RNA–Protein interactions for RNA: ENST00000469550.6

HDAC3-205, Transcript of histone deacetylase 3, humanhuman

TSL 1 (best)

Gene HDAC3, Length 1,952 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-205ENST00000469550 HSPA1LP34931 641 aa13.45□□□□□ -0.26
HDAC3-205ENST00000469550 NOS1P29475 1434 aa13.45□□□□□ -0.26
HDAC3-205ENST00000469550 PPP1R15AO75807 674 aaPredicted RBP13.45□□□□□ -0.26
HDAC3-205ENST00000469550 FKBP8Q14318 412 aa13.45□□□□□ -0.26
HDAC3-205ENST00000469550 TMEM2Q9UHN6 1383 aa13.44□□□□□ -0.26
HDAC3-205ENST00000469550 LTKP29376 864 aa13.43□□□□□ -0.26
HDAC3-205ENST00000469550 ADGRB3O60242 1522 aa13.43□□□□□ -0.26
HDAC3-205ENST00000469550 RPRD2Q5VT52 1461 aaKnown RBP13.43□□□□□ -0.26
HDAC3-205ENST00000469550 NEFLP07196 543 aa13.42□□□□□ -0.26
HDAC3-205ENST00000469550 PIP4K2BP78356 416 aa13.42□□□□□ -0.26
HDAC3-205ENST00000469550 TET3O43151 1660 aa13.42□□□□□ -0.26
HDAC3-205ENST00000469550 TXNDC2Q86VQ3 553 aa13.41□□□□□ -0.26
HDAC3-205ENST00000469550 BCL11AQ9H165 835 aa13.41□□□□□ -0.26
HDAC3-205ENST00000469550 EID1Q9Y6B2 187 aa13.41□□□□□ -0.26
HDAC3-205ENST00000469550 UNC13BO14795 1591 aa13.4□□□□□ -0.26
HDAC3-205ENST00000469550 DDX10Q13206 875 aaKnown RBP13.4□□□□□ -0.26
HDAC3-205ENST00000469550 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.4□□□□□ -0.26
HDAC3-205ENST00000469550 RBM19Q9Y4C8 960 aaKnown RBP13.4□□□□□ -0.26
HDAC3-205ENST00000469550 GCC2Q8IWJ2 1684 aa13.4□□□□□ -0.26
HDAC3-205ENST00000469550 NWD1Q149M9 1564 aa13.4□□□□□ -0.26
HDAC3-205ENST00000469550 ANKRD50Q9ULJ7 1429 aa13.39□□□□□ -0.27
HDAC3-205ENST00000469550 IDI1Q13907 227 aa13.38□□□□□ -0.27
HDAC3-205ENST00000469550 BCANQ96GW7 911 aa13.38□□□□□ -0.27
HDAC3-205ENST00000469550 CHIC2Q9UKJ5 165 aa13.38□□□□□ -0.27
HDAC3-205ENST00000469550 SLC52A1Q9NWF4 448 aa13.37□□□□□ -0.27
HDAC3-205ENST00000469550 NKTRP30414 1462 aaKnown RBP13.36□□□□□ -0.27
HDAC3-205ENST00000469550 ITGAEP38570 1179 aa13.36□□□□□ -0.27
HDAC3-205ENST00000469550 ANP32CO43423 234 aa13.36□□□□□ -0.27
HDAC3-205ENST00000469550 MYO5BQ9ULV0 1848 aa13.35□□□□□ -0.27
HDAC3-205ENST00000469550 ZFYVE9O95405 1425 aa13.35□□□□□ -0.27
HDAC3-205ENST00000469550 TMEM131LA2VDJ0 1609 aa13.35□□□□□ -0.27
HDAC3-205ENST00000469550 STAG3Q9UJ98 1225 aa13.34□□□□□ -0.27
HDAC3-205ENST00000469550 ROCK1Q13464 1354 aa13.34□□□□□ -0.27
HDAC3-205ENST00000469550 IQGAP3Q86VI3 1631 aa13.34□□□□□ -0.27
HDAC3-205ENST00000469550 KCNA6P17658 529 aa13.34□□□□□ -0.27
HDAC3-205ENST00000469550 FAM135BQ49AJ0 1406 aa13.34□□□□□ -0.27
HDAC3-205ENST00000469550 E9PCH4 1651 aa13.33□□□□□ -0.28
HDAC3-205ENST00000469550 SIN3AQ96ST3 1273 aa13.32□□□□□ -0.28
HDAC3-205ENST00000469550 TMEM94Q12767 1356 aa13.32□□□□□ -0.28
HDAC3-205ENST00000469550 CHD2O14647 1828 aaKnown RBP13.32□□□□□ -0.28
HDAC3-205ENST00000469550 FAM50AQ14320 339 aaKnown RBP13.32□□□□□ -0.28
HDAC3-205ENST00000469550 PLEKHG1Q9ULL1 1385 aa13.31□□□□□ -0.28
HDAC3-205ENST00000469550 ROBO1Q9Y6N7 1651 aa13.3□□□□□ -0.28
HDAC3-205ENST00000469550 DIP2AQ14689 1571 aa13.3□□□□□ -0.28
HDAC3-205ENST00000469550 FANCIQ9NVI1 1328 aa13.29□□□□□ -0.28
HDAC3-205ENST00000469550 RIMS2Q9UQ26 1411 aa13.29□□□□□ -0.28
HDAC3-205ENST00000469550 ERICH6BQ5W0A0 696 aa13.27□□□□□ -0.28
HDAC3-205ENST00000469550 SLC26A8Q96RN1 970 aa13.27□□□□□ -0.28
HDAC3-205ENST00000469550 NCOA3Q9Y6Q9 1424 aa13.27□□□□□ -0.29
HDAC3-205ENST00000469550 HDGFP51858 240 aaKnown RBP13.26□□□□□ -0.29
HDAC3-205ENST00000469550 PHF23Q9BUL5 403 aaPredicted RBP13.26□□□□□ -0.29
HDAC3-205ENST00000469550 PROSER2Q86WR7 435 aaPredicted RBP13.25□□□□□ -0.29
HDAC3-205ENST00000469550 TRIM52Q96A61 297 aa13.25□□□□□ -0.29
HDAC3-205ENST00000469550 PIK3R4Q99570 1358 aa13.25□□□□□ -0.29
HDAC3-205ENST00000469550 ADAMTS13Q76LX8 1427 aa13.24□□□□□ -0.29
HDAC3-205ENST00000469550 MSH6P52701 1360 aa13.24□□□□□ -0.29
HDAC3-205ENST00000469550 ABCF1Q8NE71 845 aaKnown RBP eCLIP13.24□□□□□ -0.29
HDAC3-205ENST00000469550 TBX22Q9Y458 520 aa13.24□□□□□ -0.29
HDAC3-205ENST00000469550 SPHKAPQ2M3C7 1700 aa13.23□□□□□ -0.29
HDAC3-205ENST00000469550 PHLPP1O60346 1717 aa13.22□□□□□ -0.29
HDAC3-205ENST00000469550 MSH5O43196 834 aa13.22□□□□□ -0.29
HDAC3-205ENST00000469550 TRPM2O94759 1503 aa13.22□□□□□ -0.29
HDAC3-205ENST00000469550 TONSLQ96HA7 1378 aa13.22□□□□□ -0.29
HDAC3-205ENST00000469550 RGS17Q9UGC6 210 aaPredicted RBP13.2□□□□□ -0.3
HDAC3-205ENST00000469550 SETBP1Q9Y6X0 1596 aa13.2□□□□□ -0.3
HDAC3-205ENST00000469550 COL16A1Q07092 1604 aaPredicted RBP13.2□□□□□ -0.3
HDAC3-205ENST00000469550 NRXN3Q9Y4C0 1643 aa13.2□□□□□ -0.3
HDAC3-205ENST00000469550 NUP155O75694 1391 aa13.2□□□□□ -0.3
HDAC3-205ENST00000469550 XRN1Q8IZH2 1706 aaKnown RBP13.19□□□□□ -0.3
HDAC3-205ENST00000469550 SIPA1L2Q9P2F8 1722 aaPredicted RBP13.19□□□□□ -0.3
HDAC3-205ENST00000469550 SENP3Q9H4L4 574 aaPredicted RBP13.19□□□□□ -0.3
HDAC3-205ENST00000469550 AHDC1Q5TGY3 1603 aaPredicted RBP13.18□□□□□ -0.3
HDAC3-205ENST00000469550 HFM1A2PYH4 1435 aa13.18□□□□□ -0.3
HDAC3-205ENST00000469550 RBM33Q96EV2 1170 aaKnown RBP13.18□□□□□ -0.3
HDAC3-205ENST00000469550 SLAIN2Q9P270 581 aa13.18□□□□□ -0.3
HDAC3-205ENST00000469550 HIRIP3Q9BW71 556 aaPredicted RBP13.17□□□□□ -0.3
HDAC3-205ENST00000469550 JCADQ9P266 1359 aa13.16□□□□□ -0.3
HDAC3-205ENST00000469550 DCCP43146 1447 aa13.16□□□□□ -0.3
HDAC3-205ENST00000469550 PTPRUQ92729 1446 aa13.15□□□□□ -0.3
HDAC3-205ENST00000469550 CHGAP10645 457 aaKnown RBP13.15□□□□□ -0.3
HDAC3-205ENST00000469550 SHPRHQ149N8 1683 aa13.15□□□□□ -0.3
HDAC3-205ENST00000469550 CLTCL1P53675 1640 aa13.14□□□□□ -0.31
HDAC3-205ENST00000469550 NEXMIFQ5QGS0 1516 aa13.13□□□□□ -0.31
HDAC3-205ENST00000469550 HNRNPUQ00839 825 aaKnown RBP eCLIP13.13□□□□□ -0.31
HDAC3-205ENST00000469550 CADPS2Q86UW7 1296 aa13.13□□□□□ -0.31
HDAC3-205ENST00000469550 C19orf44Q9H6X5 657 aa13.13□□□□□ -0.31
HDAC3-205ENST00000469550 KIF1BO60333 1816 aa13.12□□□□□ -0.31
HDAC3-205ENST00000469550 PPP4R2Q9NY27 417 aa13.12□□□□□ -0.31
HDAC3-205ENST00000469550 NAIPQ13075 1403 aa13.11□□□□□ -0.31
HDAC3-205ENST00000469550 NUTM2DQ5VT03 806 aaPredicted RBP13.11□□□□□ -0.31
HDAC3-205ENST00000469550 POTEAQ6S8J7 498 aa13.11□□□□□ -0.31
HDAC3-205ENST00000469550 ERICH6Q7L0X2 663 aa13.11□□□□□ -0.31
HDAC3-205ENST00000469550 AMOTL2Q9Y2J4 779 aa13.11□□□□□ -0.31
HDAC3-205ENST00000469550 NHSL1Q5SYE7 1610 aa13.1□□□□□ -0.31
HDAC3-205ENST00000469550 SPATA31A6Q5VVP1 1343 aa13.1□□□□□ -0.31
HDAC3-205ENST00000469550 SETD1AO15047 1707 aaKnown RBP13.1□□□□□ -0.31
HDAC3-205ENST00000469550 LRP6O75581 1613 aa13.09□□□□□ -0.31
HDAC3-205ENST00000469550 ATF3P18847 181 aa13.09□□□□□ -0.31
HDAC3-205ENST00000469550 C14orf37Q86TY3 774 aa13.09□□□□□ -0.31
HDAC3-205ENST00000469550 ASXL1Q8IXJ9 1541 aa13.08□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 92 ms