RNA–Protein interactions for RNA: ENST00000476739.5

HDAC3-208, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 422 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-208ENST00000476739 HRCP23327 699 aa14.38□□□□□ -0.11
HDAC3-208ENST00000476739 ACIN1Q9UKV3 1341 aaKnown RBP14.37□□□□□ -0.11
HDAC3-208ENST00000476739 TRIM26Q12899 539 aaPredicted RBP14.36□□□□□ -0.11
HDAC3-208ENST00000476739 KIF1BO60333 1816 aa14.36□□□□□ -0.11
HDAC3-208ENST00000476739 ZNF326Q5BKZ1 582 aaKnown RBP14.34□□□□□ -0.11
HDAC3-208ENST00000476739 STRCP1A6NGW2 1772 aa14.33□□□□□ -0.12
HDAC3-208ENST00000476739 PPP1R15AO75807 674 aaPredicted RBP14.33□□□□□ -0.12
HDAC3-208ENST00000476739 CERKQ8TCT0 537 aa14.33□□□□□ -0.12
HDAC3-208ENST00000476739 SLC26A8Q96RN1 970 aa14.33□□□□□ -0.12
HDAC3-208ENST00000476739 CCDC144AA2RUR9 1427 aa14.32□□□□□ -0.12
HDAC3-208ENST00000476739 NEXMIFQ5QGS0 1516 aa14.32□□□□□ -0.12
HDAC3-208ENST00000476739 PLEKHG1Q9ULL1 1385 aa14.32□□□□□ -0.12
HDAC3-208ENST00000476739 ABCF1Q8NE71 845 aaKnown RBP eCLIP14.31□□□□□ -0.12
HDAC3-208ENST00000476739 ANKRD30BQ9BXX2 1392 aa14.31□□□□□ -0.12
HDAC3-208ENST00000476739 HDGFP51858 240 aaKnown RBP14.3□□□□□ -0.12
HDAC3-208ENST00000476739 BCANQ96GW7 911 aa14.3□□□□□ -0.12
HDAC3-208ENST00000476739 SPATA31E1Q6ZUB1 1445 aa14.3□□□□□ -0.12
HDAC3-208ENST00000476739 ADAMTS13Q76LX8 1427 aa14.29□□□□□ -0.12
HDAC3-208ENST00000476739 RGL3Q3MIN7 710 aa14.28□□□□□ -0.12
HDAC3-208ENST00000476739 NRXN3Q9Y4C0 1643 aa14.28□□□□□ -0.12
HDAC3-208ENST00000476739 PPLO60437 1756 aa14.27□□□□□ -0.12
HDAC3-208ENST00000476739 CPS1P31327 1500 aa14.25□□□□□ -0.13
HDAC3-208ENST00000476739 RPGRIP1LQ68CZ1 1315 aa14.24□□□□□ -0.13
HDAC3-208ENST00000476739 ILDR1Q86SU0 546 aaPredicted RBP14.24□□□□□ -0.13
HDAC3-208ENST00000476739 TBX22Q9Y458 520 aa14.24□□□□□ -0.13
HDAC3-208ENST00000476739 SETBP1Q9Y6X0 1596 aa14.24□□□□□ -0.13
HDAC3-208ENST00000476739 LRRC7Q96NW7 1537 aa14.24□□□□□ -0.13
HDAC3-208ENST00000476739 IFT172Q9UG01 1749 aa14.24□□□□□ -0.13
HDAC3-208ENST00000476739 KCNA6P17658 529 aa14.23□□□□□ -0.13
HDAC3-208ENST00000476739 CHD2O14647 1828 aaKnown RBP14.22□□□□□ -0.13
HDAC3-208ENST00000476739 ADGRF5Q8IZF2 1346 aa14.22□□□□□ -0.13
HDAC3-208ENST00000476739 VGFO15240 615 aaPredicted RBP14.22□□□□□ -0.13
HDAC3-208ENST00000476739 RBM33Q96EV2 1170 aaKnown RBP14.22□□□□□ -0.13
HDAC3-208ENST00000476739 PTPRUQ92729 1446 aa14.22□□□□□ -0.13
HDAC3-208ENST00000476739 DIP2AQ14689 1571 aa14.22□□□□□ -0.13
HDAC3-208ENST00000476739 NWD1Q149M9 1564 aa14.22□□□□□ -0.13
HDAC3-208ENST00000476739 METP08581 1390 aa14.22□□□□□ -0.13
HDAC3-208ENST00000476739 DHX57Q6P158 1386 aaKnown RBP14.22□□□□□ -0.13
HDAC3-208ENST00000476739 IQSEC2Q5JU85 1478 aa14.21□□□□□ -0.13
HDAC3-208ENST00000476739 XIRP1Q702N8 1843 aaKnown RBP14.21□□□□□ -0.13
HDAC3-208ENST00000476739 FBXO41Q8TF61 875 aa14.21□□□□□ -0.13
HDAC3-208ENST00000476739 SETD1AO15047 1707 aaKnown RBP14.2□□□□□ -0.14
HDAC3-208ENST00000476739 PCGF6Q9BYE7 350 aa14.19□□□□□ -0.14
HDAC3-208ENST00000476739 ALKQ9UM73 1620 aa14.19□□□□□ -0.14
HDAC3-208ENST00000476739 PROSER2Q86WR7 435 aaPredicted RBP14.17□□□□□ -0.14
HDAC3-208ENST00000476739 SIN3AQ96ST3 1273 aa14.17□□□□□ -0.14
HDAC3-208ENST00000476739 AMOTL2Q9Y2J4 779 aa14.17□□□□□ -0.14
HDAC3-208ENST00000476739 TMEM94Q12767 1356 aa14.17□□□□□ -0.14
HDAC3-208ENST00000476739 PIK3R4Q99570 1358 aa14.17□□□□□ -0.14
HDAC3-208ENST00000476739 NKTRP30414 1462 aaKnown RBP14.17□□□□□ -0.14
HDAC3-208ENST00000476739 PIK3C2GO75747 1445 aa14.15□□□□□ -0.14
HDAC3-208ENST00000476739 XRN1Q8IZH2 1706 aaKnown RBP14.15□□□□□ -0.14
HDAC3-208ENST00000476739 MYOM2P54296 1465 aa14.15□□□□□ -0.14
HDAC3-208ENST00000476739 NRXN1Q9ULB1 1477 aa14.15□□□□□ -0.14
HDAC3-208ENST00000476739 UBAP1LF5GYI3 381 aa14.15□□□□□ -0.14
HDAC3-208ENST00000476739 DCAF11Q8TEB1 546 aa14.14□□□□□ -0.15
HDAC3-208ENST00000476739 KDM2AQ9Y2K7 1162 aa14.14□□□□□ -0.15
HDAC3-208ENST00000476739 ASXL1Q8IXJ9 1541 aa14.13□□□□□ -0.15
HDAC3-208ENST00000476739 CFAP70Q5T0N1 1121 aa14.12□□□□□ -0.15
HDAC3-208ENST00000476739 TMEM132EQ6IEE7 984 aa14.12□□□□□ -0.15
HDAC3-208ENST00000476739 NEUROD1Q13562 356 aa14.11□□□□□ -0.15
HDAC3-208ENST00000476739 C14orf93Q9H972 538 aaKnown RBP14.1□□□□□ -0.15
HDAC3-208ENST00000476739 TOM1O60784 492 aa14.09□□□□□ -0.15
HDAC3-208ENST00000476739 PIP4K2BP78356 416 aa14.09□□□□□ -0.15
HDAC3-208ENST00000476739 ROBO2Q9HCK4 1378 aa14.09□□□□□ -0.15
HDAC3-208ENST00000476739 L3MBTL2Q969R5 705 aa14.07□□□□□ -0.16
HDAC3-208ENST00000476739 STK26Q9P289 416 aa14.07□□□□□ -0.16
HDAC3-208ENST00000476739 SCAF1Q9H7N4 1312 aaKnown RBP14.07□□□□□ -0.16
HDAC3-208ENST00000476739 NCOA3Q9Y6Q9 1424 aa14.07□□□□□ -0.16
HDAC3-208ENST00000476739 C14orf37Q86TY3 774 aa14.06□□□□□ -0.16
HDAC3-208ENST00000476739 SIPA1L2Q9P2F8 1722 aaPredicted RBP14.06□□□□□ -0.16
HDAC3-208ENST00000476739 LRPPRCP42704 1394 aaKnown RBP14.06□□□□□ -0.16
HDAC3-208ENST00000476739 MSH6P52701 1360 aa14.06□□□□□ -0.16
HDAC3-208ENST00000476739 PTCH1Q13635 1447 aa14.06□□□□□ -0.16
HDAC3-208ENST00000476739 PRAG1Q86YV5 1406 aa14.06□□□□□ -0.16
HDAC3-208ENST00000476739 YTHDC2Q9H6S0 1430 aaKnown RBP14.06□□□□□ -0.16
HDAC3-208ENST00000476739 ADGRB1O14514 1584 aa14.05□□□□□ -0.16
HDAC3-208ENST00000476739 LAMC1P11047 1609 aa14.05□□□□□ -0.16
HDAC3-208ENST00000476739 STAC3Q96MF2 364 aa14.04□□□□□ -0.16
HDAC3-208ENST00000476739 C19orf44Q9H6X5 657 aa14.04□□□□□ -0.16
HDAC3-208ENST00000476739 PLEKHH1Q9ULM0 1364 aa14.04□□□□□ -0.16
HDAC3-208ENST00000476739 TECPR2O15040 1411 aa14.04□□□□□ -0.16
HDAC3-208ENST00000476739 NALCNQ8IZF0 1738 aa14.04□□□□□ -0.16
HDAC3-208ENST00000476739 WAPLQ7Z5K2 1190 aa14.03□□□□□ -0.16
HDAC3-208ENST00000476739 ABCC11Q96J66 1382 aa14.03□□□□□ -0.16
HDAC3-208ENST00000476739 KNDC1Q76NI1 1749 aa14.03□□□□□ -0.16
HDAC3-208ENST00000476739 ADGRL3Q9HAR2 1447 aa14.02□□□□□ -0.16
HDAC3-208ENST00000476739 NBPF1Q3BBV0 1214 aa14.01□□□□□ -0.17
HDAC3-208ENST00000476739 SLAIN2Q9P270 581 aa14.01□□□□□ -0.17
HDAC3-208ENST00000476739 HSPA1LP34931 641 aa14□□□□□ -0.17
HDAC3-208ENST00000476739 ROBO1Q9Y6N7 1651 aa13.99□□□□□ -0.17
HDAC3-208ENST00000476739 ATF3P18847 181 aa13.99□□□□□ -0.17
HDAC3-208ENST00000476739 CADPS2Q86UW7 1296 aa13.99□□□□□ -0.17
HDAC3-208ENST00000476739 TRAK1Q9UPV9 953 aa13.99□□□□□ -0.17
HDAC3-208ENST00000476739 FAM135BQ49AJ0 1406 aa13.98□□□□□ -0.17
HDAC3-208ENST00000476739 KIAA1210Q9ULL0 1709 aa13.98□□□□□ -0.17
HDAC3-208ENST00000476739 DCCP43146 1447 aa13.98□□□□□ -0.17
HDAC3-208ENST00000476739 MST1RQ04912 1400 aa13.98□□□□□ -0.17
HDAC3-208ENST00000476739 DLC1Q96QB1 1528 aa13.97□□□□□ -0.17
HDAC3-208ENST00000476739 SAFB2Q14151 953 aaKnown RBP eCLIP13.97□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms