RNA–Protein interactions for RNA: ENST00000468949.1

HDAC6-216, Transcript of histone deacetylase 6, humanhuman

TSL 4

Gene HDAC6, Length 572 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-216ENST00000468949 CFAP65Q6ZU64 1925 aaKnown RBP11.78□□□□□ -0.52
HDAC6-216ENST00000468949 ILDR1Q86SU0 546 aaPredicted RBP11.77□□□□□ -0.53
HDAC6-216ENST00000468949 MED14O60244 1454 aa11.76□□□□□ -0.53
HDAC6-216ENST00000468949 IQSEC2Q5JU85 1478 aa11.76□□□□□ -0.53
HDAC6-216ENST00000468949 ARHGAP23Q9P227 1491 aa11.76□□□□□ -0.53
HDAC6-216ENST00000468949 NEUROD1Q13562 356 aa11.76□□□□□ -0.53
HDAC6-216ENST00000468949 THEMISQ8N1K5 641 aaPredicted RBP11.76□□□□□ -0.53
HDAC6-216ENST00000468949 STAG3Q9UJ98 1225 aa11.76□□□□□ -0.53
HDAC6-216ENST00000468949 NCKAP5LQ9HCH0 1330 aa11.76□□□□□ -0.53
HDAC6-216ENST00000468949 ANKRD30BQ9BXX2 1392 aa11.76□□□□□ -0.53
HDAC6-216ENST00000468949 SCAF11Q99590 1463 aaKnown RBP11.76□□□□□ -0.53
HDAC6-216ENST00000468949 CHGAP10645 457 aaKnown RBP11.75□□□□□ -0.53
HDAC6-216ENST00000468949 NPHP4O75161 1426 aaPredicted RBP11.75□□□□□ -0.53
HDAC6-216ENST00000468949 DCAF8L1A6NGE4 600 aa11.74□□□□□ -0.53
HDAC6-216ENST00000468949 SLC52A1Q9NWF4 448 aa11.74□□□□□ -0.53
HDAC6-216ENST00000468949 TONSLQ96HA7 1378 aa11.74□□□□□ -0.53
HDAC6-216ENST00000468949 CERKQ8TCT0 537 aa11.73□□□□□ -0.53
HDAC6-216ENST00000468949 FBXO41Q8TF61 875 aa11.73□□□□□ -0.53
HDAC6-216ENST00000468949 CLTCL1P53675 1640 aa11.72□□□□□ -0.53
HDAC6-216ENST00000468949 CPS1P31327 1500 aa11.72□□□□□ -0.53
HDAC6-216ENST00000468949 SLC4A2P04920 1241 aa11.72□□□□□ -0.53
HDAC6-216ENST00000468949 ANKLE2Q86XL3 938 aa11.72□□□□□ -0.53
HDAC6-216ENST00000468949 TMEM131LA2VDJ0 1609 aa11.71□□□□□ -0.53
HDAC6-216ENST00000468949 ZNF326Q5BKZ1 582 aaKnown RBP11.71□□□□□ -0.53
HDAC6-216ENST00000468949 SIN3AQ96ST3 1273 aa11.71□□□□□ -0.53
HDAC6-216ENST00000468949 MYO5BQ9ULV0 1848 aa11.71□□□□□ -0.54
HDAC6-216ENST00000468949 TMEM2Q9UHN6 1383 aa11.7□□□□□ -0.54
HDAC6-216ENST00000468949 ZNF335Q9H4Z2 1342 aaPredicted RBP11.7□□□□□ -0.54
HDAC6-216ENST00000468949 ZEB1P37275 1124 aaPredicted RBP11.69□□□□□ -0.54
HDAC6-216ENST00000468949 KIF1BO60333 1816 aa11.69□□□□□ -0.54
HDAC6-216ENST00000468949 IDI1Q13907 227 aa11.68□□□□□ -0.54
