RNA–Protein interactions for RNA: ENST00000474929.1

USP54-211, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 590 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-211ENST00000474929 PIK3C2BO00750 1634 aa13.26□□□□□ -0.29
USP54-211ENST00000474929 SETD5Q9C0A6 1442 aa13.26□□□□□ -0.29
USP54-211ENST00000474929 STAG3Q9UJ98 1225 aa13.26□□□□□ -0.29
USP54-211ENST00000474929 MTUS2Q5JR59 1369 aa13.24□□□□□ -0.29
USP54-211ENST00000474929 C8orf37Q96NL8 207 aa13.24□□□□□ -0.29
USP54-211ENST00000474929 CEP152O94986 1710 aa13.24□□□□□ -0.29
USP54-211ENST00000474929 IFFO2Q5TF58 517 aa13.23□□□□□ -0.29
USP54-211ENST00000474929 DCCP43146 1447 aa13.22□□□□□ -0.29
USP54-211ENST00000474929 ATF3P18847 181 aa13.22□□□□□ -0.29
USP54-211ENST00000474929 C14orf37Q86TY3 774 aa13.22□□□□□ -0.29
USP54-211ENST00000474929 ARHGEF5Q12774 1597 aa13.22□□□□□ -0.29
USP54-211ENST00000474929 EHBP1L1Q8N3D4 1523 aa13.22□□□□□ -0.29
USP54-211ENST00000474929 CHD2O14647 1828 aaKnown RBP13.22□□□□□ -0.29
USP54-211ENST00000474929 BLMP54132 1417 aaPredicted RBP13.22□□□□□ -0.29
USP54-211ENST00000474929 EP400Q96L91 3159 aa13.21□□□□□ -0.29
USP54-211ENST00000474929 SLC26A8Q96RN1 970 aa13.21□□□□□ -0.29
USP54-211ENST00000474929 TRPC5Q9UL62 973 aaPredicted RBP13.21□□□□□ -0.29
USP54-211ENST00000474929 SIPA1L2Q9P2F8 1722 aaPredicted RBP13.2□□□□□ -0.3
USP54-211ENST00000474929 LRRC59Q96AG4 307 aaKnown RBP13.2□□□□□ -0.3
USP54-211ENST00000474929 ADGRB3O60242 1522 aa13.19□□□□□ -0.3
USP54-211ENST00000474929 ASXL1Q8IXJ9 1541 aa13.19□□□□□ -0.3
USP54-211ENST00000474929 TSPY4P0CV99 314 aa13.19□□□□□ -0.3
USP54-211ENST00000474929 TSPY10P0CW01 314 aa13.19□□□□□ -0.3
USP54-211ENST00000474929 POTEDQ86YR6 584 aa13.19□□□□□ -0.3
USP54-211ENST00000474929 C19orf44Q9H6X5 657 aa13.19□□□□□ -0.3
USP54-211ENST00000474929 ZNF644Q9H582 1327 aaPredicted RBP13.18□□□□□ -0.3
USP54-211ENST00000474929 MAST1Q9Y2H9 1570 aa13.18□□□□□ -0.3
USP54-211ENST00000474929 CFAP65Q6ZU64 1925 aaKnown RBP13.17□□□□□ -0.3
USP54-211ENST00000474929 CEP162Q5TB80 1403 aa13.17□□□□□ -0.3
USP54-211ENST00000474929 BRINP3Q76B58 766 aa13.17□□□□□ -0.3
USP54-211ENST00000474929 BCANQ96GW7 911 aa13.17□□□□□ -0.3
USP54-211ENST00000474929 UNC13BO14795 1591 aa13.16□□□□□ -0.3
USP54-211ENST00000474929 YY1P25490 414 aa13.16□□□□□ -0.3
USP54-211ENST00000474929 SF3B2Q13435 895 aaKnown RBP13.16□□□□□ -0.3
USP54-211ENST00000474929 PNPLA6Q8IY17 1366 aa13.16□□□□□ -0.3
USP54-211ENST00000474929 PLEKHG1Q9ULL1 1385 aa13.16□□□□□ -0.3
USP54-211ENST00000474929 PTCH1Q13635 1447 aa13.15□□□□□ -0.3
USP54-211ENST00000474929 USP21Q9UK80 565 aa13.15□□□□□ -0.3
USP54-211ENST00000474929 PIK3R4Q99570 1358 aa13.15□□□□□ -0.3
USP54-211ENST00000474929 ATRNO75882 1429 aa13.14□□□□□ -0.31
USP54-211ENST00000474929 SPHKAPQ2M3C7 1700 aa13.14□□□□□ -0.31
USP54-211ENST00000474929 HDGFP51858 240 aaKnown RBP13.14□□□□□ -0.31
USP54-211ENST00000474929 DUOX2Q9NRD8 1548 aa13.13□□□□□ -0.31
USP54-211ENST00000474929 KANK1Q14678 1352 aa13.1□□□□□ -0.31
USP54-211ENST00000474929 PPP1R15AO75807 674 aaPredicted RBP13.09□□□□□ -0.31
USP54-211ENST00000474929 FNBP4Q8N3X1 1017 aaPredicted RBP13.09□□□□□ -0.31
USP54-211ENST00000474929 ERBINQ96RT1 1412 aa13.09□□□□□ -0.31
USP54-211ENST00000474929 TBX22Q9Y458 520 aa13.09□□□□□ -0.31
USP54-211ENST00000474929 RPRD2Q5VT52 1461 aaKnown RBP13.09□□□□□ -0.31
USP54-211ENST00000474929 BCL9LQ86UU0 1499 aa13.09□□□□□ -0.31
USP54-211ENST00000474929 HRCP23327 699 aa13.08□□□□□ -0.32
USP54-211ENST00000474929 LMTK2Q8IWU2 1503 aa13.08□□□□□ -0.32
USP54-211ENST00000474929 ZFYVE9O95405 1425 aa13.07□□□□□ -0.32
USP54-211ENST00000474929 MST1RQ04912 1400 aa13.07□□□□□ -0.32
USP54-211ENST00000474929 DCAF8L1A6NGE4 600 aa13.07□□□□□ -0.32
USP54-211ENST00000474929 ADAMTS2O95450 1211 aa13.07□□□□□ -0.32
USP54-211ENST00000474929 SLC52A1Q9NWF4 448 aa13.07□□□□□ -0.32
USP54-211ENST00000474929 TRPM2O94759 1503 aa13.07□□□□□ -0.32
USP54-211ENST00000474929 IDI1Q13907 227 aa13.06□□□□□ -0.32
USP54-211ENST00000474929 TNKS1BP1Q9C0C2 1729 aaKnown RBP13.05□□□□□ -0.32
USP54-211ENST00000474929 LAMC1P11047 1609 aa13.05□□□□□ -0.32
USP54-211ENST00000474929 NOS1P29475 1434 aa13.05□□□□□ -0.32
USP54-211ENST00000474929 COL22A1Q8NFW1 1626 aaPredicted RBP13.04□□□□□ -0.32
USP54-211ENST00000474929 ABCF1Q8NE71 845 aaKnown RBP eCLIP13.04□□□□□ -0.32
USP54-211ENST00000474929 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.04□□□□□ -0.32
USP54-211ENST00000474929 BAG6P46379 1132 aa13.03□□□□□ -0.32
USP54-211ENST00000474929 RIMS2Q9UQ26 1411 aa13.03□□□□□ -0.32
USP54-211ENST00000474929 DEFB132Q7Z7B7 95 aa13.02□□□□□ -0.33
USP54-211ENST00000474929 GJD4Q96KN9 370 aaPredicted RBP13.01□□□□□ -0.33
USP54-211ENST00000474929 ADAMTS13Q76LX8 1427 aa13□□□□□ -0.33
USP54-211ENST00000474929 EHMT2Q96KQ7 1210 aa13□□□□□ -0.33
USP54-211ENST00000474929 MARF1Q9Y4F3 1742 aaKnown RBP12.99□□□□□ -0.33
USP54-211ENST00000474929 GCC2Q8IWJ2 1684 aa12.99□□□□□ -0.33
USP54-211ENST00000474929 SENP3-EIF4A1A0A087X0R7 540 aa12.99□□□□□ -0.33
USP54-211ENST00000474929 PSDA5PKW4 1024 aaPredicted RBP12.99□□□□□ -0.33
USP54-211ENST00000474929 ADGRL3Q9HAR2 1447 aa12.98□□□□□ -0.33
USP54-211ENST00000474929 KIF15Q9NS87 1388 aa12.98□□□□□ -0.33
USP54-211ENST00000474929 XRN1Q8IZH2 1706 aaKnown RBP12.98□□□□□ -0.33
USP54-211ENST00000474929 MYOM2P54296 1465 aa12.97□□□□□ -0.33
USP54-211ENST00000474929 RALGAPBQ86X10 1494 aa12.97□□□□□ -0.33
USP54-211ENST00000474929 TMEM131LA2VDJ0 1609 aa12.95□□□□□ -0.34
USP54-211ENST00000474929 PTPN23Q9H3S7 1636 aa12.95□□□□□ -0.34
USP54-211ENST00000474929 GLI3P10071 1580 aa12.95□□□□□ -0.34
USP54-211ENST00000474929 SOS2Q07890 1332 aaPredicted RBP12.95□□□□□ -0.34
USP54-211ENST00000474929 AMOTL2Q9Y2J4 779 aa12.95□□□□□ -0.34
USP54-211ENST00000474929 RGPD1P0DJD0 1748 aa12.94□□□□□ -0.34
USP54-211ENST00000474929 MYO5BQ9ULV0 1848 aa12.94□□□□□ -0.34
USP54-211ENST00000474929 MYOM3Q5VTT5 1437 aa12.94□□□□□ -0.34
USP54-211ENST00000474929 NINLQ9Y2I6 1382 aa12.94□□□□□ -0.34
USP54-211ENST00000474929 BRWD3Q6RI45 1802 aa12.93□□□□□ -0.34
USP54-211ENST00000474929 CROCC2H7BZ55 1655 aa12.93□□□□□ -0.34
USP54-211ENST00000474929 C1orf167Q5SNV9 1468 aa12.92□□□□□ -0.34
USP54-211ENST00000474929 DISP2A7MBM2 1401 aa12.92□□□□□ -0.34
USP54-211ENST00000474929 ADGRB2O60241 1585 aa12.92□□□□□ -0.34
USP54-211ENST00000474929 UNC5CLQ8IV45 518 aa12.91□□□□□ -0.34
USP54-211ENST00000474929 NALCNQ8IZF0 1738 aa12.91□□□□□ -0.34
USP54-211ENST00000474929 PTPRUQ92729 1446 aa12.9□□□□□ -0.34
USP54-211ENST00000474929 SLIT2O94813 1529 aa12.9□□□□□ -0.34
USP54-211ENST00000474929 R3HDM1Q15032 1099 aaKnown RBP12.9□□□□□ -0.34
USP54-211ENST00000474929 DDX17Q92841 729 aaKnown RBP12.9□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 135.2 ms