENST00000478582 ILDR2Q71H61 639 aa38.46■■■■□ 3.75
CCM2-211ENST00000478582 PHLPP1O60346 1717 aa38.46■■■■□ 3.75
CCM2-211ENST00000478582 MST1RQ04912 1400 aa38.44■■■■□ 3.74
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms