RNA–Protein interactions for RNA: ENST00000478531.5

BRCA1-215, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 1,972 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-215ENST00000478531 RIMS2Q9UQ26 1411 aa10.18□□□□□ -0.78
BRCA1-215ENST00000478531 ZNF326Q5BKZ1 582 aaKnown RBP10.17□□□□□ -0.78
BRCA1-215ENST00000478531 MED14O60244 1454 aa10.17□□□□□ -0.78
BRCA1-215ENST00000478531 ZFYVE9O95405 1425 aa10.17□□□□□ -0.78
BRCA1-215ENST00000478531 PPP1R15AO75807 674 aaPredicted RBP10.17□□□□□ -0.78
BRCA1-215ENST00000478531 NUTM2DQ5VT03 806 aaPredicted RBP10.17□□□□□ -0.78
BRCA1-215ENST00000478531 HRCP23327 699 aa10.16□□□□□ -0.78
BRCA1-215ENST00000478531 PPLO60437 1756 aa10.15□□□□□ -0.78
BRCA1-215ENST00000478531 BCANQ96GW7 911 aa10.15□□□□□ -0.78
BRCA1-215ENST00000478531 NEXMIFQ5QGS0 1516 aa10.15□□□□□ -0.79
BRCA1-215ENST00000478531 ZNF335Q9H4Z2 1342 aaPredicted RBP10.14□□□□□ -0.79
BRCA1-215ENST00000478531 STRCP1A6NGW2 1772 aa10.13□□□□□ -0.79
BRCA1-215ENST00000478531 LTBP4Q8N2S1 1624 aa10.13□□□□□ -0.79
BRCA1-215ENST00000478531 IFT172Q9UG01 1749 aa10.13□□□□□ -0.79
BRCA1-215ENST00000478531 ABCF1Q8NE71 845 aaKnown RBP eCLIP10.12□□□□□ -0.79
BRCA1-215ENST00000478531 ANKRD30BQ9BXX2 1392 aa10.12□□□□□ -0.79
BRCA1-215ENST00000478531 PLEKHG1Q9ULL1 1385 aa10.12□□□□□ -0.79
BRCA1-215ENST00000478531 HDGFP51858 240 aaKnown RBP10.12□□□□□ -0.79
BRCA1-215ENST00000478531 RGL3Q3MIN7 710 aa10.12□□□□□ -0.79
BRCA1-215ENST00000478531 SLC26A8Q96RN1 970 aa10.12□□□□□ -0.79
BRCA1-215ENST00000478531 NRXN3Q9Y4C0 1643 aa10.11□□□□□ -0.79
BRCA1-215ENST00000478531 PCGF6Q9BYE7 350 aa10.11□□□□□ -0.79
BRCA1-215ENST00000478531 SPATA31E1Q6ZUB1 1445 aa10.1□□□□□ -0.79
BRCA1-215ENST00000478531 DIP2AQ14689 1571 aa10.1□□□□□ -0.79
BRCA1-215ENST00000478531 SETBP1Q9Y6X0 1596 aa10.09□□□□□ -0.79
BRCA1-215ENST00000478531 PIAS4Q8N2W9 510 aaPredicted RBP10.09□□□□□ -0.79
BRCA1-215ENST00000478531 CHD2O14647 1828 aaKnown RBP10.08□□□□□ -0.8
BRCA1-215ENST00000478531 CPS1P31327 1500 aa10.08□□□□□ -0.8
BRCA1-215ENST00000478531 ADAMTS13Q76LX8 1427 aa10.08□□□□□ -0.8
BRCA1-215ENST00000478531 CERKQ8TCT0 537 aa10.08□□□□□ -0.8
BRCA1-215ENST00000478531 DHX57Q6P158 1386 aaKnown RBP10.07□□□□□ -0.8
BRCA1-215ENST00000478531 RPGRIP1LQ68CZ1 1315 aa10.07□□□□□ -0.8
BRCA1-215ENST00000478531 SETD1AO15047 1707 aaKnown RBP10.07□□□□□ -0.8
BRCA1-215ENST00000478531 NWD1Q149M9 1564 aa10.07□□□□□ -0.8
BRCA1-215ENST00000478531 XIRP1Q702N8 1843 aaKnown RBP10.06□□□□□ -0.8
BRCA1-215ENST00000478531 VGFO15240 615 aaPredicted RBP10.06□□□□□ -0.8
BRCA1-215ENST00000478531 ADGRF5Q8IZF2 1346 aa10.04□□□□□ -0.8
BRCA1-215ENST00000478531 ALKQ9UM73 1620 aa10.04□□□□□ -0.8
BRCA1-215ENST00000478531 LRRC7Q96NW7 1537 aa10.04□□□□□ -0.8
BRCA1-215ENST00000478531 XRN1Q8IZH2 1706 aaKnown RBP10.03□□□□□ -0.8
BRCA1-215ENST00000478531 NKTRP30414 1462 aaKnown RBP10.03□□□□□ -0.8
BRCA1-215ENST00000478531 MYOM2P54296 1465 aa10.03□□□□□ -0.8
BRCA1-215ENST00000478531 TBX22Q9Y458 520 aa10.03□□□□□ -0.8
BRCA1-215ENST00000478531 IQSEC2Q5JU85 1478 aa10.03□□□□□ -0.8
BRCA1-215ENST00000478531 PIK3C2GO75747 1445 aa10.03□□□□□ -0.8
BRCA1-215ENST00000478531 METP08581 1390 aa10.03□□□□□ -0.8
BRCA1-215ENST00000478531 KCNA6P17658 529 aa10.03□□□□□ -0.8
BRCA1-215ENST00000478531 PTPRUQ92729 1446 aa10.02□□□□□ -0.81
BRCA1-215ENST00000478531 NEUROD1Q13562 356 aa10.02□□□□□ -0.81
BRCA1-215ENST00000478531 DCAF11Q8TEB1 546 aa10.02□□□□□ -0.81
BRCA1-215ENST00000478531 RBM33Q96EV2 1170 aaKnown RBP10.02□□□□□ -0.81
BRCA1-215ENST00000478531 KDM2AQ9Y2K7 1162 aa10.02□□□□□ -0.81
BRCA1-215ENST00000478531 LAMC1P11047 1609 aa10.02□□□□□ -0.81
BRCA1-215ENST00000478531 SIN3AQ96ST3 1273 aa10.01□□□□□ -0.81
BRCA1-215ENST00000478531 PIK3R4Q99570 1358 aa10.01□□□□□ -0.81
BRCA1-215ENST00000478531 PROSER2Q86WR7 435 aaPredicted RBP10.01□□□□□ -0.81
BRCA1-215ENST00000478531 NRXN1Q9ULB1 1477 aa10.01□□□□□ -0.81
BRCA1-215ENST00000478531 TMEM94Q12767 1356 aa10□□□□□ -0.81
BRCA1-215ENST00000478531 AMOTL2Q9Y2J4 779 aa10□□□□□ -0.81
BRCA1-215ENST00000478531 ASXL1Q8IXJ9 1541 aa10□□□□□ -0.81
BRCA1-215ENST00000478531 UBAP1LF5GYI3 381 aa9.99□□□□□ -0.81
BRCA1-215ENST00000478531 FBXO41Q8TF61 875 aa9.99□□□□□ -0.81
BRCA1-215ENST00000478531 SLC24A1O60721 1099 aa9.98□□□□□ -0.81
BRCA1-215ENST00000478531 C14orf37Q86TY3 774 aa9.98□□□□□ -0.81
BRCA1-215ENST00000478531 KNDC1Q76NI1 1749 aa9.98□□□□□ -0.81
BRCA1-215ENST00000478531 NALCNQ8IZF0 1738 aa9.98□□□□□ -0.81
BRCA1-215ENST00000478531 SCAF1Q9H7N4 1312 aaKnown RBP9.98□□□□□ -0.81
BRCA1-215ENST00000478531 ILDR1Q86SU0 546 aaPredicted RBP9.97□□□□□ -0.81
BRCA1-215ENST00000478531 SIPA1L2Q9P2F8 1722 aaPredicted RBP9.97□□□□□ -0.81
BRCA1-215ENST00000478531 CFAP70Q5T0N1 1121 aa9.97□□□□□ -0.81
BRCA1-215ENST00000478531 TMEM132EQ6IEE7 984 aa9.97□□□□□ -0.81
BRCA1-215ENST00000478531 STK26Q9P289 416 aa9.96□□□□□ -0.81
BRCA1-215ENST00000478531 PTCH1Q13635 1447 aa9.96□□□□□ -0.82
BRCA1-215ENST00000478531 MSH6P52701 1360 aa9.96□□□□□ -0.82
BRCA1-215ENST00000478531 PIP4K2BP78356 416 aa9.95□□□□□ -0.82
BRCA1-215ENST00000478531 TONSLQ96HA7 1378 aa9.95□□□□□ -0.82
BRCA1-215ENST00000478531 ROBO2Q9HCK4 1378 aa9.95□□□□□ -0.82
BRCA1-215ENST00000478531 KIAA1210Q9ULL0 1709 aa9.95□□□□□ -0.82
BRCA1-215ENST00000478531 L3MBTL2Q969R5 705 aa9.95□□□□□ -0.82
BRCA1-215ENST00000478531 PRAG1Q86YV5 1406 aa9.95□□□□□ -0.82
BRCA1-215ENST00000478531 YTHDC2Q9H6S0 1430 aaKnown RBP9.95□□□□□ -0.82
BRCA1-215ENST00000478531 TOM1O60784 492 aa9.94□□□□□ -0.82
BRCA1-215ENST00000478531 C14orf93Q9H972 538 aaKnown RBP9.94□□□□□ -0.82
BRCA1-215ENST00000478531 ADGRB1O14514 1584 aa9.94□□□□□ -0.82
BRCA1-215ENST00000478531 LRPPRCP42704 1394 aaKnown RBP9.94□□□□□ -0.82
BRCA1-215ENST00000478531 STAC3Q96MF2 364 aa9.94□□□□□ -0.82
BRCA1-215ENST00000478531 CCER1Q8TC90 406 aaPredicted RBP9.93□□□□□ -0.82
BRCA1-215ENST00000478531 TRPM1Q7Z4N2 1603 aa9.93□□□□□ -0.82
BRCA1-215ENST00000478531 ARHGEF28Q8N1W1 1705 aaKnown RBP9.92□□□□□ -0.82
BRCA1-215ENST00000478531 TECPR2O15040 1411 aa9.92□□□□□ -0.82
BRCA1-215ENST00000478531 ADGRL3Q9HAR2 1447 aa9.92□□□□□ -0.82
BRCA1-215ENST00000478531 ROBO1Q9Y6N7 1651 aa9.92□□□□□ -0.82
BRCA1-215ENST00000478531 NCOA3Q9Y6Q9 1424 aa9.92□□□□□ -0.82
BRCA1-215ENST00000478531 ABCC11Q96J66 1382 aa9.91□□□□□ -0.82
BRCA1-215ENST00000478531 PLEKHH1Q9ULM0 1364 aa9.91□□□□□ -0.82
BRCA1-215ENST00000478531 ATF3P18847 181 aa9.9□□□□□ -0.82
BRCA1-215ENST00000478531 SAFB2Q14151 953 aaKnown RBP eCLIP9.9□□□□□ -0.821e-6■□□□□ 10.7
BRCA1-215ENST00000478531 WAPLQ7Z5K2 1190 aa9.9□□□□□ -0.82
BRCA1-215ENST00000478531 C19orf44Q9H6X5 657 aa9.9□□□□□ -0.83
BRCA1-215ENST00000478531 TRAK1Q9UPV9 953 aa9.9□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 109.6 ms