HDAC6-216ENST00000468949 RGL3Q3MIN7 710 aa11.68□□□□□ -0.54
HDAC6-216ENST00000468949 ZFYVE9O95405 1425 aa11.67□□□□□ -0.54
HDAC6-216ENST00000468949 EID1Q9Y6B2 187 aa11.66□□□□□ -0.54
HDAC6-216ENST00000468949 STRCP1A6NGW2 1772 aa11.65□□□□□ -0.54
HDAC6-216ENST00000468949 PPP1R15AO75807 674 aaPredicted RBP11.65□□□□□ -0.54
HDAC6-216ENST00000468949 TIMELESSQ9UNS1 1208 aa11.65□□□□□ -0.54
HDAC6-216ENST00000468949 DIP2AQ14689 1571 aa11.65□□□□□ -0.54
HDAC6-216ENST00000468949 NWD1Q149M9 1564 aa11.64□□□□□ -0.55
HDAC6-216ENST00000468949 SPATA31E1Q6ZUB1 1445 aa11.64□□□□□ -0.55
HDAC6-216ENST00000468949 HDGFP51858 240 aaKnown RBP11.64□□□□□ -0.55
HDAC6-216ENST00000468949 RPGRIP1LQ68CZ1 1315 aa11.63□□□□□ -0.55
HDAC6-216ENST00000468949 RIMS2Q9UQ26 1411 aa11.63□□□□□ -0.55
HDAC6-216ENST00000468949 TXNDC2Q86VQ3 553 aa11.63□□□□□ -0.55
HDAC6-216ENST00000468949 DCAF11Q8TEB1 546 aa11.63□□□□□ -0.55
HDAC6-216ENST00000468949 LTKP29376 864 aa11.62□□□□□ -0.55
HDAC6-216ENST00000468949 ABCF1Q8NE71 845 aaKnown RBP eCLIP11.62□□□□□ -0.55
HDAC6-216ENST00000468949 KDM2AQ9Y2K7 1162 aa11.62□□□□□ -0.55
HDAC6-216ENST00000468949 PLEKHG1Q9ULL1 1385 aa11.62□□□□□ -0.55
HDAC6-216ENST00000468949 NKTRP30414 1462 aaKnown RBP11.62□□□□□ -0.55
HDAC6-216ENST00000468949 L3MBTL2Q969R5 705 aa11.61□□□□□ -0.55
HDAC6-216ENST00000468949 LRRC7Q96NW7 1537 aa11.6□□□□□ -0.55
HDAC6-216ENST00000468949 VGFO15240 615 aaPredicted RBP11.6□□□□□ -0.55
HDAC6-216ENST00000468949 BCANQ96GW7 911 aa11.6□□□□□ -0.55
HDAC6-216ENST00000468949 STAC3Q96MF2 364 aa11.6□□□□□ -0.55
HDAC6-216ENST00000468949 MYOM2P54296 1465 aa11.59□□□□□ -0.55
HDAC6-216ENST00000468949 NEXMIFQ5QGS0 1516 aa11.59□□□□□ -0.55
HDAC6-216ENST00000468949 SETBP1Q9Y6X0 1596 aa11.58□□□□□ -0.55
HDAC6-216ENST00000468949 NUTM2DQ5VT03 806 aaPredicted RBP11.58□□□□□ -0.56
HDAC6-216ENST00000468949 XIRP1Q702N8 1843 aaKnown RBP11.58□□□□□ -0.56
HDAC6-216ENST00000468949 NRXN3Q9Y4C0 1643 aa11.57□□□□□ -0.56
HDAC6-216ENST00000468949 PPLO60437 1756 aa11.57□□□□□ -0.56
HDAC6-216ENST00000468949 IFT172Q9UG01 1749 aa11.56□□□□□ -0.56
HDAC6-216ENST00000468949 ALKQ9UM73 1620 aa11.56□□□□□ -0.56
HDAC6-216ENST00000468949 CHD2O14647 1828 aaKnown RBP11.56□□□□□ -0.56
HDAC6-216ENST00000468949 PRAG1Q86YV5 1406 aa11.55□□□□□ -0.56
HDAC6-216ENST00000468949 UBAP1LF5GYI3 381 aa11.55□□□□□ -0.56
HDAC6-216ENST00000468949 XRN1Q8IZH2 1706 aaKnown RBP11.55□□□□□ -0.56
HDAC6-216ENST00000468949 ADAMTS13Q76LX8 1427 aa11.54□□□□□ -0.56
HDAC6-216ENST00000468949 ADGRF5Q8IZF2 1346 aa11.54□□□□□ -0.56
HDAC6-216ENST00000468949 ROCK2O75116 1388 aaKnown RBP11.54□□□□□ -0.56
HDAC6-216ENST00000468949 PIK3R4Q99570 1358 aa11.54□□□□□ -0.56
HDAC6-216ENST00000468949 SLC26A8Q96RN1 970 aa11.53□□□□□ -0.56
HDAC6-216ENST00000468949 LAMC1P11047 1609 aa11.53□□□□□ -0.56
HDAC6-216ENST00000468949 PIK3C2GO75747 1445 aa11.52□□□□□ -0.56
HDAC6-216ENST00000468949 NRXN1Q9ULB1 1477 aa11.51□□□□□ -0.57
HDAC6-216ENST00000468949 TOM1O60784 492 aa11.51□□□□□ -0.57
HDAC6-216ENST00000468949 SETD1AO15047 1707 aaKnown RBP11.51□□□□□ -0.57
HDAC6-216ENST00000468949 TMEM94Q12767 1356 aa11.51□□□□□ -0.57
HDAC6-216ENST00000468949 RALGAPBQ86X10 1494 aa11.51□□□□□ -0.57
HDAC6-216ENST00000468949 MYCNP04198 464 aaPredicted RBP11.5□□□□□ -0.57
HDAC6-216ENST00000468949 KCNA6P17658 529 aa11.5□□□□□ -0.57
HDAC6-216ENST00000468949 TBX22Q9Y458 520 aa11.49□□□□□ -0.57
HDAC6-216ENST00000468949 NBPF8Q3BBV2 869 aa11.48□□□□□ -0.57
HDAC6-216ENST00000468949 CFAP70Q5T0N1 1121 aa11.48□□□□□ -0.57
HDAC6-216ENST00000468949 CARD11Q9BXL7 1154 aa11.48□□□□□ -0.57
HDAC6-216ENST00000468949 TRPM1Q7Z4N2 1603 aa11.48□□□□□ -0.57
HDAC6-216ENST00000468949 KIAA1210Q9ULL0 1709 aa11.47□□□□□ -0.57
HDAC6-216ENST00000468949 NCOA3Q9Y6Q9 1424 aa11.47□□□□□ -0.57
HDAC6-216ENST00000468949 MSH6P52701 1360 aa11.47□□□□□ -0.57
HDAC6-216ENST00000468949 EIF3AQ14152 1382 aaKnown RBP11.47□□□□□ -0.57
HDAC6-216ENST00000468949 C14orf93Q9H972 538 aaKnown RBP11.46□□□□□ -0.57
HDAC6-216ENST00000468949 ROBO1Q9Y6N7 1651 aa11.46□□□□□ -0.58
HDAC6-216ENST00000468949 PTPRUQ92729 1446 aa11.45□□□□□ -0.58
HDAC6-216ENST00000468949 PIP4K2BP78356 416 aa11.45□□□□□ -0.58
HDAC6-216ENST00000468949 PROSER2Q86WR7 435 aaPredicted RBP11.45□□□□□ -0.58
HDAC6-216ENST00000468949 NALCNQ8IZF0 1738 aa11.45□□□□□ -0.58
HDAC6-216ENST00000468949 DCCP43146 1447 aa11.44□□□□□ -0.58
HDAC6-216ENST00000468949 PTCH1Q13635 1447 aa11.44□□□□□ -0.58
HDAC6-216ENST00000468949 SIPA1L2Q9P2F8 1722 aaPredicted RBP11.44□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 84.8 ms